jgi.p|Nanoce1779_2|594666, mRNA_6345 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594666
Unique NamemRNA_6345
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length612
Alignment locationscaffold_15:391191..392127 +

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Properties
Property NameValue
TranscriptId594752
TrackFilteredModels2
ProteinId594666
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:391191..392127 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594666gene_6345Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594666mRNA_6345-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6345CDS_6345Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6345 ID=mRNA_6345|Name=jgi.p|Nanoce1779_2|594666|organism=Nannochloropsis oceanica|type=mRNA|length=612bp
CACCCATTTAACCTATTATTATCCCTCCCTCCCTCCTTCCCTTCACAATC
ACCAAATACAAACTTACCCATTCGCTTTCCCCCCGTGGCCTTGAACATAT
CTTCGTAGCTCAGCACGGTTCTCTCTCCTCCTCCCCACCCTCCTCTTCCT
CCTCCTGCCACAGCTGCAGCCGCCTTCAACTTTTCCTTCTTACTGTCCTT
CTTTCCTTTCTTCTTTTGCTTTTTTTCCCTCTTTTTCCTCCTCCCCTTGT
CTTTCTTCTTTCTCTTCTCTCCATCCTCCTCCTCCTCCCCCTCACTGCTG
CTACTGCTATCATTCTCCACAGCCTTGAGGCTTTTCAGCGCACTTTCAAA
AGAGTTAAACCACCAGCTTTCTTGTCCCTTGTTTCGATCATGTTCTTCGA
TTCCCAAGCCCGCGCTTTCTTCGCGTTGTTTTACCTTGACGTAGTTCTTG
ATGCCGTCCTCGTTCTTGCCCAAGCCCTTGCCTTCGGACCAGCCATGCTT
CATCAGCACCTTTTTTGCCCAATCACTCATCTTGCTGCCACTGACATGGT
TGATCCGGCTACCCAAGTCCGCCATCCCCCGCTTGCCGACAAGTTCCATT
GCTTCCAGCTGT
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protein sequence of jgi.p|Nanoce1779_2|594666

>mRNA_6345-protein ID=mRNA_6345-protein|Name=jgi.p|Nanoce1779_2|594666|organism=Nannochloropsis oceanica|type=polypeptide|length=74bp
MFFDSQARAFFALFYLDVVLDAVLVLAQALAFGPAMLHQHLFCPITHLAA
TDMVDPATQVRHPPLADKFHCFQL
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mRNA from alignment at scaffold_15:391191..392127+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6345 ID=mRNA_6345|Name=jgi.p|Nanoce1779_2|594666|organism=Nannochloropsis oceanica|type=mRNA|length=937bp|location=Sequence derived from alignment at scaffold_15:391191..392127+ (Nannochloropsis oceanica)
CACCCATTTAACCTATTATTATCCCTCCCTCCCACCCTCCCTCCCTCCCT
CCCTCCTTCCCTTCACAATCACCAAATACAAACTTACCCATTCGCTTTCC
CCCCGTGGCCTTGAACATATCTTCGTAGCTCAGCACGGTTCTCTCTCCTC
CTCCCCACCCTCCTCTTCCTCCTCCTGCCACAGCTGCAGCCGCCTTCAAC
TTTTCCTTCTTACTGTCCTTCTTTCCTTTCTTCTTTTGCTTTTTTTCCCT
CTTTTTCCTCCTCCCCTTGTCTTTCTTCTTTCTCTTCTCTCCATCCTCCT
CCTCCTCCCCCTCACTGCTGCTACTGCTATCATTCTCCACAGCCTTGAGG
CTTTTCAGCGCACTTTCAAAAGAGTTAAACCACCAGCTTTCTTGTCCCTT
GTTTCGATCATGTTCTTCGATTCCCAAGCCCGCGCTTTCTTCGCGTTGTT
TTACCTGAGGGCCGAGAAGGAGGGAGGGAGGAGGGAGGGAAATGGTTGGT
CAGCGCACAATTGGAAAGAGCTGAGGGTGAAAAGTGTGAATTGATAATGT
TCGACATTGCTGGAAGTGGTGCCATGCCTGTGATTAATCTCTTTAGGCAA
GCAGCATATGCGCATGAATCACAAGTCGCAGTCCTTGCCTTTCCACGTGA
TGAGGCGAACTGGTTTTTCAAAAATACCGGGCCAATTGAGGAGAAGCCAC
ACAGCCAAACACATCTCCCCGCAGTGTACACACAGACACACGCACAGCAT
CTTTCCTACCTTGACGTAGTTCTTGATGCCGTCCTCGTTCTTGCCCAAGC
CCTTGCCTTCGGACCAGCCATGCTTCATCAGCACCTTTTTTGCCCAATCA
CTCATCTTGCTGCCACTGACATGGTTGATCCGGCTACCCAAGTCCGCCAT
CCCCCGCTTGCCGACAAGTTCCATTGCTTCCAGCTGT
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Coding sequence (CDS) from alignment at scaffold_15:391191..392127+

>mRNA_6345 ID=mRNA_6345|Name=jgi.p|Nanoce1779_2|594666|organism=Nannochloropsis oceanica|type=CDS|length=446bp|location=Sequence derived from alignment at scaffold_15:391191..392127+ (Nannochloropsis oceanica)
ATGTTCTTCGATTCCCAAGCCCGCGCTTTCTTCGCGTTGTTTTACCTTGA
CGTAGTTCTTGATGCCGTCCTCGTTCTTGCCCAAGCCCTTGCCTTCGGAC
CAGCCATGCTTCATCAGCACCTTTTTTGCCCAATCACTCATCTTGCTGCC
ACTGACATGGTTGATCCGGCTACCCAAGTCCGCCATCCCCCGCTTGCCGA
CAAGTTCCATTGCTTCCAGCTGTATGTTCTTCGATTCCCAAGCCCGCGCT
TTCTTCGCGTTGTTTTACCTTGACGTAGTTCTTGATGCCGTCCTCGTTCT
TGCCCAAGCCCTTGCCTTCGGACCAGCCATGCTTCATCAGCACCTTTTTT
GCCCAATCACTCATCTTGCTGCCACTGACATGGTTGATCCGGCTACCCAA
GTCCGCCATCCCCCGCTTGCCGACAAGTTCCATTGCTTCCAGCTGT
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Synonyms
Publications