jgi.p|Nanoce1779_2|594664, mRNA_6344 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594664
Unique NamemRNA_6344
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length661
Alignment locationscaffold_15:390458..391118 -

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Properties
Property NameValue
TranscriptId594750
TrackFilteredModels2
ProteinId594664
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:390458..391118 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594664gene_6344Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594664mRNA_6344-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6344CDS_6344Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6344 ID=mRNA_6344|Name=jgi.p|Nanoce1779_2|594664|organism=Nannochloropsis oceanica|type=mRNA|length=661bp
CCCCTCCTCCCGCCCTCCCTCCCTCCCTATATCTCTTCACCCTTTGAGCT
CTATAAATAAGCTGTTTTTCATTTTTTTTCCTTATAAGAAGCCTGCCTCC
CTCCCACTTTCCCTTTTCTTTCCCCCTCTTTTCCTCCCTCTTCCACCCAC
AGGTATGCGGGCCCGTGCCACTCAAAAGGCTAAGTGGGAACGGACAGAGA
CGGCAACGCTGATCAGCACCCACGACCCTCTTTATGTATTGCCAGCAGCA
GAAGCAGCATCGTCAACAGCAACAGTGACAGCGCTCAGAGTAGTGGAGAA
GAAGGAGGTGGTGGTGGTGGAGGAGCGGGAAGGGAAGGATGAAAAGAGGA
AGGAGAGGAAGAGGAAGCGGAAGGAGTGGGGTGCGGCGGTGGATGCGGTG
GAGGATGAGGCAAAGGAAAAGGAGGAGAAAGTTGTGGTGATGGCGAGGAA
GAAAAAAGACAAGAAGAAAAAGGCTGTTCGCAAGGAGGACGATGAGGAGG
TAGTGCCACAGGACAAGGGGACGAGTAAGAGGAGTAGGATGGAGGAGAGG
GGCTAGGGGGAGAATTTTGATGGAAGTAAAAGTGTATGTAAAAAGGCTTG
TGCTTAGCCATTTAAAGTATGAAATAAAGATTTAAATGAAGGAAAAAAGA
TAAGCAAGCAC
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protein sequence of jgi.p|Nanoce1779_2|594664

>mRNA_6344-protein ID=mRNA_6344-protein|Name=jgi.p|Nanoce1779_2|594664|organism=Nannochloropsis oceanica|type=polypeptide|length=169bp
SINKLFFIFFPYKKPASLPLSLFFPPLFLPLPPTGMRARATQKAKWERTE
TATLISTHDPLYVLPAAEAASSTATVTALRVVEKKEVVVVEEREGKDEKR
KERKRKRKEWGAAVDAVEDEAKEKEEKVVVMARKKKDKKKKAVRKEDDEE
VVPQDKGTSKRSRMEERG*
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mRNA from alignment at scaffold_15:390458..391118-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6344 ID=mRNA_6344|Name=jgi.p|Nanoce1779_2|594664|organism=Nannochloropsis oceanica|type=mRNA|length=661bp|location=Sequence derived from alignment at scaffold_15:390458..391118- (Nannochloropsis oceanica)
CCCCTCCTCCCGCCCTCCCTCCCTCCCTATATCTCTTCACCCTTTGAGCT
CTATAAATAAGCTGTTTTTCATTTTTTTTCCTTATAAGAAGCCTGCCTCC
CTCCCACTTTCCCTTTTCTTTCCCCCTCTTTTCCTCCCTCTTCCACCCAC
AGGTATGCGGGCCCGTGCCACTCAAAAGGCTAAGTGGGAACGGACAGAGA
CGGCAACGCTGATCAGCACCCACGACCCTCTTTATGTATTGCCAGCAGCA
GAAGCAGCATCGTCAACAGCAACAGTGACAGCGCTCAGAGTAGTGGAGAA
GAAGGAGGTGGTGGTGGTGGAGGAGCGGGAAGGGAAGGATGAAAAGAGGA
AGGAGAGGAAGAGGAAGCGGAAGGAGTGGGGTGCGGCGGTGGATGCGGTG
GAGGATGAGGCAAAGGAAAAGGAGGAGAAAGTTGTGGTGATGGCGAGGAA
GAAAAAAGACAAGAAGAAAAAGGCTGTTCGCAAGGAGGACGATGAGGAGG
TAGTGCCACAGGACAAGGGGACGAGTAAGAGGAGTAGGATGGAGGAGAGG
GGCTAGGGGGAGAATTTTGATGGAAGTAAAAGTGTATGTAAAAAGGCTTG
TGCTTAGCCATTTAAAGTATGAAATAAAGATTTAAATGAAGGAAAAAAGA
TAAGCAAGCAC
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Coding sequence (CDS) from alignment at scaffold_15:390458..391118-

>mRNA_6344 ID=mRNA_6344|Name=jgi.p|Nanoce1779_2|594664|organism=Nannochloropsis oceanica|type=CDS|length=507bp|location=Sequence derived from alignment at scaffold_15:390458..391118- (Nannochloropsis oceanica)
TCTATAAATAAGCTGTTTTTCATTTTTTTTCCTTATAAGAAGCCTGCCTC
CCTCCCACTTTCCCTTTTCTTTCCCCCTCTTTTCCTCCCTCTTCCACCCA
CAGGTATGCGGGCCCGTGCCACTCAAAAGGCTAAGTGGGAACGGACAGAG
ACGGCAACGCTGATCAGCACCCACGACCCTCTTTATGTATTGCCAGCAGC
AGAAGCAGCATCGTCAACAGCAACAGTGACAGCGCTCAGAGTAGTGGAGA
AGAAGGAGGTGGTGGTGGTGGAGGAGCGGGAAGGGAAGGATGAAAAGAGG
AAGGAGAGGAAGAGGAAGCGGAAGGAGTGGGGTGCGGCGGTGGATGCGGT
GGAGGATGAGGCAAAGGAAAAGGAGGAGAAAGTTGTGGTGATGGCGAGGA
AGAAAAAAGACAAGAAGAAAAAGGCTGTTCGCAAGGAGGACGATGAGGAG
GTAGTGCCACAGGACAAGGGGACGAGTAAGAGGAGTAGGATGGAGGAGAG
GGGCTAG
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Synonyms
Publications