jgi.p|Nanoce1779_2|594663, mRNA_6343 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594663
Unique NamemRNA_6343
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length361
Alignment locationscaffold_15:390077..390437 +

Link to JBrowse

Properties
Property NameValue
TranscriptId594749
TrackFilteredModels2
ProteinId594663
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:390077..390437 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594663gene_6343Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594663mRNA_6343-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6343CDS_6343Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6343 ID=mRNA_6343|Name=jgi.p|Nanoce1779_2|594663|organism=Nannochloropsis oceanica|type=mRNA|length=361bp
TCCGGCAATGAGGACGGCGAGGAGGAGCGTGAGGAAGAAGAGCATCACCA
AGTCACCTTCATTGGCGCTATTGCCGCTGCTCGGCATGGTGCTTTGCTTG
TGTGGACGGCGCGCTGTATGTGTCGTGTGGTGGAGTGAGGAGGGTCATAA
TACTGCTAGCTCCTCGCGCTCGCTCGAAATAGTGGGCGAGGGGGGTGACA
GCCCACAGCCGGCACATTTCTAGTGGGCCAGGTATCAAGAGGAAATGGCA
AAGGACGGGTAGGAGGCGGGAGGATGTGTAGTGTAATGACCAGAATAAGT
CCAAACGAAGACAAAGCAAAGGCCACAAAACCTTCTCGCCCTCTTCGAGC
TCTCCTCTCCA
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protein sequence of jgi.p|Nanoce1779_2|594663

>mRNA_6343-protein ID=mRNA_6343-protein|Name=jgi.p|Nanoce1779_2|594663|organism=Nannochloropsis oceanica|type=polypeptide|length=72bp
MRTARRSVRKKSITKSPSLALLPLLGMVLCLCGRRAVCVVWWSEEGHNTA
SSSRSLEIVGEGGDSPQPAHF*
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mRNA from alignment at scaffold_15:390077..390437+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6343 ID=mRNA_6343|Name=jgi.p|Nanoce1779_2|594663|organism=Nannochloropsis oceanica|type=mRNA|length=361bp|location=Sequence derived from alignment at scaffold_15:390077..390437+ (Nannochloropsis oceanica)
TCCGGCAATGAGGACGGCGAGGAGGAGCGTGAGGAAGAAGAGCATCACCA
AGTCACCTTCATTGGCGCTATTGCCGCTGCTCGGCATGGTGCTTTGCTTG
TGTGGACGGCGCGCTGTATGTGTCGTGTGGTGGAGTGAGGAGGGTCATAA
TACTGCTAGCTCCTCGCGCTCGCTCGAAATAGTGGGCGAGGGGGGTGACA
GCCCACAGCCGGCACATTTCTAGTGGGCCAGGTATCAAGAGGAAATGGCA
AAGGACGGGTAGGAGGCGGGAGGATGTGTAGTGTAATGACCAGAATAAGT
CCAAACGAAGACAAAGCAAAGGCCACAAAACCTTCTCGCCCTCTTCGAGC
TCTCCTCTCCA
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Coding sequence (CDS) from alignment at scaffold_15:390077..390437+

>mRNA_6343 ID=mRNA_6343|Name=jgi.p|Nanoce1779_2|594663|organism=Nannochloropsis oceanica|type=CDS|length=216bp|location=Sequence derived from alignment at scaffold_15:390077..390437+ (Nannochloropsis oceanica)
ATGAGGACGGCGAGGAGGAGCGTGAGGAAGAAGAGCATCACCAAGTCACC
TTCATTGGCGCTATTGCCGCTGCTCGGCATGGTGCTTTGCTTGTGTGGAC
GGCGCGCTGTATGTGTCGTGTGGTGGAGTGAGGAGGGTCATAATACTGCT
AGCTCCTCGCGCTCGCTCGAAATAGTGGGCGAGGGGGGTGACAGCCCACA
GCCGGCACATTTCTAG
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Synonyms
Publications