jgi.p|Nanoce1779_2|594661, mRNA_6341 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594661
Unique NamemRNA_6341
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1486
Alignment locationscaffold_15:387943..389689 +

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Properties
Property NameValue
TranscriptId594747
TrackFilteredModels2
ProteinId594661
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:387943..389689 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594661gene_6341Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594661mRNA_6341-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6341CDS_6341Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6341 ID=mRNA_6341|Name=jgi.p|Nanoce1779_2|594661|organism=Nannochloropsis oceanica|type=mRNA|length=1486bp
ATGCCACCAACGGCAGCCCATCGCCCTCAACGCTCGGAGGCTCAATGCGG
CACCGACATGAGCAGCAGCAACAACAGCAGCGGCGGCGGCGGTAGTCAGC
AACAAAAAGGCAATAATATAACCGAGGTGGAGCAAGAACACTGCCAGGAC
GACGAGGCGGAAGACGGGGACGGCGAGGGGGAGGGCGAAGAGGAGGGCAT
GGACGACGAAACCAAGCGGCAGAAACGCCTGGAGTTGAATCGAAAAGCAG
CACACGAAAGCCGGAAACGGAAGAAAGCAAAATATCAGCAACTTGTCGAA
ACACTTCAAACCCTGCGTACCGACACTCTGCAGCTCTCCGCGCAGAATGA
CTTGATGCGACAGCAGCTAGCCACGCCCCAAGCAACCAAGTACACGCCCG
AAAAAGAAGAGCTGGAAAAAGAGAACAAACAATTAAGGAATGCGCTTTTG
ATGGCCTTGCAGGCGTTGGGAGAGGACGAGGAGGATGGAGAGGGGGAACG
ACAGCCACCAGCTCTACAGAAGGTGAAGGAGACATGAATTCTTGCATGCT
GAAGAAAAAGGAGAAGATGGGGTAGATAAGGCGGTATGGAGGTTTGAATG
GTGTGTGCCTGTCCTTTCTAGGTATGTCTGCCTGCAAGGAGGGGGAGGAT
AATGATGAATATTCAAAATGTGTGTATGTAGGCACAGTTTTTTGAGGGGA
GTGCGAGACGAAGGACACAACACAAAGACTGCAGCAGAGAAACGAAACGA
AACAAACAGAGGCTCGTACAGTAGTGCAGTCATTTTTCATAGGGGAAAAT
AACAACGACTAAACACGAATAATGATGTAAAGTGAACCAAGATAAAGTTT
CTCCCCTTCCCCTCACAAATCGGCTGCGACGTTTCGGATGTGAAAGTATC
GTTGCGTGAGCCTTTTAACTTTAGTCCACTTCCCCCCCCCCCTCCGGCCT
ATCTTTCTTTCTTGCCCTGATCACCGCTGTCGTTGCTGTTGCTGTTGCTG
TAGCTGCAGCTGAGACCTGGTTGTCGGCATCGTGGGTGGCGGCAACAGCG
CGAGCAACGCCCCCAGGGAAGAAATAACTCTCAATTTGCTTTTCTGTGAA
GCGATGGTAGACGGAGAAGAAGCAGAGGAGGAAGAAGAAAAAGAAGGAGA
AGAGGAGGAGGAAAAAGAAGGAGAAGAGGAGGAGGAAGAGGATGAGGAAG
AGGAGGAGGATGAGGAGGAGGACGAGGAGGAGGACGAGAAGGAGGTGTCC
ACCAGGAGAAGTCGCGGAAGGAAGGGGAGGAGGTTCGAAAGTACGAGCTG
GTCGTGATCGATATGGAGATGGGGCTTGAGCTGCCGAGCTATCGCTTGTT
TTCCCACAAAAGTGGAATGGAAGAGGATTTTATGTGCCATAACAGCCTCC
TGCTGCTGCTGTTGCTGCTGCTGCTGCTGCTGCGCATCCATCCCCCTTAC
CATCCCCTCCCTCCGTAGCAAGGCCATGACCCGTGC
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protein sequence of jgi.p|Nanoce1779_2|594661

>mRNA_6341-protein ID=mRNA_6341-protein|Name=jgi.p|Nanoce1779_2|594661|organism=Nannochloropsis oceanica|type=polypeptide|length=179bp
MPPTAAHRPQRSEAQCGTDMSSSNNSSGGGGSQQQKGNNITEVEQEHCQD
DEAEDGDGEGEGEEEGMDDETKRQKRLELNRKAAHESRKRKKAKYQQLVE
TLQTLRTDTLQLSAQNDLMRQQLATPQATKYTPEKEELEKENKQLRNALL
MALQALGEDEEDGEGERQPPALQKVKET*
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mRNA from alignment at scaffold_15:387943..389689+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6341 ID=mRNA_6341|Name=jgi.p|Nanoce1779_2|594661|organism=Nannochloropsis oceanica|type=mRNA|length=1747bp|location=Sequence derived from alignment at scaffold_15:387943..389689+ (Nannochloropsis oceanica)
ATGCCACCAACGGCAGCCCATCGCCCTCAACGCTCGGAGGCTCAATGCGG
CACCGACATGAGCAGCAGCAACAACAGCAGCGGCGGCGGCGGTAGTCAGC
AACAAAAAGGCAATAATATAACCGAGGTGGAGCAAGAACACTGCCAGGAC
GACGAGGCGGAAGACGGGGACGGCGAGGGGGAGGGCGAAGAGGAGGGCAT
GGACGACGAAACCAAGCGGCAGAAACGCCTGGAGTTGAATCGAAAAGCAG
CACACGAAAGCCGGAAACGGAAGAAAGCAAAATATCAGCAACTTGTCGAG
TAAGTGATGGACGGAGCAGCCTTATTTGTAAAGTAGCGAAACGTGTGTTT
CTGTACCTTGCATAACACAATGAACACGTTTCACCCTTCCTCCTTCCATT
CCTCCCTCTCTCTCGCCCTCCCTCCCTTTATCTTTTATCACAGAACACTT
CAAACCCTGCGTACCGACACTCTGCAGCTCTCCGCGCAGAATGACTTGAT
GCGACAGCAGCTAGCCACGCCCCAAGCAACCAAGTACACGCCCGAAAAAG
AAGAGCTGGAAAAAGAGAACAAACAATTAAGGAATGCGCTTTTGATGGCC
TTGCAGGCGTTGGGAGAGGACGAGGAGGATGGAGAGGGGGAACGACAGCC
ACCAGCTCTACAGAAGGTGAAGGAGACATGAATTCTTGCATGCTGAAGAA
AAAGGAGAAGATGGGGTAGATAAGGCGGTATGGAGGTTTGAATGGTGTGT
GCCTGTCCTTTCTAGGTATGTCTGCCTGCAAGGAGGGGGAGGATAATGAT
GAATATTCAAAATGTGTGTATGTAGGCACAGTTTTTTGAGGGGAGTGCGA
GACGAAGGACACAACACAAAGACTGCAGCAGAGAAACGAAACGAAACAAA
CAGAGGCTCGTACAGTAGTGCAGTCATTTTTCATAGGGGAAAATAACAAC
GACTAAACACGAATAATGATGTAAAGTGAACCAAGATAAAGTTTCTCCCC
TTCCCCTCACAAATCGGCTGCGACGTTTCGGATGTGAAAGTATCGTTGCG
TGAGCCTTTTAACTTTAGTCCACTTCCCCCCCCCCCTCCGGCCTATCTTT
CTTTCTTGCCCTGATCACCGCTGTCGTTGCTGTTGCTGTTGCTGTAGCTG
CAGCTGAGACCTGGTTGTCGGCATCGTGGGTGGCGGCAACAGCGCGAGCA
ACGCCCCCAGGGAAGAAATAACTCTCAATTTGCTTTTCTGTGAAGCGATG
GTAGACGGAGAAGAAGCAGAGGAGGAAGAAGAAAAAGAAGGAGAAGAGGA
GGAGGAAAAAGAAGGAGAAGAGGAGGAGGAAGAGGATGAGGAAGAGGAGG
AGGATGAGGAGGAGGACGAGGAGGAGGACGAGAAGGAGGTGTCCACCAGG
AGAAGTCGCGGAAGGAAGGGGAGGAGGTTCGAAAGTACGAGCTGGTCGTG
ATCGATATGGAGATGGGGCTTGAGCTGCCGAGCTATCGCTTGTTTTCCCA
CAAAAGTGGAATGGAAGAGGATTTTCTGGTTGGGAGGAGAAAGGGAGGGA
GGGGGGGGAAGGTGAGGGCAGGCTCTTTAAGATCGATCGATGCCTGCAAG
ATGGTTACACATCCACCCTTTATTCACTTCTTGAATGCGTACATGTGCCA
TAACAGCCTCCTGCTGCTGCTGTTGCTGCTGCTGCTGCTGCTGCGCATCC
ATCCCCCTTACCATCCCCTCCCTCCGTAGCAAGGCCATGACCCGTGC
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Coding sequence (CDS) from alignment at scaffold_15:387943..389689+

>mRNA_6341 ID=mRNA_6341|Name=jgi.p|Nanoce1779_2|594661|organism=Nannochloropsis oceanica|type=CDS|length=1074bp|location=Sequence derived from alignment at scaffold_15:387943..389689+ (Nannochloropsis oceanica)
ATGCCACCAACGGCAGCCCATCGCCCTCAACGCTCGGAGGCTCAATGCGG
CACCGACATGAGCAGCAGCAACAACAGCAGCGGCGGCGGCGGTAGTCAGC
AACAAAAAGGCAATAATATAACCGAGGTGGAGCAAGAACACTGCCAGGAC
GACGAGGCGGAAGACGGGGACGGCGAGGGGGAGGGCGAAGAGGAGGGCAT
GGACGACGAAACCAAGCGGCAGAAACGCCTGGAGTTGAATCGAAAAGCAG
CACACGAAAGCCGGAAACGGAAGAAAGCAAAATATCAGCAACTTGTCGAA
ACACTTCAAACCCTGCGTACCGACACTCTGCAGCTCTCCGCGCAGAATGA
CTTGATGCGACAGCAGCTAGCCACGCCCCAAGCAACCAAGTACACGCCCG
AAAAAGAAGAGCTGGAAAAAGAGAACAAACAATTAAGGAATGCGCTTTTG
ATGGCCTTGCAGGCGTTGGGAGAGGACGAGGAGGATGGAGAGGGGGAACG
ACAGCCACCAGCTCTACAGAAGGTGAAGGAGACATGAATGCCACCAACGG
CAGCCCATCGCCCTCAACGCTCGGAGGCTCAATGCGGCACCGACATGAGC
AGCAGCAACAACAGCAGCGGCGGCGGCGGTAGTCAGCAACAAAAAGGCAA
TAATATAACCGAGGTGGAGCAAGAACACTGCCAGGACGACGAGGCGGAAG
ACGGGGACGGCGAGGGGGAGGGCGAAGAGGAGGGCATGGACGACGAAACC
AAGCGGCAGAAACGCCTGGAGTTGAATCGAAAAGCAGCACACGAAAGCCG
GAAACGGAAGAAAGCAAAATATCAGCAACTTGTCGAAACACTTCAAACCC
TGCGTACCGACACTCTGCAGCTCTCCGCGCAGAATGACTTGATGCGACAG
CAGCTAGCCACGCCCCAAGCAACCAAGTACACGCCCGAAAAAGAAGAGCT
GGAAAAAGAGAACAAACAATTAAGGAATGCGCTTTTGATGGCCTTGCAGG
CGTTGGGAGAGGACGAGGAGGATGGAGAGGGGGAACGACAGCCACCAGCT
CTACAGAAGGTGAAGGAGACATGA
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Synonyms
Publications