jgi.p|Nanoce1779_2|594659, mRNA_6340 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594659
Unique NamemRNA_6340
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1458
Alignment locationscaffold_15:386037..387494 -

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Properties
Property NameValue
TranscriptId594745
TrackFilteredModels2
ProteinId594659
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:386037..387494 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594659gene_6340Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594659mRNA_6340-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6340CDS_6340Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6340 ID=mRNA_6340|Name=jgi.p|Nanoce1779_2|594659|organism=Nannochloropsis oceanica|type=mRNA|length=1458bp
AGCACAGGCAAAATTATGAGGATCTGGATGACGTCGAGCATGTTGCATCT
GCTTAACCCTTTCTCGCTTTTCCTGGCCTTGCTTCTGGTTCTGCCGAAGA
CAGCGAATGCTACTCCGCAAACAACAGGCCCCGTTATTGGCGTGGTCGCT
CAGCCCAAAAAGTCTTTCATCCATCCCTGTGACGGTGACTGTGAGTATAT
CGCAGCCAGTTACGTCAAATGGGTCGAGAGTGCGGGCGGTCGCGTCTTGC
CGATTCCGTACGATGCCTCTCCAAAAGACCTGGACACGATTTTTGCGTCC
GTCAACGGCCTGCTCTTCCCAGGCGGGAGTAGCTTGATCTCCAAGGGTGC
AAGGCACTTATTTCTCAGAGCACGACAAGCGAATGAGGCGGGGGATTTCT
TCCCTGTCTGGGGGACGTGCTTAGGGCTGGAGTGGATGGTCGAAGCCGTA
TGTGCCGAAGCCGAAGAGGCTGATCCGTCCCTTCCCCACTTTACGATGGA
CAACGACTACGACGCATGGAACCTGACGTTGCCCTTACTTTTTACTGAAA
GTGCGAGCACCAGTCGATTATTTCAAGGCCTGAACCCTAGCTCGCGTACT
GCGGCTCGGACACAAAATATAACGCTCAACAACCACCACAAGGGTGTATC
GCCCTCCCATTTAGCAGTTACCCCAGCGTTAGCATCTTTCTTTGATGTGC
TTTCCACAAATTTAGACAGAAAGGGTTTGCCATTTGTCTCAACGGTGGAA
GGAAAGAATGGAATGCCTTTTTATGGCGTCCAGTTTCACCCGGAAAAGGC
CTTGTTTGAATGGGGGGTCGAGGAGGTGGGAGATGGAGGAACGGCGAAAG
AAGACGTGGTATGGTGGCCGTACGAGGCTATCAATCACTCCCCTTCCGCG
CAGGCGTTGACTCTCTATTTGGCCAATTTTTTTCTGGGGGAGGCAAGGAA
GAATGGGCACGTGTTTCCCGAGGAGAGGGGGGGGGAGGTGTTAAGTTGGG
CTTACCCTGTCGTGTATTCGGGACCAGAATTTGTTCAATCGTATTTTTTC
CACGAATATTATTTTCCTGGGAAAGGTGATTATCCGAACGAGGATATGGG
CAGTGGTGCTGTCGTACATGATGATGATGATGATAATGATGATGATGACG
ATAAAGCTGCAGCTCCTGCTGCTACTGTTGCTGTCGCAGCTGAGGGAGAG
GAAGGTCGTGGTGGCAATGGAGGTGCGACTGCTATCGCTGAGGGAGAGGA
GGACGAACAATCATTCGAGCGTGCCTCGCATGCATTGCGAGGAGGGAGAG
CCAAGAGCAACGGCGGCATCCTGCTGGAAATGGCATGAAAAAATGTCACG
AGAAAGAGACGAATTATTACCTGATTGGTTGAACACATGTAAAAACATTC
ACAAGTTAGAGGAGGCGAAAAATGCAAAAAAAGAAGAAGGAGAAAAACAA
CTGTTGTA
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protein sequence of jgi.p|Nanoce1779_2|594659

>mRNA_6340-protein ID=mRNA_6340-protein|Name=jgi.p|Nanoce1779_2|594659|organism=Nannochloropsis oceanica|type=polypeptide|length=441bp
MRIWMTSSMLHLLNPFSLFLALLLVLPKTANATPQTTGPVIGVVAQPKKS
FIHPCDGDCEYIAASYVKWVESAGGRVLPIPYDASPKDLDTIFASVNGLL
FPGGSSLISKGARHLFLRARQANEAGDFFPVWGTCLGLEWMVEAVCAEAE
EADPSLPHFTMDNDYDAWNLTLPLLFTESASTSRLFQGLNPSSRTAARTQ
NITLNNHHKGVSPSHLAVTPALASFFDVLSTNLDRKGLPFVSTVEGKNGM
PFYGVQFHPEKALFEWGVEEVGDGGTAKEDVVWWPYEAINHSPSAQALTL
YLANFFLGEARKNGHVFPEERGGEVLSWAYPVVYSGPEFVQSYFFHEYYF
PGKGDYPNEDMGSGAVVHDDDDDNDDDDDKAAAPAATVAVAAEGEEGRGG
NGGATAIAEGEEDEQSFERASHALRGGRAKSNGGILLEMA*
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mRNA from alignment at scaffold_15:386037..387494-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6340 ID=mRNA_6340|Name=jgi.p|Nanoce1779_2|594659|organism=Nannochloropsis oceanica|type=mRNA|length=1458bp|location=Sequence derived from alignment at scaffold_15:386037..387494- (Nannochloropsis oceanica)
AGCACAGGCAAAATTATGAGGATCTGGATGACGTCGAGCATGTTGCATCT
GCTTAACCCTTTCTCGCTTTTCCTGGCCTTGCTTCTGGTTCTGCCGAAGA
CAGCGAATGCTACTCCGCAAACAACAGGCCCCGTTATTGGCGTGGTCGCT
CAGCCCAAAAAGTCTTTCATCCATCCCTGTGACGGTGACTGTGAGTATAT
CGCAGCCAGTTACGTCAAATGGGTCGAGAGTGCGGGCGGTCGCGTCTTGC
CGATTCCGTACGATGCCTCTCCAAAAGACCTGGACACGATTTTTGCGTCC
GTCAACGGCCTGCTCTTCCCAGGCGGGAGTAGCTTGATCTCCAAGGGTGC
AAGGCACTTATTTCTCAGAGCACGACAAGCGAATGAGGCGGGGGATTTCT
TCCCTGTCTGGGGGACGTGCTTAGGGCTGGAGTGGATGGTCGAAGCCGTA
TGTGCCGAAGCCGAAGAGGCTGATCCGTCCCTTCCCCACTTTACGATGGA
CAACGACTACGACGCATGGAACCTGACGTTGCCCTTACTTTTTACTGAAA
GTGCGAGCACCAGTCGATTATTTCAAGGCCTGAACCCTAGCTCGCGTACT
GCGGCTCGGACACAAAATATAACGCTCAACAACCACCACAAGGGTGTATC
GCCCTCCCATTTAGCAGTTACCCCAGCGTTAGCATCTTTCTTTGATGTGC
TTTCCACAAATTTAGACAGAAAGGGTTTGCCATTTGTCTCAACGGTGGAA
GGAAAGAATGGAATGCCTTTTTATGGCGTCCAGTTTCACCCGGAAAAGGC
CTTGTTTGAATGGGGGGTCGAGGAGGTGGGAGATGGAGGAACGGCGAAAG
AAGACGTGGTATGGTGGCCGTACGAGGCTATCAATCACTCCCCTTCCGCG
CAGGCGTTGACTCTCTATTTGGCCAATTTTTTTCTGGGGGAGGCAAGGAA
GAATGGGCACGTGTTTCCCGAGGAGAGGGGGGGGGAGGTGTTAAGTTGGG
CTTACCCTGTCGTGTATTCGGGACCAGAATTTGTTCAATCGTATTTTTTC
CACGAATATTATTTTCCTGGGAAAGGTGATTATCCGAACGAGGATATGGG
CAGTGGTGCTGTCGTACATGATGATGATGATGATAATGATGATGATGACG
ATAAAGCTGCAGCTCCTGCTGCTACTGTTGCTGTCGCAGCTGAGGGAGAG
GAAGGTCGTGGTGGCAATGGAGGTGCGACTGCTATCGCTGAGGGAGAGGA
GGACGAACAATCATTCGAGCGTGCCTCGCATGCATTGCGAGGAGGGAGAG
CCAAGAGCAACGGCGGCATCCTGCTGGAAATGGCATGAAAAAATGTCACG
AGAAAGAGACGAATTATTACCTGATTGGTTGAACACATGTAAAAACATTC
ACAAGTTAGAGGAGGCGAAAAATGCAAAAAAAGAAGAAGGAGAAAAACAA
CTGTTGTA
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Coding sequence (CDS) from alignment at scaffold_15:386037..387494-

>mRNA_6340 ID=mRNA_6340|Name=jgi.p|Nanoce1779_2|594659|organism=Nannochloropsis oceanica|type=CDS|length=1323bp|location=Sequence derived from alignment at scaffold_15:386037..387494- (Nannochloropsis oceanica)
ATGAGGATCTGGATGACGTCGAGCATGTTGCATCTGCTTAACCCTTTCTC
GCTTTTCCTGGCCTTGCTTCTGGTTCTGCCGAAGACAGCGAATGCTACTC
CGCAAACAACAGGCCCCGTTATTGGCGTGGTCGCTCAGCCCAAAAAGTCT
TTCATCCATCCCTGTGACGGTGACTGTGAGTATATCGCAGCCAGTTACGT
CAAATGGGTCGAGAGTGCGGGCGGTCGCGTCTTGCCGATTCCGTACGATG
CCTCTCCAAAAGACCTGGACACGATTTTTGCGTCCGTCAACGGCCTGCTC
TTCCCAGGCGGGAGTAGCTTGATCTCCAAGGGTGCAAGGCACTTATTTCT
CAGAGCACGACAAGCGAATGAGGCGGGGGATTTCTTCCCTGTCTGGGGGA
CGTGCTTAGGGCTGGAGTGGATGGTCGAAGCCGTATGTGCCGAAGCCGAA
GAGGCTGATCCGTCCCTTCCCCACTTTACGATGGACAACGACTACGACGC
ATGGAACCTGACGTTGCCCTTACTTTTTACTGAAAGTGCGAGCACCAGTC
GATTATTTCAAGGCCTGAACCCTAGCTCGCGTACTGCGGCTCGGACACAA
AATATAACGCTCAACAACCACCACAAGGGTGTATCGCCCTCCCATTTAGC
AGTTACCCCAGCGTTAGCATCTTTCTTTGATGTGCTTTCCACAAATTTAG
ACAGAAAGGGTTTGCCATTTGTCTCAACGGTGGAAGGAAAGAATGGAATG
CCTTTTTATGGCGTCCAGTTTCACCCGGAAAAGGCCTTGTTTGAATGGGG
GGTCGAGGAGGTGGGAGATGGAGGAACGGCGAAAGAAGACGTGGTATGGT
GGCCGTACGAGGCTATCAATCACTCCCCTTCCGCGCAGGCGTTGACTCTC
TATTTGGCCAATTTTTTTCTGGGGGAGGCAAGGAAGAATGGGCACGTGTT
TCCCGAGGAGAGGGGGGGGGAGGTGTTAAGTTGGGCTTACCCTGTCGTGT
ATTCGGGACCAGAATTTGTTCAATCGTATTTTTTCCACGAATATTATTTT
CCTGGGAAAGGTGATTATCCGAACGAGGATATGGGCAGTGGTGCTGTCGT
ACATGATGATGATGATGATAATGATGATGATGACGATAAAGCTGCAGCTC
CTGCTGCTACTGTTGCTGTCGCAGCTGAGGGAGAGGAAGGTCGTGGTGGC
AATGGAGGTGCGACTGCTATCGCTGAGGGAGAGGAGGACGAACAATCATT
CGAGCGTGCCTCGCATGCATTGCGAGGAGGGAGAGCCAAGAGCAACGGCG
GCATCCTGCTGGAAATGGCATGA
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Synonyms
Publications