jgi.p|Nanoce1779_2|573586, mRNA_634 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|573586
Unique Name	mRNA_634
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2539
Alignment location	scaffold_2:54403..57507 -

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Properties


Property Name	Value
TranscriptId	573672
Track	FilteredModels2
ProteinId	573586

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:54403..57507 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573586	gene_634	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573586	mRNA_634-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_634	CDS_634	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:54403..57507-
coding sequence from alignment at scaffold_2:54403..57507-

mRNA sequence

>mRNA_634 ID=mRNA_634|Name=jgi.p|Nanoce1779_2|573586|organism=Nannochloropsis oceanica|type=mRNA|length=2539bp
GCTGGGGTTTGGAGCGAGGGATGGAGGTGAAGGGAAGGTAGGGGGGGAAG
AGGAGGAGAAAGAGGAGGAGGAGGAGGCGCGAGTGTTCTTGGAGAGGGTG
GGGTGGGTTATGGTGAAGAAGGGGGGCGAGGAGGACGAGGGTATTTGGGA
TATGAAGGCTTCCAAGGTGGACCCGGCGGCAGCGGTTACCCGGACGCTCA
TGTAACGGGAATGCAGTGAAGAGGGAGAAGGCGGAGGACGAGGAGAAGCA
GGGCGGTAGTGACGCTTGGTTGGCGATAGTGTATATATGTAGTGTGAGAT
ACATTCGGAATCAAAAGTAGGCATGCATGTCGGGAGCGATGTATGATAGC
TTCTTCTACCCCATTGATTCAATCAAGCTTCCTTGGCGTGCGGGTGCGCG
GGGAGATGGATGCAAGGACACACTTCGAAGTCAGGTCGGACTGTCGGCAA
ATTGAACGTTGCAGCACAATGCGTGCATTCGAGCTGAGAGCGATAAGATT
GAAGAAGGTTGACTAAGTGAGAAAATGAAAAGAAATCTGCCATATTTTAA
ACTCTCTCTCTCTCTCTCTCTGGACTGTTCCAACACCTCAACGGCACCTG
CGTGGCCCATCACCAAAGGCACCAGTCACCTTTCATTGGATTGTGCAGTC
CCAACCACGCTCATTGACGGATGTGGATTTCCAGCGCTGCAGGCATCGCC
AATTTACATTAAATCCGCCACGTCATGCTGGTTTCAGCACGTGATACCAG
AATTATTTATCAAAAGAAGTGTTATGGGGATTTGGGACATATTTAGACGG
ACAGGGCTTATGTATCAAATTTTCCTTCAATTTATAGCAGTCAAGGACGG
ACAAAAGTGTTTCAGACTTACACAAGCTTTAAAATGGCTCAAGTGCAAAA
TGTCCCGTGCGCCCTTCCCATGGGGATGATATGATATGCATGGCACAGCG
TCTGCCTACTTCGGCACGTGCCATTGTAAGCCCTCCTTGAGGTGTTCTCT
AAAGAAACAATTTCAGCCTTTCAAGCCCCCCGTCCTTTCTATTGTCTTCC
CTGCACTTTCCGAAGTCGATACACACACAATTTTAACCCAAGAAACACGC
ATAAATGTGCACACCGATAGAGGCACTCCTTCGAGGTTGACGTTGCTTTG
GCGACAGCAGCGGCGGGAAGAGATGAGCAAGTTCATCACATCACACCCCT
CGGGCTGCGTGCCGTCTTGCTTTTTCCCACTTTGCCGTGTGTGTGTGAAG
CGCGTCAACATTACTCGCTCTTTTCCTGATGTCGTGATGTCAGTAGGAAA
TTGCTTGTTCGGCCAGGACAGGAGTCGGACGTACTATATAGTACGGAGCT
CTGGAGCCTTCCCTCCTTTTACCTGGCGGTGTACTCACCCTCCCCACCCT
GAACCATTTTCAACCCTTGATACATCCAAACGCTTGCACACAGACGCTCA
TCTGTCTCCATGGAGGAGACTACTGGCCGGGACAATCCGCGGCAACACAG
CTGTAGCGGTACCAGGCATCACCAGTGATAAAAAAAATAAGTAGAACGCA
CACTGCTTTCGTCCTCCTCGTCGCGCACATCCCACGACTTTAAAGCTGTC
CTGGCCACTTCTCATTCCTAGGCCCACTTATCCAAAGGATGGACTTCTGC
TACCCCCTTCCCCGCTGGTCATTTATCGTCCACACTGCCTGCACCACGGT
CTCTCTCCTCCTCCTCCCGCCCGCCATCCACTATGCAGCCCGGATCGAAA
GCCGATTCATTCTCATGACCCCTACACTGTGCCTGGCCTTGGCCTATGAG
AACCTCCTCCTTGTCTTGCCCAACGAACCATATTGCAGCCTGGGCGCGCA
ACGCGTAGGTTGGATAATGAATGCCATCATCCCCCCCCTCTTCCTCGTCG
CCTCCTTCGAGACCGGCTATGTGGTGCACAAACACCGTTCCGTCAAGTAC
CTCGGCATCAACTTCGACGAAGGGAAGCGCGTTGATACGTCCCCCTGCTC
GTGGTTCCTCCGCAACTTGACCCGTCTAATCTCCCTCGCCCTGCTCTTCA
TGGGCCTCGCTGTCAACTTCTCCCTCTTCTTTCCCCACTCCTCCGAAAAC
GCCGGTATGTCCGGGTACCTTGGCCTGGGGCGCGTCGACCATGCGCATTA
CTACATCTCCCTCGTTCCCTCCCTCGTCTTCTCCCTCGTGTCCCTCATCA
TCGCCGCCACCATCCGAAGGTATGGAAAGCACTCCACCCTCCTCATCCCC
CGCTCCTGCGGCTGGAGTTGGATGCTCCTCGGCTCGGTGCTGCAAACCGC
AGGGCAGTTTCCCGCCTCTTCTGCCTTTTACCCCTCCACGTCCATGGCAG
GGTACACGGCATTCCTCGTCTGCGTCGTCTGCACGCACCGGCTGGTGCTC
AAGGACATGGGCGAGGCGGAGAGAATAACGGAATTTTTGCGGCGACAAAA
GGCCGTGCAGCAGCAGCTGGCCGCCACCTGCGTGCTGAGGGAGGGAATGA
GGGCGAGGAGGAGGAAGGACGCGGCGGTCGAGGCGCGGG

protein sequence of jgi.p|Nanoce1779_2|573586

>mRNA_634-protein ID=mRNA_634-protein|Name=jgi.p|Nanoce1779_2|573586|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MHGTASAYFGTCHCKPSLRCSLKKQFQPFKPPVLSIVFPALSEVDTHTIL
TQETRINVHTDRGTPSRLTLLWRQQRREEMSKFITSHPSGCVPSCFFPLC
RVCVKRVNITRSFPDVVMSVGNCLFGQDRSRTYYIVRSSGAFPPFTWRCT
HPPHPEPFSTLDTSKRLHTDAHLSPWRRLLAGTIRGNTAVAVPGITSDKK
N

mRNA from alignment at scaffold_2:54403..57507-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_634 ID=mRNA_634|Name=jgi.p|Nanoce1779_2|573586|organism=Nannochloropsis oceanica|type=mRNA|length=3105bp|location=Sequence derived from alignment at scaffold_2:54403..57507- (Nannochloropsis oceanica)
GCTGGGGTTTGGAGCGAGGGATGGAGGTGAAGGGAAGGTAGGGGGGGAAG
AGGAGGAGAAAGAGGAGGAGGAGGAGGCGCGAGTGTTCTTGGAGAGGGTG
GGGTGGGTTATGGTGAAGAAGGGGGGCGAGGAGGACGAGGGTATTTGGGA
TATGAAGGCTTCCAAGGTGGACCCGGCGGCAGCGGTTACCCGGACGCTCA
TGTAACGGGAATGCAGTGAAGAGGGAGAAGGCGGAGGACGAGGAGAAGCA
GGGCGGTAGTGACGCTTGGTTGGCGATAGTGTATATATGTAGTGTGAGAT
ACATTCGGAATCAAAAGTAGGCATGCATGTCGGGAGCGATGTATGATAGC
TTCTTCTACCCCATTGATTCAATCAAGCTTCCTTGGCGTGCGGGTGCGCG
GGGAGATGGATGCAAGGACACACTTCGAAGTCAGGTCGGACTGTCGGCAA
ATTGAACGTTGCAGCACAATGCGTGCATTCGAGCTGAGAGCGATAAGATT
GAAGAAGGTTGACTAAGTGAGAAAATGAAAAGAAATCTGCCATATTTTAA
ACTCTCTCTCTCTCTCTCTCTGGACTGTTCCAACACCTCAACGGCACCTG
CGTGGCCCATCACCAAAGGCACCAGTCACCTTTCATTGGATTGTGCAGTC
CCAACCACGCTCATTGACGGATGTGGATTTCCAGCGCTGCAGGCATCGCC
AATTTACATTAAATCCGCCACGTCATGCTGGTTTCAGCACGTGATACCAG
AATTATTTATCAAAAGAAGTGTTATGGGGATTTGGGACATATTTAGACGG
ACAGGGCTTATGTATCAAATTTTCCTTCAATTTATAGCAGTCAAGGACGG
ACAAAAGTGTTTCAGACTTACACAAGCTTTAAAATGGCTCAAGTGCAAAA
TGTCCCGTGCGCCCTTCCCATGGGGATGATATGATATGCATGGCACAGCG
TCTGCCTACTTCGGCACGTGCCATTGTAAGCCCTCCTTGAGGTGTTCTCT
AAAGAAACAATTTCAGCCTTTCAAGCCCCCCGTCCTTTCTATTGTCTTCC
CTGCACTTTCCGAAGTCGATACACACACAATTTTAACCCAAGAAACACGC
ATAAATGTGCACACCGATAGAGGCACTCCTTCGAGGTTGACGTTGCTTTG
GCGACAGCAGCGGCGGGAAGAGATGAGCAAGTTCATCACATCACACCCCT
CGGGCTGCGTGCCGTCTTGCTTTTTCCCACTTTGCCGTGTGTGTGTGAAG
CGCGTCAACATTACTCGCTCTTTTCCTGATGTCGTGATGTCAGTAGGAAA
TTGCTTGTTCGGCCAGGACAGGAGTCGGACGTACTATATAGTACGGAGCT
CTGGAGCCTTCCCTCCTTTTACCTGGCGGTGTACTCACCCTCCCCACCCT
GAACCATTTTCAACCCTTGATACATCCAAACGCTTGCACACAGACGCTCA
TCTGTCTCCATGGAGGAGACTACTGGCCGGGACAATCCGCGGCAACACAG
CTGTAGCGGTACCAGGCATCACCAGTGATAAAAAAAATAAGTAGAACGCA
CACTGCTTTCGTCCTCCTCGTCGCGCACATCCCACGACTTTAAAGCTGTC
CTGGCCACTTCTCATTCCTAGGTAATCAATGCCCGGACTAGATATGACGT
GGCATTTTTCTCCTGTCTCCCTCTCCTCATCCCTCCCTCCCAAATGTCAT
GGTCATCTACCCCCCCCCTACTTACCTATCTGACATCCTCTTCCTGACAG
CATGGCGGACAAGAGAATAAAGCGGGGTTGCGACCGCCATACCCGTTATT
GTCCACAGAGAACAGCTTCCCCCCCCCCTTCTCCATTATCTTTTCTCTGG
CCGCGGCTGCTGTCACCCCTCGCCCACGTACTCACTCCCTTTTTCCTCCC
TCCCCCCCTCCTTCCTTCCCTCCCTCCCTCCCTCTCTCACTCCCACCCAC
CACGGCAAGCAAGGCCCACTTATCCAAAGGATGGACTTCTGCTACCCCCT
TCCCCGCTGGTCATTTATCGTCCACACTGCCTGCACCACGGTCTCTCTCC
TCCTCCTCCCGCCCGCCATCCACTATGCAGCCCGGATCGAAAGCCGATTC
ATTCTCATGACCCCTACACTGTGCCTGGCCTTGGCCTATGAGAACCTCCT
CCTTGTCTTGCCCAACGAACCATATTGCAGCCTGGGCGCGCAACGCGTAG
GTTGGATAATGAATGGTAGGTGATACATCGTTTGGAAGGGTACCTCACCT
CTGAGGGTAAATAAACCTCCCCCCCTCTTCCCTTCCCCCCCCCAGGGCCC
TGCCCTCCTTCCCCCCTTCCCCCCTTCCATCCTTCGAGATAGTTCACGAA
CAAAAAACTAATCGTCTCCTCCCCCCCCCCTTCCCCTTCCTGCTCCCCTC
CCTTTCCCTCGTCCCCCCCCATACATGCACTCCATTCAGCCATCATCCCC
CCCCTCTTCCTCGTCGCCTCCTTCGAGACCGGCTATGTGGTGCACAAACA
CCGTTCCGTCAAGTACCTCGGCATCAACTTCGACGAAGGGAAGCGCGTTG
ATACGTCCCCCTGCTCGTGGTTCCTCCGCAACTTGACCCGTCTAATCTCC
CTCGCCCTGCTCTTCATGGGCCTCGCTGTCAACTTCTCCCTCTTCTTTCC
CCACTCCTCCGAAAACGCCGGTATGTCCGGGTACCTTGGCCTGGGGCGCG
TCGACCATGCGCATTACTACATCTCCCTCGTTCCCTCCCTCGTCTTCTCC
CTCGTGTCCCTCATCATCGCCGCCACCATCCGAAGGTATGGAAAGCACTC
CACCCTCCTCATCCCCCGCTCCTGCGGCTGGAGTTGGATGCTCCTCGGCT
CGGTGCTGCAAACCGCAGGGCAGTTTCCCGCCTCTTCTGCCTTTTACCCC
TCCACGTCCATGGCAGGGTACACGGCATTCCTCGTCTGCGTCGTCTGCAC
GCACCGGCTGGTGCTCAAGGACATGGGCGAGGCGGAGAGAATAACGGAAT
TTTTGCGGCGACAAAAGGCCGTGCAGCAGCAGCTGGCCGCCACCTGCGTG
CTGAGGGAGGGAATGAGGGCGAGGAGGAGGAAGGACGCGGCGGTCGAGGC
GCGGG

Coding sequence (CDS) from alignment at scaffold_2:54403..57507-

>mRNA_634 ID=mRNA_634|Name=jgi.p|Nanoce1779_2|573586|organism=Nannochloropsis oceanica|type=CDS|length=605bp|location=Sequence derived from alignment at scaffold_2:54403..57507- (Nannochloropsis oceanica)
ATGCATGGCACAGCGTCTGCCTACTTCGGCACGTGCCATTGTAAGCCCTC
CTTGAGGTGTTCTCTAAAGAAACAATTTCAGCCTTTCAAGCCCCCCGTCC
TTTCTATTGTCTTCCCTGCACTTTCCGAAGTCGATACACACACAATTTTA
ACCCAAGAAACACGCATAAATGTGCACACCGATAGAGGCACTCCTTCGAG
GTTGACGTTGCTTTGGCGACAGCAGCGGCGGGAAGAGATGAGCAAGTTCA
TCACATCACACCCCTCGGGCTGCGTGCCGTCTTGCTTTTTCCCACTTTGC
CGTGTGTGTGTGAAGCGCGTCAACATTACTCGCTCTTTTCCTGATGTCGT
GATGTCAGTAGGAAATTGCTTGTTCGGCCAGGACAGGAGTCGGACGTACT
ATATAGTACGGAGCTCTGGAGCCTTCCCTCCTTTTACCTGGCGGTGTACT
CACCCTCCCCACCCTGAACCATTTTCAACCCTTGATACATCCAAACGCTT
GCACACAGACGCTCATCTGTCTCCATGGAGGAGACTACTGGCCGGGACAA
TCCGCGGCAACACAGCTGTAGCGGTACCAGGCATCACCAGTGATAAAAAA
AATAA

Synonyms

Publications