jgi.p|Nanoce1779_2|594656, mRNA_6339 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|594656
Unique Name	mRNA_6339
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1413
Alignment location	scaffold_15:384621..386033 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	594742
Track	FilteredModels2
ProteinId	594656

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:384621..386033 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594656	gene_6339	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594656	mRNA_6339-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6339	CDS_6339	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:384621..386033+
coding sequence from alignment at scaffold_15:384621..386033+

mRNA sequence

>mRNA_6339 ID=mRNA_6339|Name=jgi.p|Nanoce1779_2|594656|organism=Nannochloropsis oceanica|type=mRNA|length=1413bp
CTCCTCCTGCCGTGCTGCCATGCCTTCCTCAATACATCTTCTTACGCTTG
TCGAAACCCCATCCACACGCACACAAACAGGTAGAGTTTTTTGCACAAGT
CAACTGCAAGCCCGACCGCTGTTTTTGCCCCACGATGCATCCATAATCCC
TAGTCCACCTCAGCCAGCACCAGCCATCTCGTCGTGCACGTACGTACACT
CCAATACGTGAGGTGGCCACGAGACCTCTCCCCTTGCCCTCCTTTTAAAT
GCGGCGGGAGCTGCTTCTCCACGCCCCTTTCTTTCTCCTTGCCATGTCTC
TGCTACTCATCCGAGGACATGCCTTTGTTATGGCGCTGGGTGCTTCAGCT
GCCGCACGAAGGTTAACACCACCACTGCTGACCTCCTCTCTCCGCACTAC
TGTCCTGGTCGCCGTGCACAACTCCACTACTCACGGAGACGACGACGACG
TTGCAAGAAGAAGACGTCAATTGTATAGTCCGCGTTGTCTTTTGTCTTCG
GGGCCATTATCCCCAAAAATACCACAAACTACGCGCGAGGCGCTCATTGC
CCAGACCAAGGCCAAGGTGGCTAAAGTCGAAGCCAAGAAAATGCTCATGG
TCAACGCCCGCCGCGACAAGATGCGTCGGCACAAACGCAAGCGAGAAGCA
CAAGAATGCAGCATAACCGAGGCCGAGCGAGACGCAAGAAGGGCACGAGA
CGCGCAAGCTACGGCATGGCTCGAAGAAGTTTACGCTTTGGACGCAGGCC
TCTCCTCGCAACGGGAGGTCTTGTCCCCACGTCTCCGCATCGCGATTGAC
TTGGTGTACGATTCAACATCTAGTCTCTATTCCTCTCTTGGTCGTCAATT
AGGATGTGCTTATGGCCTGATGCGGAAAGCCTCCCGGGTCGACCTCATCC
CCAGTGTCCATTTAACTTGCGCAAAGGGAGAGGTCATGGAGGCATTGGCC
AAGAATGGAGGGAACGCCTGGCGCATGCACCGGCATGCTGCCTCTGTTTT
TGACGTCTTTCCAAACAAAGAACGCTTGATTTACTTGACGCCTGACTCCC
CTAATATATTGGAAGAAATCGACCCGAGCAAGGTCTACGTCATTGGTGGC
TTGGTCGACCGTGTGGTGCTAAAAAATAAGTCGTACAGTCGCGCTGCTAC
CCATGGAGTGGCCACGGCTCGGCTGCCATTGAAAGAATTTTTTAGCAAGC
AGGGGACGAAGGGTCAGAAGCACATGTCAAATATGGCCTTGGCTGTGGAT
CGTGTGATTCAGATTCTGATGAAGAAATATGAGGTGGATGACTGGGATGA
GGCCCTGTCAGCAGTCTTTCCGGGAGCAGTGGCGATGGTAGGAAGGGGGG
TAGGAGAAGAGGGAGTGAACAAAAACGATGCATCAAATTAAATTAAAACA
AGGCATCAGCTGT

protein sequence of jgi.p|Nanoce1779_2|594656

>mRNA_6339-protein ID=mRNA_6339-protein|Name=jgi.p|Nanoce1779_2|594656|organism=Nannochloropsis oceanica|type=polypeptide|length=381bp
MRRELLLHAPFFLLAMSLLLIRGHAFVMALGASAAARRLTPPLLTSSLRT
TVLVAVHNSTTHGDDDDVARRRRQLYSPRCLLSSGPLSPKIPQTTREALI
AQTKAKVAKVEAKKMLMVNARRDKMRRHKRKREAQECSITEAERDARRAR
DAQATAWLEEVYALDAGLSSQREVLSPRLRIAIDLVYDSTSSLYSSLGRQ
LGCAYGLMRKASRVDLIPSVHLTCAKGEVMEALAKNGGNAWRMHRHAASV
FDVFPNKERLIYLTPDSPNILEEIDPSKVYVIGGLVDRVVLKNKSYSRAA
THGVATARLPLKEFFSKQGTKGQKHMSNMALAVDRVIQILMKKYEVDDWD
EALSAVFPGAVAMVGRGVGEEGVNKNDASN*

mRNA from alignment at scaffold_15:384621..386033+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6339 ID=mRNA_6339|Name=jgi.p|Nanoce1779_2|594656|organism=Nannochloropsis oceanica|type=mRNA|length=1413bp|location=Sequence derived from alignment at scaffold_15:384621..386033+ (Nannochloropsis oceanica)
CTCCTCCTGCCGTGCTGCCATGCCTTCCTCAATACATCTTCTTACGCTTG
TCGAAACCCCATCCACACGCACACAAACAGGTAGAGTTTTTTGCACAAGT
CAACTGCAAGCCCGACCGCTGTTTTTGCCCCACGATGCATCCATAATCCC
TAGTCCACCTCAGCCAGCACCAGCCATCTCGTCGTGCACGTACGTACACT
CCAATACGTGAGGTGGCCACGAGACCTCTCCCCTTGCCCTCCTTTTAAAT
GCGGCGGGAGCTGCTTCTCCACGCCCCTTTCTTTCTCCTTGCCATGTCTC
TGCTACTCATCCGAGGACATGCCTTTGTTATGGCGCTGGGTGCTTCAGCT
GCCGCACGAAGGTTAACACCACCACTGCTGACCTCCTCTCTCCGCACTAC
TGTCCTGGTCGCCGTGCACAACTCCACTACTCACGGAGACGACGACGACG
TTGCAAGAAGAAGACGTCAATTGTATAGTCCGCGTTGTCTTTTGTCTTCG
GGGCCATTATCCCCAAAAATACCACAAACTACGCGCGAGGCGCTCATTGC
CCAGACCAAGGCCAAGGTGGCTAAAGTCGAAGCCAAGAAAATGCTCATGG
TCAACGCCCGCCGCGACAAGATGCGTCGGCACAAACGCAAGCGAGAAGCA
CAAGAATGCAGCATAACCGAGGCCGAGCGAGACGCAAGAAGGGCACGAGA
CGCGCAAGCTACGGCATGGCTCGAAGAAGTTTACGCTTTGGACGCAGGCC
TCTCCTCGCAACGGGAGGTCTTGTCCCCACGTCTCCGCATCGCGATTGAC
TTGGTGTACGATTCAACATCTAGTCTCTATTCCTCTCTTGGTCGTCAATT
AGGATGTGCTTATGGCCTGATGCGGAAAGCCTCCCGGGTCGACCTCATCC
CCAGTGTCCATTTAACTTGCGCAAAGGGAGAGGTCATGGAGGCATTGGCC
AAGAATGGAGGGAACGCCTGGCGCATGCACCGGCATGCTGCCTCTGTTTT
TGACGTCTTTCCAAACAAAGAACGCTTGATTTACTTGACGCCTGACTCCC
CTAATATATTGGAAGAAATCGACCCGAGCAAGGTCTACGTCATTGGTGGC
TTGGTCGACCGTGTGGTGCTAAAAAATAAGTCGTACAGTCGCGCTGCTAC
CCATGGAGTGGCCACGGCTCGGCTGCCATTGAAAGAATTTTTTAGCAAGC
AGGGGACGAAGGGTCAGAAGCACATGTCAAATATGGCCTTGGCTGTGGAT
CGTGTGATTCAGATTCTGATGAAGAAATATGAGGTGGATGACTGGGATGA
GGCCCTGTCAGCAGTCTTTCCGGGAGCAGTGGCGATGGTAGGAAGGGGGG
TAGGAGAAGAGGGAGTGAACAAAAACGATGCATCAAATTAAATTAAAACA
AGGCATCAGCTGT

Coding sequence (CDS) from alignment at scaffold_15:384621..386033+

>mRNA_6339 ID=mRNA_6339|Name=jgi.p|Nanoce1779_2|594656|organism=Nannochloropsis oceanica|type=CDS|length=1143bp|location=Sequence derived from alignment at scaffold_15:384621..386033+ (Nannochloropsis oceanica)
ATGCGGCGGGAGCTGCTTCTCCACGCCCCTTTCTTTCTCCTTGCCATGTC
TCTGCTACTCATCCGAGGACATGCCTTTGTTATGGCGCTGGGTGCTTCAG
CTGCCGCACGAAGGTTAACACCACCACTGCTGACCTCCTCTCTCCGCACT
ACTGTCCTGGTCGCCGTGCACAACTCCACTACTCACGGAGACGACGACGA
CGTTGCAAGAAGAAGACGTCAATTGTATAGTCCGCGTTGTCTTTTGTCTT
CGGGGCCATTATCCCCAAAAATACCACAAACTACGCGCGAGGCGCTCATT
GCCCAGACCAAGGCCAAGGTGGCTAAAGTCGAAGCCAAGAAAATGCTCAT
GGTCAACGCCCGCCGCGACAAGATGCGTCGGCACAAACGCAAGCGAGAAG
CACAAGAATGCAGCATAACCGAGGCCGAGCGAGACGCAAGAAGGGCACGA
GACGCGCAAGCTACGGCATGGCTCGAAGAAGTTTACGCTTTGGACGCAGG
CCTCTCCTCGCAACGGGAGGTCTTGTCCCCACGTCTCCGCATCGCGATTG
ACTTGGTGTACGATTCAACATCTAGTCTCTATTCCTCTCTTGGTCGTCAA
TTAGGATGTGCTTATGGCCTGATGCGGAAAGCCTCCCGGGTCGACCTCAT
CCCCAGTGTCCATTTAACTTGCGCAAAGGGAGAGGTCATGGAGGCATTGG
CCAAGAATGGAGGGAACGCCTGGCGCATGCACCGGCATGCTGCCTCTGTT
TTTGACGTCTTTCCAAACAAAGAACGCTTGATTTACTTGACGCCTGACTC
CCCTAATATATTGGAAGAAATCGACCCGAGCAAGGTCTACGTCATTGGTG
GCTTGGTCGACCGTGTGGTGCTAAAAAATAAGTCGTACAGTCGCGCTGCT
ACCCATGGAGTGGCCACGGCTCGGCTGCCATTGAAAGAATTTTTTAGCAA
GCAGGGGACGAAGGGTCAGAAGCACATGTCAAATATGGCCTTGGCTGTGG
ATCGTGTGATTCAGATTCTGATGAAGAAATATGAGGTGGATGACTGGGAT
GAGGCCCTGTCAGCAGTCTTTCCGGGAGCAGTGGCGATGGTAGGAAGGGG
GGTAGGAGAAGAGGGAGTGAACAAAAACGATGCATCAAATTAA

Synonyms

Publications