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Properties
| Property Name | Value |
|---|
| TranscriptId | 594741 |
| Track | FilteredModels2 |
| ProteinId | 594655 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_15 | supercontig | scaffold_15:383244..384645 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6338 ID=mRNA_6338|Name=jgi.p|Nanoce1779_2|594655|organism=Nannochloropsis oceanica|type=mRNA|length=1402bp
AGGCATGGCAGCACGGCAGGAGGAGGGGGCCACTACTTAGCGATCTGCAT
GACTGACTTATAATAACCATGTACACAGCACAAAATACACACTGGCCAGA
CTGCAACTTTGTAGCCTCTTGTGAGTACGTCCATGCCCTTATCGTCGCCA
AGGAGGCGCACGCCTGCCCACCGAAGTCTTGTCAGTGCCCTCTTCCCAGT
TGGTCTACTCCTCATTGCTGCCCACAACGCATCGCTACCTACTACCGCAG
CTTTTGTGCCTCCCAATCCGTCTACCTCGCCGCTGCTTCATCATCGCATA
CACATCCTTCGACCCCAGCCTGACTCACCCACCTCAAGCCATCTCCGTAC
GCATACGCGCAGCATCATCACCATGAGAAGCATCAAGGCTTCCTCCACCC
CTCCTCCTTCTTCTCCCTTTTCGTCCTCATTTTCCCAGAGCACTCTCCTT
AAGGGCTTCGAGCTCGTCGGAAAATCAACTCGGTGGACAGTTGCCAGCTT
AGTGGCTGTTGTCCTTCTCTTGCGACGGGACGCGGCCATGGTTAACTTCA
CCGTCGGTGCCATTTTAAATGCTTTGCTTGGTAAGACGCTCAAGAGAATA
ATCAAGGAAGCCCGGCCTGATGGTGCGGTTCTTGAAGACCCCGGCATGCC
CAGCTCGCATGCCATGGCGTTGTTCTATATGACTAGCTTTATAACGGCTG
CCTTGTGTGAGAGTAAGGGGTTAGGGGGAGCTCTCCCTCTTTGGTGGCCT
TTCAACTACATCACAACCATTTCCTCGGTCATATTGTACGTGCTGACAGC
AAGCTCATGGCGGGTCTTTTCGGGGTTACACACACCAGCGCAAATTTTGG
TGGGAGCAGGGATGGGGAGTGGGGTGGGAGTCGGGTGGCAGTTTATGTGT
CGGACACGGATGAATGAGGAGGTGGGGAGGTGGTTGTACGCGAGGTTTGA
GGGAGGGCGGGTGCCATTATCGTACTTGGTGGGGGTGATGATTATAGGAG
CGTTGACAGTGGGTTCTGTAGAGAGGAAGTTTGCGAAGGCGATGAGGCAG
ATATTGCGTTATGTAGGAGAGGAGGAAGGGAGGAAGGACAAGGGACTGTG
ACAGGGAAATGGGGGAGAAGTCCGATAATAGTTACTGAACTAGGCATGCA
AAGCGAGTAAAATTCATGAAAAGAATCAATCGGACAAAGTTATGAGAGCT
ATTCAACAAAAAAGAGCACGCAGTCAACTGATTTGCATATTACCCCCCCT
GGTAGATGGGTAGATGAGGTCGTGCCTGATTGTATGTTACTGGAAAATTA
GACCCGAAACCAGCAATTTGCTAAAGCAAATAGCATAATCATCATTGTTT
CCTAGACGACCAGATTCTCAAGGTGCATTTCCAGGTTGAAACTAGTACCT
GA back to topprotein sequence of jgi.p|Nanoce1779_2|594655 >mRNA_6338-protein ID=mRNA_6338-protein|Name=jgi.p|Nanoce1779_2|594655|organism=Nannochloropsis oceanica|type=polypeptide|length=323bp
MPLSSPRRRTPAHRSLVSALFPVGLLLIAAHNASLPTTAAFVPPNPSTSP
LLHHRIHILRPQPDSPTSSHLRTHTRSIITMRSIKASSTPPPSSPFSSSF
SQSTLLKGFELVGKSTRWTVASLVAVVLLLRRDAAMVNFTVGAILNALLG
KTLKRIIKEARPDGAVLEDPGMPSSHAMALFYMTSFITAALCESKGLGGA
LPLWWPFNYITTISSVILYVLTASSWRVFSGLHTPAQILVGAGMGSGVGV
GWQFMCRTRMNEEVGRWLYARFEGGRVPLSYLVGVMIIGALTVGSVERKF
AKAMRQILRYVGEEEGRKDKGL* back to topmRNA from alignment at scaffold_15:383244..384645- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6338 ID=mRNA_6338|Name=jgi.p|Nanoce1779_2|594655|organism=Nannochloropsis oceanica|type=mRNA|length=1402bp|location=Sequence derived from alignment at scaffold_15:383244..384645- (Nannochloropsis oceanica)
AGGCATGGCAGCACGGCAGGAGGAGGGGGCCACTACTTAGCGATCTGCAT
GACTGACTTATAATAACCATGTACACAGCACAAAATACACACTGGCCAGA
CTGCAACTTTGTAGCCTCTTGTGAGTACGTCCATGCCCTTATCGTCGCCA
AGGAGGCGCACGCCTGCCCACCGAAGTCTTGTCAGTGCCCTCTTCCCAGT
TGGTCTACTCCTCATTGCTGCCCACAACGCATCGCTACCTACTACCGCAG
CTTTTGTGCCTCCCAATCCGTCTACCTCGCCGCTGCTTCATCATCGCATA
CACATCCTTCGACCCCAGCCTGACTCACCCACCTCAAGCCATCTCCGTAC
GCATACGCGCAGCATCATCACCATGAGAAGCATCAAGGCTTCCTCCACCC
CTCCTCCTTCTTCTCCCTTTTCGTCCTCATTTTCCCAGAGCACTCTCCTT
AAGGGCTTCGAGCTCGTCGGAAAATCAACTCGGTGGACAGTTGCCAGCTT
AGTGGCTGTTGTCCTTCTCTTGCGACGGGACGCGGCCATGGTTAACTTCA
CCGTCGGTGCCATTTTAAATGCTTTGCTTGGTAAGACGCTCAAGAGAATA
ATCAAGGAAGCCCGGCCTGATGGTGCGGTTCTTGAAGACCCCGGCATGCC
CAGCTCGCATGCCATGGCGTTGTTCTATATGACTAGCTTTATAACGGCTG
CCTTGTGTGAGAGTAAGGGGTTAGGGGGAGCTCTCCCTCTTTGGTGGCCT
TTCAACTACATCACAACCATTTCCTCGGTCATATTGTACGTGCTGACAGC
AAGCTCATGGCGGGTCTTTTCGGGGTTACACACACCAGCGCAAATTTTGG
TGGGAGCAGGGATGGGGAGTGGGGTGGGAGTCGGGTGGCAGTTTATGTGT
CGGACACGGATGAATGAGGAGGTGGGGAGGTGGTTGTACGCGAGGTTTGA
GGGAGGGCGGGTGCCATTATCGTACTTGGTGGGGGTGATGATTATAGGAG
CGTTGACAGTGGGTTCTGTAGAGAGGAAGTTTGCGAAGGCGATGAGGCAG
ATATTGCGTTATGTAGGAGAGGAGGAAGGGAGGAAGGACAAGGGACTGTG
ACAGGGAAATGGGGGAGAAGTCCGATAATAGTTACTGAACTAGGCATGCA
AAGCGAGTAAAATTCATGAAAAGAATCAATCGGACAAAGTTATGAGAGCT
ATTCAACAAAAAAGAGCACGCAGTCAACTGATTTGCATATTACCCCCCCT
GGTAGATGGGTAGATGAGGTCGTGCCTGATTGTATGTTACTGGAAAATTA
GACCCGAAACCAGCAATTTGCTAAAGCAAATAGCATAATCATCATTGTTT
CCTAGACGACCAGATTCTCAAGGTGCATTTCCAGGTTGAAACTAGTACCT
GA back to topCoding sequence (CDS) from alignment at scaffold_15:383244..384645- >mRNA_6338 ID=mRNA_6338|Name=jgi.p|Nanoce1779_2|594655|organism=Nannochloropsis oceanica|type=CDS|length=969bp|location=Sequence derived from alignment at scaffold_15:383244..384645- (Nannochloropsis oceanica)
ATGCCCTTATCGTCGCCAAGGAGGCGCACGCCTGCCCACCGAAGTCTTGT
CAGTGCCCTCTTCCCAGTTGGTCTACTCCTCATTGCTGCCCACAACGCAT
CGCTACCTACTACCGCAGCTTTTGTGCCTCCCAATCCGTCTACCTCGCCG
CTGCTTCATCATCGCATACACATCCTTCGACCCCAGCCTGACTCACCCAC
CTCAAGCCATCTCCGTACGCATACGCGCAGCATCATCACCATGAGAAGCA
TCAAGGCTTCCTCCACCCCTCCTCCTTCTTCTCCCTTTTCGTCCTCATTT
TCCCAGAGCACTCTCCTTAAGGGCTTCGAGCTCGTCGGAAAATCAACTCG
GTGGACAGTTGCCAGCTTAGTGGCTGTTGTCCTTCTCTTGCGACGGGACG
CGGCCATGGTTAACTTCACCGTCGGTGCCATTTTAAATGCTTTGCTTGGT
AAGACGCTCAAGAGAATAATCAAGGAAGCCCGGCCTGATGGTGCGGTTCT
TGAAGACCCCGGCATGCCCAGCTCGCATGCCATGGCGTTGTTCTATATGA
CTAGCTTTATAACGGCTGCCTTGTGTGAGAGTAAGGGGTTAGGGGGAGCT
CTCCCTCTTTGGTGGCCTTTCAACTACATCACAACCATTTCCTCGGTCAT
ATTGTACGTGCTGACAGCAAGCTCATGGCGGGTCTTTTCGGGGTTACACA
CACCAGCGCAAATTTTGGTGGGAGCAGGGATGGGGAGTGGGGTGGGAGTC
GGGTGGCAGTTTATGTGTCGGACACGGATGAATGAGGAGGTGGGGAGGTG
GTTGTACGCGAGGTTTGAGGGAGGGCGGGTGCCATTATCGTACTTGGTGG
GGGTGATGATTATAGGAGCGTTGACAGTGGGTTCTGTAGAGAGGAAGTTT
GCGAAGGCGATGAGGCAGATATTGCGTTATGTAGGAGAGGAGGAAGGGAG
GAAGGACAAGGGACTGTGA back to top
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