jgi.p|Nanoce1779_2|594646, mRNA_6337 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594646
Unique NamemRNA_6337
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length415
Alignment locationscaffold_15:380009..380486 +

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Properties
Property NameValue
TranscriptId594732
TrackFilteredModels2
ProteinId594646
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:380009..380486 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594646gene_6337Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594646mRNA_6337-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6337CDS_6337Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6337 ID=mRNA_6337|Name=jgi.p|Nanoce1779_2|594646|organism=Nannochloropsis oceanica|type=mRNA|length=415bp
GGACGAGGAAGGGGCTAGGGAGTCGTCACATGACGACAAGATGGATGGAC
GTAGGCGCGTCTACGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGG
GATCATCAGTCCCGAAAGAGAAAGAAGGCAAAACCGGACCCGTTCCTCCG
TGCGCGGCAACAAGCACTGGAGAAGCGCCACGAGTACGAAGCAGAGATAC
AGCGTCACAGAGAGAAAGTCCAAGCAAGAGAGAAGAGCATGAAAATTCGC
AAGGCCCGGCATGCATTGATGAGTAGAAAGACGAAGAAAGGGCAACCGAT
CATGAAGACGAGGATAAGCAACATCTTGGAGAAGTTGAAGAAGGAGTCGA
AACAGCCGCGGCAGCAGCTGCAGCGCTGAGAGAGGAGAAAGAAAGAAATA
AGCACAAGTGTACAT
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protein sequence of jgi.p|Nanoce1779_2|594646

>mRNA_6337-protein ID=mRNA_6337-protein|Name=jgi.p|Nanoce1779_2|594646|organism=Nannochloropsis oceanica|type=polypeptide|length=113bp
MDGRRRVYEEEEEEEEEEEGDHQSRKRKKAKPDPFLRARQQALEKRHEYE
AEIQRHREKVQAREKSMKIRKARHALMSRKTKKGQPIMKTRISNILEKLK
KESKQPRQQLQR*
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mRNA from alignment at scaffold_15:380009..380486+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6337 ID=mRNA_6337|Name=jgi.p|Nanoce1779_2|594646|organism=Nannochloropsis oceanica|type=mRNA|length=478bp|location=Sequence derived from alignment at scaffold_15:380009..380486+ (Nannochloropsis oceanica)
GGACGAGGAAGGGGCTAGGGAGTCGTCACATGACGACAAGATGGATGGAC
GTAGGCGCGTCTACGAAGAGGCCAAGGAGAAGGAAGAGGAGGAGGAAGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGGGGATCATCAGTCCCGAAAGAGAAAGAAGGCAAAACCGG
ACCCGTTCCTCCGTGCGCGGCAACAAGCACTGGAGAAGCGCCACGAGTAC
GAAGCAGAGATACAGCGTCACAGAGAGAAAGTCCAAGCAAGAGAGAAGAG
CATGAAAATTCGCAAGGCCCGGCATGCATTGATGAGTAGAAAGACGAAGA
AAGGGCAACCGATCATGAAGACGAGGATAAGCAACATCTTGGAGAAGTTG
AAGAAGGAGTCGAAACAGCCGCGGCAGCAGCTGCAGCGCTGAGAGAGGAG
AAAGAAAGAAATAAGCACAAGTGTACAT
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Coding sequence (CDS) from alignment at scaffold_15:380009..380486+

>mRNA_6337 ID=mRNA_6337|Name=jgi.p|Nanoce1779_2|594646|organism=Nannochloropsis oceanica|type=CDS|length=678bp|location=Sequence derived from alignment at scaffold_15:380009..380486+ (Nannochloropsis oceanica)
ATGGATGGACGTAGGCGCGTCTACGAAGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGGGGATCATCAGTCCCGAAAGAGAAAGAAGGCAAAACCGGACC
CGTTCCTCCGTGCGCGGCAACAAGCACTGGAGAAGCGCCACGAGTACGAA
GCAGAGATACAGCGTCACAGAGAGAAAGTCCAAGCAAGAGAGAAGAGCAT
GAAAATTCGCAAGGCCCGGCATGCATTGATGAGTAGAAAGACGAAGAAAG
GGCAACCGATCATGAAGACGAGGATAAGCAACATCTTGGAGAAGTTGAAG
AAGGAGTCGAAACAGCCGCGGCAGCAGCTGCAGCGCTGAATGGATGGACG
TAGGCGCGTCTACGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGG
ATCATCAGTCCCGAAAGAGAAAGAAGGCAAAACCGGACCCGTTCCTCCGT
GCGCGGCAACAAGCACTGGAGAAGCGCCACGAGTACGAAGCAGAGATACA
GCGTCACAGAGAGAAAGTCCAAGCAAGAGAGAAGAGCATGAAAATTCGCA
AGGCCCGGCATGCATTGATGAGTAGAAAGACGAAGAAAGGGCAACCGATC
ATGAAGACGAGGATAAGCAACATCTTGGAGAAGTTGAAGAAGGAGTCGAA
ACAGCCGCGGCAGCAGCTGCAGCGCTGA
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Synonyms
Publications