jgi.p|Nanoce1779_2|649876, mRNA_6333 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|649876
Unique NamemRNA_6333
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1715
Alignment locationscaffold_15:365680..367394 -

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Properties
Property NameValue
TranscriptId649962
TrackFilteredModels2
ProteinId649876
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:365680..367394 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|649876gene_6333Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|649876mRNA_6333-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6333CDS_6333Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6333 ID=mRNA_6333|Name=jgi.p|Nanoce1779_2|649876|organism=Nannochloropsis oceanica|type=mRNA|length=1715bp
ATGCCTCCGACCTTCTCACCCCCCTGCCCACTCCAAGACATTGAGGACGC
CGCATCTACCTCCTCAGCCTCATTTGGCAGCGTGGCTATTCTGGACAGCT
GCACGGGCTGCATATCCTGCCGTGTCCTCGCTCCTGAAATTTTTCACGAG
GCCCGCAAGACTTCGTCAGACCCGACGGTGTTCACCGAGGTAGCACCAGG
GCGGCCGCTTCAATCGTTGGAGGAGGCACAGCAAGTCCGAGAGGCTATTA
TGTCCTGCCCCGTGCATGCCATCAAGTGGGTGAAGCGCCCTCGGGATTTA
AAAGTTCGTCCGCTGACTGAGGGCTACCCCAAGCCGGTCTCAGTGGAAAA
AAAAGAGAATGTATTCTTGGCGGGCGTCCCGAGTAAGAAGCTATTTGGGG
GCGCGTCGTTTTTGATATCGAGAGGGGGGAATGGGAAGGACCGAAATATG
TTGATTGATACGCCCGACTGTGACGAGGCATTGGTGGAGTATTTAAAGAA
AAGGGGTGGGTTGGACTACATAGTATTCACGCACAGAGATCACATCGCGT
GCCATCGCGAATGGAAACAGGCCTTCCCCGACGTGCAACGTGTGTTGCAC
GCCGACGATTTCACTGACGAAACCATCAAATTTGAAGTCAAGCTGCAAGG
CAGCGGTGGCAGTGGTGGCAGCAGCCGCAGCACTGCCCCCTTAGTCTGTT
CCTTGCCCGGGTGGGAGGAGGAAGTACAGTTGATTCACGGGCCCGGGCAC
ACACCTGGGTCTATTTTTGTCGTGTTTAAAAACAAATACCTATTCACGGG
TGACTCTCTTCATTATTCGCGCATTGAGGGGCATTTGGTCGGTTTCCGAC
TGCAATGCTGGGAGAGCTGGTCGAGGCAGCAGGCGTCGTGGGAGGCCCTT
CTCCGTCGGCCGGTCCCCTTCCTCCACGTCTTACCTGGCCATGGCGAACC
CCACCGATTCGCTTCTGTCGAAGAGGCACACGCGAGCTTGGAGGCATGCT
TAAAGTGGGCGAAGCAACTGCCGGATGGGTATACGCCAATGGGGAGATTT
CGGATGTGGGCGATAACGAGGACGACGAGTAAAAGGCGGTGGCTGCGGTG
GGTGGTTGACAACGTGGTGCTGCCCGCCGGGTCAAAAGTGGCGATTCCAT
TGTATCGGCTGGATGAGGGTGATAGGGATGGACGGAGAAAGGTTTTCGGG
GGAATGTCCTCGATGGTGGTTGCGGCCGTGTCGATGCTTGTCGGGGTGGG
GGTGGGATTGGTGGCTGCAGGGGCGGGAGGAGGAGGGGGAGGAAGGGGGG
GAAGATGGGGGGGAAGATGAGTTGAGAGAGGAGGAAACAGTGTATAGATT
GATGAGGAAAATGAGGTAAGTCTGCTTGGGGACAGAAAATGTCACTCCAG
GGAGGGAAAGCACACGAGCAAGAAGAGAAAATGAACATGGAAAATGCCTC
CAAGCCTACATAATGGCGGAAGCGCGTGAAATCTCCACGGAGAGGTTTGC
ATTGCTCGTTTTATCCCCTTTCAGTTTGTACTACAATCTCTTTTTGCCCC
CCTCGTCTCTTTGCATTCTTCGGTCAAATACACCCCCTTCCATTCCACCC
CTCCTTCCCTTCCTCCCTCATTAACACCCTACAACTATTTATTTTACAAG
GCATTCAACCGCTCCTTCATATGCTTCAATTCCAACGCCTCCCTCTCCTC
CTCTTCTGCCGTTGT
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protein sequence of jgi.p|Nanoce1779_2|649876

>mRNA_6333-protein ID=mRNA_6333-protein|Name=jgi.p|Nanoce1779_2|649876|organism=Nannochloropsis oceanica|type=polypeptide|length=440bp
MPPTFSPPCPLQDIEDAASTSSASFGSVAILDSCTGCISCRVLAPEIFHE
ARKTSSDPTVFTEVAPGRPLQSLEEAQQVREAIMSCPVHAIKWVKRPRDL
KVRPLTEGYPKPVSVEKKENVFLAGVPSKKLFGGASFLISRGGNGKDRNM
LIDTPDCDEALVEYLKKRGGLDYIVFTHRDHIACHREWKQAFPDVQRVLH
ADDFTDETIKFEVKLQGSGGSGGSSRSTAPLVCSLPGWEEEVQLIHGPGH
TPGSIFVVFKNKYLFTGDSLHYSRIEGHLVGFRLQCWESWSRQQASWEAL
LRRPVPFLHVLPGHGEPHRFASVEEAHASLEACLKWAKQLPDGYTPMGRF
RMWAITRTTSKRRWLRWVVDNVVLPAGSKVAIPLYRLDEGDRDGRRKVFG
GMSSMVVAAVSMLVGVGVGLVAAGAGGGGGGRGGRWGGR*
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mRNA from alignment at scaffold_15:365680..367394-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6333 ID=mRNA_6333|Name=jgi.p|Nanoce1779_2|649876|organism=Nannochloropsis oceanica|type=mRNA|length=1715bp|location=Sequence derived from alignment at scaffold_15:365680..367394- (Nannochloropsis oceanica)
ATGCCTCCGACCTTCTCACCCCCCTGCCCACTCCAAGACATTGAGGACGC
CGCATCTACCTCCTCAGCCTCATTTGGCAGCGTGGCTATTCTGGACAGCT
GCACGGGCTGCATATCCTGCCGTGTCCTCGCTCCTGAAATTTTTCACGAG
GCCCGCAAGACTTCGTCAGACCCGACGGTGTTCACCGAGGTAGCACCAGG
GCGGCCGCTTCAATCGTTGGAGGAGGCACAGCAAGTCCGAGAGGCTATTA
TGTCCTGCCCCGTGCATGCCATCAAGTGGGTGAAGCGCCCTCGGGATTTA
AAAGTTCGTCCGCTGACTGAGGGCTACCCCAAGCCGGTCTCAGTGGAAAA
AAAAGAGAATGTATTCTTGGCGGGCGTCCCGAGTAAGAAGCTATTTGGGG
GCGCGTCGTTTTTGATATCGAGAGGGGGGAATGGGAAGGACCGAAATATG
TTGATTGATACGCCCGACTGTGACGAGGCATTGGTGGAGTATTTAAAGAA
AAGGGGTGGGTTGGACTACATAGTATTCACGCACAGAGATCACATCGCGT
GCCATCGCGAATGGAAACAGGCCTTCCCCGACGTGCAACGTGTGTTGCAC
GCCGACGATTTCACTGACGAAACCATCAAATTTGAAGTCAAGCTGCAAGG
CAGCGGTGGCAGTGGTGGCAGCAGCCGCAGCACTGCCCCCTTAGTCTGTT
CCTTGCCCGGGTGGGAGGAGGAAGTACAGTTGATTCACGGGCCCGGGCAC
ACACCTGGGTCTATTTTTGTCGTGTTTAAAAACAAATACCTATTCACGGG
TGACTCTCTTCATTATTCGCGCATTGAGGGGCATTTGGTCGGTTTCCGAC
TGCAATGCTGGGAGAGCTGGTCGAGGCAGCAGGCGTCGTGGGAGGCCCTT
CTCCGTCGGCCGGTCCCCTTCCTCCACGTCTTACCTGGCCATGGCGAACC
CCACCGATTCGCTTCTGTCGAAGAGGCACACGCGAGCTTGGAGGCATGCT
TAAAGTGGGCGAAGCAACTGCCGGATGGGTATACGCCAATGGGGAGATTT
CGGATGTGGGCGATAACGAGGACGACGAGTAAAAGGCGGTGGCTGCGGTG
GGTGGTTGACAACGTGGTGCTGCCCGCCGGGTCAAAAGTGGCGATTCCAT
TGTATCGGCTGGATGAGGGTGATAGGGATGGACGGAGAAAGGTTTTCGGG
GGAATGTCCTCGATGGTGGTTGCGGCCGTGTCGATGCTTGTCGGGGTGGG
GGTGGGATTGGTGGCTGCAGGGGCGGGAGGAGGAGGGGGAGGAAGGGGGG
GAAGATGGGGGGGAAGATGAGTTGAGAGAGGAGGAAACAGTGTATAGATT
GATGAGGAAAATGAGGTAAGTCTGCTTGGGGACAGAAAATGTCACTCCAG
GGAGGGAAAGCACACGAGCAAGAAGAGAAAATGAACATGGAAAATGCCTC
CAAGCCTACATAATGGCGGAAGCGCGTGAAATCTCCACGGAGAGGTTTGC
ATTGCTCGTTTTATCCCCTTTCAGTTTGTACTACAATCTCTTTTTGCCCC
CCTCGTCTCTTTGCATTCTTCGGTCAAATACACCCCCTTCCATTCCACCC
CTCCTTCCCTTCCTCCCTCATTAACACCCTACAACTATTTATTTTACAAG
GCATTCAACCGCTCCTTCATATGCTTCAATTCCAACGCCTCCCTCTCCTC
CTCTTCTGCCGTTGT
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Coding sequence (CDS) from alignment at scaffold_15:365680..367394-

>mRNA_6333 ID=mRNA_6333|Name=jgi.p|Nanoce1779_2|649876|organism=Nannochloropsis oceanica|type=CDS|length=1320bp|location=Sequence derived from alignment at scaffold_15:365680..367394- (Nannochloropsis oceanica)
ATGCCTCCGACCTTCTCACCCCCCTGCCCACTCCAAGACATTGAGGACGC
CGCATCTACCTCCTCAGCCTCATTTGGCAGCGTGGCTATTCTGGACAGCT
GCACGGGCTGCATATCCTGCCGTGTCCTCGCTCCTGAAATTTTTCACGAG
GCCCGCAAGACTTCGTCAGACCCGACGGTGTTCACCGAGGTAGCACCAGG
GCGGCCGCTTCAATCGTTGGAGGAGGCACAGCAAGTCCGAGAGGCTATTA
TGTCCTGCCCCGTGCATGCCATCAAGTGGGTGAAGCGCCCTCGGGATTTA
AAAGTTCGTCCGCTGACTGAGGGCTACCCCAAGCCGGTCTCAGTGGAAAA
AAAAGAGAATGTATTCTTGGCGGGCGTCCCGAGTAAGAAGCTATTTGGGG
GCGCGTCGTTTTTGATATCGAGAGGGGGGAATGGGAAGGACCGAAATATG
TTGATTGATACGCCCGACTGTGACGAGGCATTGGTGGAGTATTTAAAGAA
AAGGGGTGGGTTGGACTACATAGTATTCACGCACAGAGATCACATCGCGT
GCCATCGCGAATGGAAACAGGCCTTCCCCGACGTGCAACGTGTGTTGCAC
GCCGACGATTTCACTGACGAAACCATCAAATTTGAAGTCAAGCTGCAAGG
CAGCGGTGGCAGTGGTGGCAGCAGCCGCAGCACTGCCCCCTTAGTCTGTT
CCTTGCCCGGGTGGGAGGAGGAAGTACAGTTGATTCACGGGCCCGGGCAC
ACACCTGGGTCTATTTTTGTCGTGTTTAAAAACAAATACCTATTCACGGG
TGACTCTCTTCATTATTCGCGCATTGAGGGGCATTTGGTCGGTTTCCGAC
TGCAATGCTGGGAGAGCTGGTCGAGGCAGCAGGCGTCGTGGGAGGCCCTT
CTCCGTCGGCCGGTCCCCTTCCTCCACGTCTTACCTGGCCATGGCGAACC
CCACCGATTCGCTTCTGTCGAAGAGGCACACGCGAGCTTGGAGGCATGCT
TAAAGTGGGCGAAGCAACTGCCGGATGGGTATACGCCAATGGGGAGATTT
CGGATGTGGGCGATAACGAGGACGACGAGTAAAAGGCGGTGGCTGCGGTG
GGTGGTTGACAACGTGGTGCTGCCCGCCGGGTCAAAAGTGGCGATTCCAT
TGTATCGGCTGGATGAGGGTGATAGGGATGGACGGAGAAAGGTTTTCGGG
GGAATGTCCTCGATGGTGGTTGCGGCCGTGTCGATGCTTGTCGGGGTGGG
GGTGGGATTGGTGGCTGCAGGGGCGGGAGGAGGAGGGGGAGGAAGGGGGG
GAAGATGGGGGGGAAGATGA
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Synonyms
Publications