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Properties
| Property Name | Value |
|---|
| TranscriptId | 594704 |
| Track | FilteredModels2 |
| ProteinId | 594618 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_15 | supercontig | scaffold_15:361734..363847 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6331 ID=mRNA_6331|Name=jgi.p|Nanoce1779_2|594618|organism=Nannochloropsis oceanica|type=mRNA|length=1928bp
AGGCAGAAAGTATACACTCCCCATCTTCGTCTTGTCCTTCACTGTTACCA
AAATTCAAATGGCGGCCGTCAGCAGGAACCTCGTTGTCGTGGCCTTGCTT
GCCGCAACGGGCCTAGTGCGGGCCGGCGAACGCAACCACAAGTATGCGGA
GGGGGACGAGGTAACACTGTGGGTGAATAAGGTAGGACCTTACCACAATC
CGCATGAGACATACGAGTACTACGATTTGCCATTTTGTAAGCCTGTGGGG
GGTGTCGAGACAAGGAGGAGAAGTAACAGTTTGGGGGAGCAGCTGGAGGG
GCATGAGCTCATGAATAGTGGGTATAAACTGAGTTTCGGCAAGGACGTGC
CAAGCACCAAGGTATGTTCGATGAAACTGGGAAAGGAGGACGCGAAGTCT
TTTGATAGGGCGGTGGAAAACCATTACTGGTATCAGCTTTATTTGGACGA
TCTTCCCATATGGGGGATGGTGGGGGAGATAGACGAGGAGACGGGAGCTA
AATCAATCTATACGCACCGCAAGCTTCATTTGGGTTTTAACGGACCCCAT
GTCATTGAGGTGAATATGACAAGTGAGAACTTGGTGCCGATCGCGGAGAA
TGGTAATCTTGATTTTACCTATGAGGTGGTGTGGACCCCCACGGAGACTT
TGTTTAAAAATCGGTTTGACCGATATTTGGACGTGGATTTTTTCGGGCAT
CAGATCCATTGGTTTTCGATCTTTAATTCGACGATGATGGTGGTGTTCTT
GTGTGGGTTGGTAAGTCTGATTTTGTTCCGGACCTTGCGGAATGACTTTG
CGAGGTACGCGAAGGAGGAAGGAGGAGTTGGGGGACATGGGCACATAGGG
GGGGAGATGGAGCCGCATGGGATGACTGAGGACTCGGGTTGGAAGCAGGT
GCACGGAGACGTTTTTCGCGCCCCCTTGCATTTGATGCTTTTTTCGGCGG
TGTACGGCGTGGGCTGGCAATTGTTGGTGTTGGTGTTCTTGGTGGTGGGA
TTCGCCATCGCCGGCCCCATCCACGGAGACGTGTACGAAAATCGGGGCGA
GCTCGCCACCACCTTCGTCGTGGTGTACGCTTTGACGTGTGCGGTGGCTG
GATACACAAGCGGGAGTTACTACAGGCAGTTTTTCCCCACCCCGCGGGCG
GAGCAGGCGAGCCAATGGCAGAAGACGATGTTGTTGACAGTTTTGCTGTT
TCCCACGCTGGTGGTGTCGGTTATATTTTGCTTGAACTTGATTGCTGAAT
ACTATGACACGACACATGCATTGCACCTGTCCACCATCTTTAAGATATTC
GCCATCTGGCTCTTCGTCTCCTTCCCCCTGACCGTGATGGGCACTGTGTT
CGGACGGCATTGGGCAGGGAAGGGTGACTTCCCCTGCCGCGTTAATAGTA
TGGCACGGCCCATTCCCTTGGGGCCTTGGTACACGCACCCGGGAGTGATC
ATCGCTGCAACGGGCATTCTGCCGTTTGGTTCGATTTTCATCGAGATGTA
TTTCATTTTCACGTCCTTCTGGAACTATAAGTTTTACTACGTGTATCATT
TCCTGGTGTTGGTGTACCTGATCCTGATGGTGGTGTGCGTTTGTACCACC
ATCGTGGCAGTGTACTTTACATTGAACGCCGAGAACTACCATTGGCAGTG
GTTGGCATTCATGGCGTCGGGAAGCACTGCCGGGTATGTTTTCTTGTACG
CCATTCACTATTTCATGTTCAAGACGAACATGACGGGCTTGTTGCAGACG
TCCTTTTATTTTGGGTACACCTTGGTCTTCTGCGTTGGCCTTTTTTTGTT
GTGCGGGAGTGTGGGTGTGGCGGGGAGCACGCTGTTTGTCCGGCAGATTT
ATTCGAATTTGAAAGTCGATTAAAGGCAGAGTCCGAGGAGGGAGAAAGGG
AGGGAGGGAGGGAAGGAGGAGGACTAGG back to topprotein sequence of jgi.p|Nanoce1779_2|594618 >mRNA_6331-protein ID=mRNA_6331-protein|Name=jgi.p|Nanoce1779_2|594618|organism=Nannochloropsis oceanica|type=polypeptide|length=605bp
MAAVSRNLVVVALLAATGLVRAGERNHKYAEGDEVTLWVNKVGPYHNPHE
TYEYYDLPFCKPVGGVETRRRSNSLGEQLEGHELMNSGYKLSFGKDVPST
KVCSMKLGKEDAKSFDRAVENHYWYQLYLDDLPIWGMVGEIDEETGAKSI
YTHRKLHLGFNGPHVIEVNMTSENLVPIAENGNLDFTYEVVWTPTETLFK
NRFDRYLDVDFFGHQIHWFSIFNSTMMVVFLCGLVSLILFRTLRNDFARY
AKEEGGVGGHGHIGGEMEPHGMTEDSGWKQVHGDVFRAPLHLMLFSAVYG
VGWQLLVLVFLVVGFAIAGPIHGDVYENRGELATTFVVVYALTCAVAGYT
SGSYYRQFFPTPRAEQASQWQKTMLLTVLLFPTLVVSVIFCLNLIAEYYD
TTHALHLSTIFKIFAIWLFVSFPLTVMGTVFGRHWAGKGDFPCRVNSMAR
PIPLGPWYTHPGVIIAATGILPFGSIFIEMYFIFTSFWNYKFYYVYHFLV
LVYLILMVVCVCTTIVAVYFTLNAENYHWQWLAFMASGSTAGYVFLYAIH
YFMFKTNMTGLLQTSFYFGYTLVFCVGLFLLCGSVGVAGSTLFVRQIYSN
LKVD* back to topmRNA from alignment at scaffold_15:361734..363847- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6331 ID=mRNA_6331|Name=jgi.p|Nanoce1779_2|594618|organism=Nannochloropsis oceanica|type=mRNA|length=2114bp|location=Sequence derived from alignment at scaffold_15:361734..363847- (Nannochloropsis oceanica)
AGGCAGAAAGTATACACTCCCCATCTTCGTCTTGTCCTTCACTGTTACCA
AAATTCAAATGGCGGCCGTCAGCAGGAACCTCGTTGTCGTGGCCTTGCTT
GCCGCAACGGGCCTAGTGCGGGCCGGCGAACGCAACCACAAGTATGCGGA
GGGGGACGAGGTAACACTGTGGGTGAATAAGGTAGGACCTTACCACAATC
CGCATGAGACATACGAGTACTACGATTTGCCATTTTGTAAGCCTGTGGGG
GGTGTCGAGACAAGGAGGAGAAGTAACAGTTTGGGGGAGCAGCTGGAGGG
GCATGAGCTCATGAATAGTGGGTATAAACTGAGTTTCGGCAAGGACGTGC
CAAGCACCAAGGTATGTTCGATGAAACTGGGAAAGGAGGACGCGAAGTCT
TTTGATAGGGCGGTGGAAAACCATTACTGGTATCAGCTTTATTTGGACGA
TCTTCCCATATGGGGGATGGTGGGGGAGATAGACGAGGAGACGGGAGCTA
AATCAATCTATACGCACCGCAAGCTTCATTTGGGTTTTAACGGACCCCAT
GTCATTGAGGTGAATATGACAAGTGAGAACTTGGTGCCGATCGCGGAGAA
TGGTAATCTTGATTTTACCTATGAGGTGGTGTGGACCCCCACGGAGACTT
TGTTTAAAAATCGGTTTGACCGATATTTGGACGTGGATTTTTTCGGGCAT
CAGATCCATTGGTTTTCGATCTTTAATTCGACGATGATGGTGGTGTTCTT
GTGTGGGTTGGTAAGTCTGATTTTGTTCCGGACCTTGCGGAATGACTTTG
CGAGGTACGCGAAGGAGGAAGGAGGAGTTGGGGGACATGGGCACATAGGG
GGGGAGATGGAGCCGCATGGGATGACTGAGGACTCGGGTTGGAAGCAGGT
GCACGGAGACGTTTTTCGCGCCCCCTTGCATTTGATGCTTTTTTCGGCGG
TGTACGGCGTGGGCTGGCAATTGTTGGTGTTGGTGTTCTTGGTGGTGGGA
TTCGCCATCGCCGGCCCCATCCACGGAGACGTGTACGAAAATCGGGGCGA
GCTCGCCACCACCTTCGTCGTGGTGTACGCTTTGACGTGTGCGGTGGCTG
GATACACAAGCGGGAGTTACTACAGGCAGTTTTTCCCCACCCCGCGGGCG
GAGCAGGCGAGCCAATGGCAGAAGACGATGTTGTTGACAGTTTTGCTGTT
TCCCACGCTGGTGGTGTCGGTTATATTTTGCTTGAACTTGATTGCTGAAT
ACTATGACACGACACATGCATTGCACCTGTCCACCATCTTTAAGGTACGC
CCTACCTCCTTCCTTCCTCCTTTCCTATCCTCCCCCCCTCCGTCTCTGTT
TCTCTTGGCATCGAGTGTCAAGGCACTTGTTCAATAAGCCCTCCTCCTAC
TCCCTCATGCCGCCGTTCACCTCTACAGCTTGCTTACCCCTCCCTCCTTT
CCTCCCTCCCTCCCTCCCTTCCTCCCTCAGATATTCGCCATCTGGCTCTT
CGTCTCCTTCCCCCTGACCGTGATGGGCACTGTGTTCGGACGGCATTGGG
CAGGGAAGGGTGACTTCCCCTGCCGCGTTAATAGTATGGCACGGCCCATT
CCCTTGGGGCCTTGGTACACGCACCCGGGAGTGATCATCGCTGCAACGGG
CATTCTGCCGTTTGGTTCGATTTTCATCGAGATGTATTTCATTTTCACGT
CCTTCTGGAACTATAAGTTTTACTACGTGTATCATTTCCTGGTGTTGGTG
TACCTGATCCTGATGGTGGTGTGCGTTTGTACCACCATCGTGGCAGTGTA
CTTTACATTGAACGCCGAGAACTACCATTGGCAGTGGTTGGCATTCATGG
CGTCGGGAAGCACTGCCGGGTATGTTTTCTTGTACGCCATTCACTATTTC
ATGTTCAAGACGAACATGACGGGCTTGTTGCAGACGTCCTTTTATTTTGG
GTACACCTTGGTCTTCTGCGTTGGCCTTTTTTTGTTGTGCGGGAGTGTGG
GTGTGGCGGGGAGCACGCTGTTTGTCCGGCAGATTTATTCGAATTTGAAA
GTCGATTAAAGGCAGAGTCCGAGGAGGGAGAAAGGGAGGGAGGGAGGGAA
GGAGGAGGACTAGG back to topCoding sequence (CDS) from alignment at scaffold_15:361734..363847- >mRNA_6331 ID=mRNA_6331|Name=jgi.p|Nanoce1779_2|594618|organism=Nannochloropsis oceanica|type=CDS|length=3630bp|location=Sequence derived from alignment at scaffold_15:361734..363847- (Nannochloropsis oceanica)
ATATTCGCCATCTGGCTCTTCGTCTCCTTCCCCCTGACCGTGATGGGCAC
TGTGTTCGGACGGCATTGGGCAGGGAAGGGTGACTTCCCCTGCCGCGTTA
ATAGTATGGCACGGCCCATTCCCTTGGGGCCTTGGTACACGCACCCGGGA
GTGATCATCGCTGCAACGGGCATTCTGCCGTTTGGTTCGATTTTCATCGA
GATGTATTTCATTTTCACGTCCTTCTGGAACTATAAGTTTTACTACGTGT
ATCATTTCCTGGTGTTGGTGTACCTGATCCTGATGGTGGTGTGCGTTTGT
ACCACCATCGTGGCAGTGTACTTTACATTGAACGCCGAGAACTACCATTG
GCAGTGGTTGGCATTCATGGCGTCGGGAAGCACTGCCGGGTATGTTTTCT
TGTACGCCATTCACTATTTCATGTTCAAGACGAACATGACGGGCTTGTTG
CAGACGTCCTTTTATTTTGGGTACACCTTGGTCTTCTGCGTTGGCCTTTT
TTTGTTGTGCGGGAGTGTGGGTGTGGCGGGGAGCACGCTGTTTGTCCGGC
AGATTTATTCGAATTTGAAAGTCGATTAAATGGCGGCCGTCAGCAGGAAC
CTCGTTGTCGTGGCCTTGCTTGCCGCAACGGGCCTAGTGCGGGCCGGCGA
ACGCAACCACAAGTATGCGGAGGGGGACGAGGTAACACTGTGGGTGAATA
AGGTAGGACCTTACCACAATCCGCATGAGACATACGAGTACTACGATTTG
CCATTTTGTAAGCCTGTGGGGGGTGTCGAGACAAGGAGGAGAAGTAACAG
TTTGGGGGAGCAGCTGGAGGGGCATGAGCTCATGAATAGTGGGTATAAAC
TGAGTTTCGGCAAGGACGTGCCAAGCACCAAGGTATGTTCGATGAAACTG
GGAAAGGAGGACGCGAAGTCTTTTGATAGGGCGGTGGAAAACCATTACTG
GTATCAGCTTTATTTGGACGATCTTCCCATATGGGGGATGGTGGGGGAGA
TAGACGAGGAGACGGGAGCTAAATCAATCTATACGCACCGCAAGCTTCAT
TTGGGTTTTAACGGACCCCATGTCATTGAGGTGAATATGACAAGTGAGAA
CTTGGTGCCGATCGCGGAGAATGGTAATCTTGATTTTACCTATGAGGTGG
TGTGGACCCCCACGGAGACTTTGTTTAAAAATCGGTTTGACCGATATTTG
GACGTGGATTTTTTCGGGCATCAGATCCATTGGTTTTCGATCTTTAATTC
GACGATGATGGTGGTGTTCTTGTGTGGGTTGGTAAGTCTGATTTTGTTCC
GGACCTTGCGGAATGACTTTGCGAGGTACGCGAAGGAGGAAGGAGGAGTT
GGGGGACATGGGCACATAGGGGGGGAGATGGAGCCGCATGGGATGACTGA
GGACTCGGGTTGGAAGCAGGTGCACGGAGACGTTTTTCGCGCCCCCTTGC
ATTTGATGCTTTTTTCGGCGGTGTACGGCGTGGGCTGGCAATTGTTGGTG
TTGGTGTTCTTGGTGGTGGGATTCGCCATCGCCGGCCCCATCCACGGAGA
CGTGTACGAAAATCGGGGCGAGCTCGCCACCACCTTCGTCGTGGTGTACG
CTTTGACGTGTGCGGTGGCTGGATACACAAGCGGGAGTTACTACAGGCAG
TTTTTCCCCACCCCGCGGGCGGAGCAGGCGAGCCAATGGCAGAAGACGAT
GTTGTTGACAGTTTTGCTGTTTCCCACGCTGGTGGTGTCGGTTATATTTT
GCTTGAACTTGATTGCTGAATACTATGACACGACACATGCATTGCACCTG
TCCACCATCTTTAAGATATTCGCCATCTGGCTCTTCGTCTCCTTCCCCCT
GACCGTGATGGGCACTGTGTTCGGACGGCATTGGGCAGGGAAGGGTGACT
TCCCCTGCCGCGTTAATAGTATGGCACGGCCCATTCCCTTGGGGCCTTGG
TACACGCACCCGGGAGTGATCATCGCTGCAACGGGCATTCTGCCGTTTGG
TTCGATTTTCATCGAGATGTATTTCATTTTCACGTCCTTCTGGAACTATA
AGTTTTACTACGTGTATCATTTCCTGGTGTTGGTGTACCTGATCCTGATG
GTGGTGTGCGTTTGTACCACCATCGTGGCAGTGTACTTTACATTGAACGC
CGAGAACTACCATTGGCAGTGGTTGGCATTCATGGCGTCGGGAAGCACTG
CCGGGTATGTTTTCTTGTACGCCATTCACTATTTCATGTTCAAGACGAAC
ATGACGGGCTTGTTGCAGACGTCCTTTTATTTTGGGTACACCTTGGTCTT
CTGCGTTGGCCTTTTTTTGTTGTGCGGGAGTGTGGGTGTGGCGGGGAGCA
CGCTGTTTGTCCGGCAGATTTATTCGAATTTGAAAGTCGATTAAATGGCG
GCCGTCAGCAGGAACCTCGTTGTCGTGGCCTTGCTTGCCGCAACGGGCCT
AGTGCGGGCCGGCGAACGCAACCACAAGTATGCGGAGGGGGACGAGGTAA
CACTGTGGGTGAATAAGGTAGGACCTTACCACAATCCGCATGAGACATAC
GAGTACTACGATTTGCCATTTTGTAAGCCTGTGGGGGGTGTCGAGACAAG
GAGGAGAAGTAACAGTTTGGGGGAGCAGCTGGAGGGGCATGAGCTCATGA
ATAGTGGGTATAAACTGAGTTTCGGCAAGGACGTGCCAAGCACCAAGGTA
TGTTCGATGAAACTGGGAAAGGAGGACGCGAAGTCTTTTGATAGGGCGGT
GGAAAACCATTACTGGTATCAGCTTTATTTGGACGATCTTCCCATATGGG
GGATGGTGGGGGAGATAGACGAGGAGACGGGAGCTAAATCAATCTATACG
CACCGCAAGCTTCATTTGGGTTTTAACGGACCCCATGTCATTGAGGTGAA
TATGACAAGTGAGAACTTGGTGCCGATCGCGGAGAATGGTAATCTTGATT
TTACCTATGAGGTGGTGTGGACCCCCACGGAGACTTTGTTTAAAAATCGG
TTTGACCGATATTTGGACGTGGATTTTTTCGGGCATCAGATCCATTGGTT
TTCGATCTTTAATTCGACGATGATGGTGGTGTTCTTGTGTGGGTTGGTAA
GTCTGATTTTGTTCCGGACCTTGCGGAATGACTTTGCGAGGTACGCGAAG
GAGGAAGGAGGAGTTGGGGGACATGGGCACATAGGGGGGGAGATGGAGCC
GCATGGGATGACTGAGGACTCGGGTTGGAAGCAGGTGCACGGAGACGTTT
TTCGCGCCCCCTTGCATTTGATGCTTTTTTCGGCGGTGTACGGCGTGGGC
TGGCAATTGTTGGTGTTGGTGTTCTTGGTGGTGGGATTCGCCATCGCCGG
CCCCATCCACGGAGACGTGTACGAAAATCGGGGCGAGCTCGCCACCACCT
TCGTCGTGGTGTACGCTTTGACGTGTGCGGTGGCTGGATACACAAGCGGG
AGTTACTACAGGCAGTTTTTCCCCACCCCGCGGGCGGAGCAGGCGAGCCA
ATGGCAGAAGACGATGTTGTTGACAGTTTTGCTGTTTCCCACGCTGGTGG
TGTCGGTTATATTTTGCTTGAACTTGATTGCTGAATACTATGACACGACA
CATGCATTGCACCTGTCCACCATCTTTAAG back to top
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