jgi.p|Nanoce1779_2|594615, mRNA_6330 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594615
Unique NamemRNA_6330
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length730
Alignment locationscaffold_15:360203..361139 +

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Properties
Property NameValue
TranscriptId594701
TrackFilteredModels2
ProteinId594615
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:360203..361139 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594615gene_6330Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594615mRNA_6330-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6330CDS_6330Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6330 ID=mRNA_6330|Name=jgi.p|Nanoce1779_2|594615|organism=Nannochloropsis oceanica|type=mRNA|length=730bp
CAGACTACGCAAGCAACCTTAGCACCACCGACAGGCAGCATGAGCAGCTT
TTTTGGGGGCGGAGGTGGCAGTCAGCCTCCTTCGGCGAGCAATCAGCAGC
TAAAGATGGCCAAGGCCGAGGTCAAGATGTACTCGGACCTATTCAACAAG
ATGTGCTCCCTCTGCTTCGAAAAATGCGTATCTCGATACAACGACACAGA
TCTTAACCTAGGTGAGATGTCATGCGTGGACCGATGCGTGGGGAAGTACC
TAGAGTCACACATGAAGGTGGGGGAGGTCCTGAAGAACTTCGAGGAGACT
GCCAAACAACAACAGCAAGCGCAGGGAGTAATGCCACCTTCCGGTTGAAA
AAATCGATGAAGCGCAAAAGCAGGAGCGGCAATGGGAGCAAGGAGAAAGA
GGAGTAGGATCTGGGGTTGTACATGTAGGGAAGTGGGGAGGAAGAGAGGA
CTTGCGGGTGGTAGGGAAGGGTGTAGACACACAATCAGTCGAGTTGAGAG
CGAGAGTGAGGAATGAGAAGCGGCACTGTGTGTGTGCGAAAGAGAGAGAG
CTAGTGTAGGAGGGAATGGTAATAATAAGGGTAAATGAGAAGGTATGGAA
GCAGGATTTCCCCCCTCCTTTGAGTACGAGAGCAAAGAAGGCTCTTGGAA
GGAGCAGCAGGCAATAGGAGCAGAAGCAGAAGCAGCAGTGATTTCCACCA
ACAAAGAAAGTAGTCACACACTCTCGAAAA
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protein sequence of jgi.p|Nanoce1779_2|594615

>mRNA_6330-protein ID=mRNA_6330-protein|Name=jgi.p|Nanoce1779_2|594615|organism=Nannochloropsis oceanica|type=polypeptide|length=103bp
MSSFFGGGGGSQPPSASNQQLKMAKAEVKMYSDLFNKMCSLCFEKCVSRY
NDTDLNLGEMSCVDRCVGKYLESHMKVGEVLKNFEETAKQQQQAQGVMPP
SG*
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mRNA from alignment at scaffold_15:360203..361139+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6330 ID=mRNA_6330|Name=jgi.p|Nanoce1779_2|594615|organism=Nannochloropsis oceanica|type=mRNA|length=937bp|location=Sequence derived from alignment at scaffold_15:360203..361139+ (Nannochloropsis oceanica)
CAGACTACGCAAGCAACCTTAGCACCACCGACAGGCAGCATGAGCAGCTT
TTTTGGGGGCGGAGGTGGCAGTCAGCCTCCTTCGGCGAGCAATCAGCAGC
TAAAGATGGCCAAGGCCGAGGTCAAGATGTACTCGGACCTATTCAACAAG
TAAGAAGGCCCGTGTGTGTTGCTGTGCTTTGCGGGCGTGCATTCTCCCTT
CCCGGCCGCGGCTCTCTTTTATTTACTTCTATCCATCTTTTTAATTCTCA
CTGTCCATCATGTCTATAACGCGCTCGTCCCTCTGAACAGCAGCGTGGAC
GCAGTCCCTAACCCCTCTCCCTCTCTTCCTTTCCTGCCTGCCCTCCATCC
CAACAGGATGTGCTCCCTCTGCTTCGAAAAATGCGTATCTCGATACAACG
ACACAGATCTTAACCTAGGTGAGATGTCATGCGTGGACCGATGCGTGGGG
AAGTACCTAGAGTCACACATGAAGGTGGGGGAGGTCCTGAAGAACTTCGA
GGAGACTGCCAAACAACAACAGCAAGCGCAGGGAGTAATGCCACCTTCCG
GTTGAAAAAATCGATGAAGCGCAAAAGCAGGAGCGGCAATGGGAGCAAGG
AGAAAGAGGAGTAGGATCTGGGGTTGTACATGTAGGGAAGTGGGGAGGAA
GAGAGGACTTGCGGGTGGTAGGGAAGGGTGTAGACACACAATCAGTCGAG
TTGAGAGCGAGAGTGAGGAATGAGAAGCGGCACTGTGTGTGTGCGAAAGA
GAGAGAGCTAGTGTAGGAGGGAATGGTAATAATAAGGGTAAATGAGAAGG
TATGGAAGCAGGATTTCCCCCCTCCTTTGAGTACGAGAGCAAAGAAGGCT
CTTGGAAGGAGCAGCAGGCAATAGGAGCAGAAGCAGAAGCAGCAGTGATT
TCCACCAACAAAGAAAGTAGTCACACACTCTCGAAAA
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Coding sequence (CDS) from alignment at scaffold_15:360203..361139+

>mRNA_6330 ID=mRNA_6330|Name=jgi.p|Nanoce1779_2|594615|organism=Nannochloropsis oceanica|type=CDS|length=618bp|location=Sequence derived from alignment at scaffold_15:360203..361139+ (Nannochloropsis oceanica)
ATGAGCAGCTTTTTTGGGGGCGGAGGTGGCAGTCAGCCTCCTTCGGCGAG
CAATCAGCAGCTAAAGATGGCCAAGGCCGAGGTCAAGATGTACTCGGACC
TATTCAACAAGATGTGCTCCCTCTGCTTCGAAAAATGCGTATCTCGATAC
AACGACACAGATCTTAACCTAGGTGAGATGTCATGCGTGGACCGATGCGT
GGGGAAGTACCTAGAGTCACACATGAAGGTGGGGGAGGTCCTGAAGAACT
TCGAGGAGACTGCCAAACAACAACAGCAAGCGCAGGGAGTAATGCCACCT
TCCGGTTGAATGAGCAGCTTTTTTGGGGGCGGAGGTGGCAGTCAGCCTCC
TTCGGCGAGCAATCAGCAGCTAAAGATGGCCAAGGCCGAGGTCAAGATGT
ACTCGGACCTATTCAACAAGATGTGCTCCCTCTGCTTCGAAAAATGCGTA
TCTCGATACAACGACACAGATCTTAACCTAGGTGAGATGTCATGCGTGGA
CCGATGCGTGGGGAAGTACCTAGAGTCACACATGAAGGTGGGGGAGGTCC
TGAAGAACTTCGAGGAGACTGCCAAACAACAACAGCAAGCGCAGGGAGTA
ATGCCACCTTCCGGTTGA
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Synonyms
Publications