jgi.p|Nanoce1779_2|138527, mRNA_633 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|138527
Unique NamemRNA_633
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1150
Alignment locationscaffold_2:54147..55745 -

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Properties
Property NameValue
TranscriptId138613
TrackFilteredModels2
ProteinId138527
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:54147..55745 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|138527gene_633Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|138527mRNA_633-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_633CDS_633Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_633 ID=mRNA_633|Name=jgi.p|Nanoce1779_2|138527|organism=Nannochloropsis oceanica|type=mRNA|length=1150bp
GAGAATAAAGCGGGGTTGCGACCGCCATACCCGTTATTGTCCACAGAGAA
CAGCTTCCCCCCCCCCTTCTCCATTATCTTTTCTCTGGCCGCGGCTGCTG
TCACCCCTCGCCCACGTACTCACTCCCTTTTTCCTCCCTCCCCCCCTCCT
TCCTTCCCTCCCTCCCTCCCTCTCTCACTCCCACCCACCACGGCAAGCAA
GGCCCACTTATCCAAAGGATGGACTTCTGCTACCCCCTTCCCCGCTGGTC
ATTTATCGTCCACACTGCCTGCACCACGGTCTCTCTCCTCCTCCTCCCGC
CCGCCATCCACTATGCAGCCCGGATCGAAAGCCGATTCATTCTCATGACC
CCTACACTGTGCCTGGCCTTGGCCTATGAGAACCTCCTCCTTGTCTTGCC
CAACGAACCATATTGCAGCCTGGGCGCGCAACGCGTAGGTTGGATAATGA
ATGCCATCATCCCCCCCCTCTTCCTCGTCGCCTCCTTCGAGACCGGCTAT
GTGGTGCACAAACACCGTTCCGTCAAGTACCTCGGCATCAACTTCGACGA
AGGGAAGCGCGTTGATACGTCCCCCTGCTCGTGGTTCCTCCGCAACTTGA
CCCGTCTAATCTCCCTCGCCCTGCTCTTCATGGGCCTCGCTGTCAACTTC
TCCCTCTTCTTTCCCCACTCCTCCGAAAACGCCGGTATGGAAAGCACTCC
ACCCTCCTCATCCCCCGCTCCTGCGGCTGGAGTTGGATGCTCCTCGGCTC
GGTGCTGCAAACCGCAGGGCAGTTTCCCGCCTCTTCTGCCTTTTACCCCT
CCACGTCCATGGCAGGGTACACGGCATTCCTCGTCTGCGTCGTCTGCACG
CACCGGCTGGTGCTCAAGGACATGGGCGAGGCGGAGAGAATAACGGAATT
TTTGCGGCGACAAAAGGCCGTGCAGCAGCAGCTGGCCGCCACCTGCGTGC
TGAGGGAGGGAATGAGGGCGAGGAGGAGGAAGGACGCGGCGGTCGAGGCG
CGGGGGGAGGGAGGGGAGGAGGAGGGAGGAGCGGGGAGGGGTGTGGTTGT
AAATGGATACGGGGGAAGGAGGAGGACGTCTGGTCAATGCCACCACCACC
ACCACCACCACCACCAGCAGCAGCAGCAGCAGCAGAGGAGGAGGAGGAGG
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protein sequence of jgi.p|Nanoce1779_2|138527

>mRNA_633-protein ID=mRNA_633-protein|Name=jgi.p|Nanoce1779_2|138527|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MDFCYPLPRWSFIVHTACTTVSLLLLPPAIHYAARIESRFILMTPTLCLA
LAYENLLLVLPNEPYCSLGAQRVGWIMNAIIPPLFLVASFETGYVVHKHR
SVKYLGINFDEGKRVDTSPCSWFLRNLTRLISLALLFMGLAVNFSLFFPH
SSENAGMESTPPSSSPAPAAGVGCSSARCCKPQGSFPPLLPFTPPRPWQG
TRHSSSASSARTGWCSRTWARRRE*
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mRNA from alignment at scaffold_2:54147..55745-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_633 ID=mRNA_633|Name=jgi.p|Nanoce1779_2|138527|organism=Nannochloropsis oceanica|type=mRNA|length=1599bp|location=Sequence derived from alignment at scaffold_2:54147..55745- (Nannochloropsis oceanica)
GAGAATAAAGCGGGGTTGCGACCGCCATACCCGTTATTGTCCACAGAGAA
CAGCTTCCCCCCCCCCTTCTCCATTATCTTTTCTCTGGCCGCGGCTGCTG
TCACCCCTCGCCCACGTACTCACTCCCTTTTTCCTCCCTCCCCCCCTCCT
TCCTTCCCTCCCTCCCTCCCTCTCTCACTCCCACCCACCACGGCAAGCAA
GGCCCACTTATCCAAAGGATGGACTTCTGCTACCCCCTTCCCCGCTGGTC
ATTTATCGTCCACACTGCCTGCACCACGGTCTCTCTCCTCCTCCTCCCGC
CCGCCATCCACTATGCAGCCCGGATCGAAAGCCGATTCATTCTCATGACC
CCTACACTGTGCCTGGCCTTGGCCTATGAGAACCTCCTCCTTGTCTTGCC
CAACGAACCATATTGCAGCCTGGGCGCGCAACGCGTAGGTTGGATAATGA
ATGGTAGGTGATACATCGTTTGGAAGGGTACCTCACCTCTGAGGGTAAAT
AAACCTCCCCCCCTCTTCCCTTCCCCCCCCCAGGGCCCTGCCCTCCTTCC
CCCCTTCCCCCCTTCCATCCTTCGAGATAGTTCACGAACAAAAAACTAAT
CGTCTCCTCCCCCCCCCCTTCCCCTTCCTGCTCCCCTCCCTTTCCCTCGT
CCCCCCCCATACATGCACTCCATTCAGCCATCATCCCCCCCCTCTTCCTC
GTCGCCTCCTTCGAGACCGGCTATGTGGTGCACAAACACCGTTCCGTCAA
GTACCTCGGCATCAACTTCGACGAAGGGAAGCGCGTTGATACGTCCCCCT
GCTCGTGGTTCCTCCGCAACTTGACCCGTCTAATCTCCCTCGCCCTGCTC
TTCATGGGCCTCGCTGTCAACTTCTCCCTCTTCTTTCCCCACTCCTCCGA
AAACGCCGGTATGTCCGGGTACCTTGGCCTGGGGCGCGTCGACCATGCGC
ATTACTACATCTCCCTCGTTCCCTCCCTCGTCTTCTCCCTCGTGTCCCTC
ATCATCGCCGCCACCATCCGAAGGTATGGAAAGCACTCCACCCTCCTCAT
CCCCCGCTCCTGCGGCTGGAGTTGGATGCTCCTCGGCTCGGTGCTGCAAA
CCGCAGGGCAGTTTCCCGCCTCTTCTGCCTTTTACCCCTCCACGTCCATG
GCAGGGTACACGGCATTCCTCGTCTGCGTCGTCTGCACGCACCGGCTGGT
GCTCAAGGACATGGGCGAGGCGGAGAGAATAACGGAATTTTTGCGGCGAC
AAAAGGCCGTGCAGCAGCAGCTGGCCGCCACCTGCGTGCTGAGGGAGGGA
ATGAGGGCGAGGAGGAGGAAGGACGCGGCGGTCGAGGCGCGGGGGGAGGG
AGGGGAGGAGGAGGGAGGAGCGGGGAGGGGTGTGGTTGTAAATGGATACG
GGGGAAGGAGGAGGACGTCTGGTCAATGCCACCACCACCACCACCACCAC
CACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGCAGCAGCAGCAGCA
TAACGAACAGCATCAGGAACAGCAGGAACAGCATATGAAGGACGCAGATG
GGGTAGAAGAAGGGGAAGGAGGAGGAGGGGGAGGAGGAGGAGGAGGAGG
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Coding sequence (CDS) from alignment at scaffold_2:54147..55745-

>mRNA_633 ID=mRNA_633|Name=jgi.p|Nanoce1779_2|138527|organism=Nannochloropsis oceanica|type=CDS|length=2025bp|location=Sequence derived from alignment at scaffold_2:54147..55745- (Nannochloropsis oceanica)
GTATGGAAAGCACTCCACCCTCCTCATCCCCCGCTCCTGCGGCTGGAGTT
GGATGCTCCTCGGCTCGGTGCTGCAAACCGCAGGGCAGTTTCCCGCCTCT
TCTGCCTTTTACCCCTCCACGTCCATGGCAGGGTACACGGCATTCCTCGT
CTGCGTCGTCTGCACGCACCGGCTGGTGCTCAAGGACATGGGCGAGGCGG
AGAGAATAACCATCATCCCCCCCCTCTTCCTCGTCGCCTCCTTCGAGACC
GGCTATGTGGTGCACAAACACCGTTCCGTCAAGTACCTCGGCATCAACTT
CGACGAAGGGAAGCGCGTTGATACGTCCCCCTGCTCGTGGTTCCTCCGCA
ACTTGACCCGTCTAATCTCCCTCGCCCTGCTCTTCATGGGCCTCGCTGTC
AACTTCTCCCTCTTCTTTCCCCACTCCTCCGAAAACGCCGATGGACTTCT
GCTACCCCCTTCCCCGCTGGTCATTTATCGTCCACACTGCCTGCACCACG
GTCTCTCTCCTCCTCCTCCCGCCCGCCATCCACTATGCAGCCCGGATCGA
AAGCCGATTCATTCTCATGACCCCTACACTGTGCCTGGCCTTGGCCTATG
AGAACCTCCTCCTTGTCTTGCCCAACGAACCATATTGCAGCCTGGGCGCG
CAACGCGTAGGTTGGATAATGAATGGTATGGAAAGCACTCCACCCTCCTC
ATCCCCCGCTCCTGCGGCTGGAGTTGGATGCTCCTCGGCTCGGTGCTGCA
AACCGCAGGGCAGTTTCCCGCCTCTTCTGCCTTTTACCCCTCCACGTCCA
TGGCAGGGTACACGGCATTCCTCGTCTGCGTCGTCTGCACGCACCGGCTG
GTGCTCAAGGACATGGGCGAGGCGGAGAGAATAACCATCATCCCCCCCCT
CTTCCTCGTCGCCTCCTTCGAGACCGGCTATGTGGTGCACAAACACCGTT
CCGTCAAGTACCTCGGCATCAACTTCGACGAAGGGAAGCGCGTTGATACG
TCCCCCTGCTCGTGGTTCCTCCGCAACTTGACCCGTCTAATCTCCCTCGC
CCTGCTCTTCATGGGCCTCGCTGTCAACTTCTCCCTCTTCTTTCCCCACT
CCTCCGAAAACGCCGATGGACTTCTGCTACCCCCTTCCCCGCTGGTCATT
TATCGTCCACACTGCCTGCACCACGGTCTCTCTCCTCCTCCTCCCGCCCG
CCATCCACTATGCAGCCCGGATCGAAAGCCGATTCATTCTCATGACCCCT
ACACTGTGCCTGGCCTTGGCCTATGAGAACCTCCTCCTTGTCTTGCCCAA
CGAACCATATTGCAGCCTGGGCGCGCAACGCGTAGGTTGGATAATGAATG
GTATGGAAAGCACTCCACCCTCCTCATCCCCCGCTCCTGCGGCTGGAGTT
GGATGCTCCTCGGCTCGGTGCTGCAAACCGCAGGGCAGTTTCCCGCCTCT
TCTGCCTTTTACCCCTCCACGTCCATGGCAGGGTACACGGCATTCCTCGT
CTGCGTCGTCTGCACGCACCGGCTGGTGCTCAAGGACATGGGCGAGGCGG
AGAGAATAACCATCATCCCCCCCCTCTTCCTCGTCGCCTCCTTCGAGACC
GGCTATGTGGTGCACAAACACCGTTCCGTCAAGTACCTCGGCATCAACTT
CGACGAAGGGAAGCGCGTTGATACGTCCCCCTGCTCGTGGTTCCTCCGCA
ACTTGACCCGTCTAATCTCCCTCGCCCTGCTCTTCATGGGCCTCGCTGTC
AACTTCTCCCTCTTCTTTCCCCACTCCTCCGAAAACGCCGATGGACTTCT
GCTACCCCCTTCCCCGCTGGTCATTTATCGTCCACACTGCCTGCACCACG
GTCTCTCTCCTCCTCCTCCCGCCCGCCATCCACTATGCAGCCCGGATCGA
AAGCCGATTCATTCTCATGACCCCTACACTGTGCCTGGCCTTGGCCTATG
AGAACCTCCTCCTTGTCTTGCCCAACGAACCATATTGCAGCCTGGGCGCG
CAACGCGTAGGTTGGATAATGAATG
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Synonyms
Publications