jgi.p|Nanoce1779_2|594609, mRNA_6328 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594609
Unique NamemRNA_6328
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1139
Alignment locationscaffold_15:357717..358855 +

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Properties
Property NameValue
TranscriptId594695
TrackFilteredModels2
ProteinId594609
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:357717..358855 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594609gene_6328Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594609mRNA_6328-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6328CDS_6328Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6328 ID=mRNA_6328|Name=jgi.p|Nanoce1779_2|594609|organism=Nannochloropsis oceanica|type=mRNA|length=1139bp
GTGGTTGCGGCGGATACCCCGGTAGAGGGAGGACAGGAGGCAGCGGCAGA
AGCGGCAAAAGCAGCAGCAGCAGCAGCAGTCGCAAAGGAGGGGGAGGACT
CCTTCCATGACACCGTCGAGGAGGCAGCCGAGAGCGACAACGCAGCCCCC
ACGGCAGCGGCAGCGACCAAAAACGAGGAAGAGGATGATGATGATGCAGA
AAAGGCGGAAGTTGCAGAGCTTGCTGCCCTCGCTTCGGTAACAGAGGCAA
TATCGGGACCGGAAGCAGTGCGGAGGAAGAGGGCAGAAACGGGGGATAAC
CTCAAAAAGGACAAGTACAACGCTAAAATGCAATGGGTCATCACAAATAA
AATGAAAAAGATTTTAGCGGAGGAGTTGCATTACGAGATGGAAGAGGTGG
AGGCGATGATGCCTGATGTGGCTGCTGTCGTAATTAATAAGCACTTGGAA
AGGCCTAAGCGGGGGATGCCGCCTGAATGGCGGAGGGACTTCCATCTACG
ACAAAGGGGTTGGAAGAGGGCACAAGCATCTTTAAAGCACGCCTTGCGAC
GGGTCATGGAGGAGCCCCAGTCATTGATCCGAGGGGTGGGAACAGCAGCA
GTAGCGATATTGGGGGCGGGGTTGGCGAAACGATGGGTGGAGGGGCGAAT
GGAGGGAGGAGGGGGTGAGGAGGATGAGTGGGAGTGGGTCGAGATGACAC
CGTGGGAGGAGATGGTCGATAGGATTCAAAGTCTGTTGCCGGGGCGAGGA
GGAGGGAAGATGTAGGGAGGAGGGAGGAAGGGAAGGTTTATGTAAGAGGA
AGGGAGGATAAGTGCGTGTGTGGGGTACTAAAAGAAGGGAAGGTGGTAAC
ACGAAGAAGCGGCGGTGGAGAGAGGAAGAAAGTGAGAGAGGAGAAATGGA
CTGAAGGCCTGTAGAGTTGTCATCGTCAAGTCGTGTCTGACAAGCAGAGA
AAAGGAGAAGGAGGGAGGGACTGAGGGGAGGGAAGGAGGTCGGTCTTACT
TGACAAACGTGAAGAGGTGGGGAGGAGAGAAATAAAAGTGAGAAGCGGAA
AATGCAAGAACAGCTTTAAAAAAACACGGAAAACCAAAGAAAAGAATGAT
GAAAGAGGAAACGAAGACGAATCAGACGAACCAAGAAAC
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protein sequence of jgi.p|Nanoce1779_2|594609

>mRNA_6328-protein ID=mRNA_6328-protein|Name=jgi.p|Nanoce1779_2|594609|organism=Nannochloropsis oceanica|type=polypeptide|length=146bp
MQWVITNKMKKILAEELHYEMEEVEAMMPDVAAVVINKHLERPKRGMPPE
WRRDFHLRQRGWKRAQASLKHALRRVMEEPQSLIRGVGTAAVAILGAGLA
KRWVEGRMEGGGGEEDEWEWVEMTPWEEMVDRIQSLLPGRGGGKM*
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mRNA from alignment at scaffold_15:357717..358855+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6328 ID=mRNA_6328|Name=jgi.p|Nanoce1779_2|594609|organism=Nannochloropsis oceanica|type=mRNA|length=1139bp|location=Sequence derived from alignment at scaffold_15:357717..358855+ (Nannochloropsis oceanica)
GTGGTTGCGGCGGATACCCCGGTAGAGGGAGGACAGGAGGCAGCGGCAGA
AGCGGCAAAAGCAGCAGCAGCAGCAGCAGTCGCAAAGGAGGGGGAGGACT
CCTTCCATGACACCGTCGAGGAGGCAGCCGAGAGCGACAACGCAGCCCCC
ACGGCAGCGGCAGCGACCAAAAACGAGGAAGAGGATGATGATGATGCAGA
AAAGGCGGAAGTTGCAGAGCTTGCTGCCCTCGCTTCGGTAACAGAGGCAA
TATCGGGACCGGAAGCAGTGCGGAGGAAGAGGGCAGAAACGGGGGATAAC
CTCAAAAAGGACAAGTACAACGCTAAAATGCAATGGGTCATCACAAATAA
AATGAAAAAGATTTTAGCGGAGGAGTTGCATTACGAGATGGAAGAGGTGG
AGGCGATGATGCCTGATGTGGCTGCTGTCGTAATTAATAAGCACTTGGAA
AGGCCTAAGCGGGGGATGCCGCCTGAATGGCGGAGGGACTTCCATCTACG
ACAAAGGGGTTGGAAGAGGGCACAAGCATCTTTAAAGCACGCCTTGCGAC
GGGTCATGGAGGAGCCCCAGTCATTGATCCGAGGGGTGGGAACAGCAGCA
GTAGCGATATTGGGGGCGGGGTTGGCGAAACGATGGGTGGAGGGGCGAAT
GGAGGGAGGAGGGGGTGAGGAGGATGAGTGGGAGTGGGTCGAGATGACAC
CGTGGGAGGAGATGGTCGATAGGATTCAAAGTCTGTTGCCGGGGCGAGGA
GGAGGGAAGATGTAGGGAGGAGGGAGGAAGGGAAGGTTTATGTAAGAGGA
AGGGAGGATAAGTGCGTGTGTGGGGTACTAAAAGAAGGGAAGGTGGTAAC
ACGAAGAAGCGGCGGTGGAGAGAGGAAGAAAGTGAGAGAGGAGAAATGGA
CTGAAGGCCTGTAGAGTTGTCATCGTCAAGTCGTGTCTGACAAGCAGAGA
AAAGGAGAAGGAGGGAGGGACTGAGGGGAGGGAAGGAGGTCGGTCTTACT
TGACAAACGTGAAGAGGTGGGGAGGAGAGAAATAAAAGTGAGAAGCGGAA
AATGCAAGAACAGCTTTAAAAAAACACGGAAAACCAAAGAAAAGAATGAT
GAAAGAGGAAACGAAGACGAATCAGACGAACCAAGAAAC
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Coding sequence (CDS) from alignment at scaffold_15:357717..358855+

>mRNA_6328 ID=mRNA_6328|Name=jgi.p|Nanoce1779_2|594609|organism=Nannochloropsis oceanica|type=CDS|length=438bp|location=Sequence derived from alignment at scaffold_15:357717..358855+ (Nannochloropsis oceanica)
ATGCAATGGGTCATCACAAATAAAATGAAAAAGATTTTAGCGGAGGAGTT
GCATTACGAGATGGAAGAGGTGGAGGCGATGATGCCTGATGTGGCTGCTG
TCGTAATTAATAAGCACTTGGAAAGGCCTAAGCGGGGGATGCCGCCTGAA
TGGCGGAGGGACTTCCATCTACGACAAAGGGGTTGGAAGAGGGCACAAGC
ATCTTTAAAGCACGCCTTGCGACGGGTCATGGAGGAGCCCCAGTCATTGA
TCCGAGGGGTGGGAACAGCAGCAGTAGCGATATTGGGGGCGGGGTTGGCG
AAACGATGGGTGGAGGGGCGAATGGAGGGAGGAGGGGGTGAGGAGGATGA
GTGGGAGTGGGTCGAGATGACACCGTGGGAGGAGATGGTCGATAGGATTC
AAAGTCTGTTGCCGGGGCGAGGAGGAGGGAAGATGTAG
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Synonyms
Publications