jgi.p|Nanoce1779_2|90113, mRNA_6327 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|90113
Unique Name	mRNA_6327
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1895
Alignment location	scaffold_15:355202..357096 -

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Properties


Property Name	Value
TranscriptId	90199
Track	FilteredModels2
ProteinId	90113

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:355202..357096 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|90113	gene_6327	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|90113	mRNA_6327-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6327	CDS_6327	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:355202..357096-
coding sequence from alignment at scaffold_15:355202..357096-

mRNA sequence

>mRNA_6327 ID=mRNA_6327|Name=jgi.p|Nanoce1779_2|90113|organism=Nannochloropsis oceanica|type=mRNA|length=1895bp
GTTTGGCTTTGCGCGCCCTAAACATTGACAAGAAAGCCGGCCTGTCCAAG
CATTCGAATTACAAACTAAATAGATAAGTATATGACCTAAAAATGGCGTT
GCTTTCTCTAAAAGCGTCCACACCGATAGCAAATATCACACGAACGCATG
CACCCACCTCTTCAATCAAGAGAGCCACACCTAAGCAAGGCCCTTGAGCT
CGCCCGACACAACGGTGTTTTGACTTTGAGCTACCACCACACGATTACCG
ATGCGCATGGACATAAACTACGCATATTCGACAACCCAGCAATAACATTA
TGAATCACTTCCCCAAGCACAGGGCTAGCCAGCGGAAATGGGACAAGGCA
TCTAAATTGCGCTCCAAAACCTCCCCACCCCACGATGCTCCGCACGACCT
TGGCCCGGGAAGAAGTGGCAGTCCGCAACGCCGTGGATAAGCTCTTGAGT
CGGCAGCTGCAACAACAGGAGGATGGTCAATTCATGAGCTACGACAAAGA
ACAGGCGCTCCAAGCTCTATTGCGAACGCCGCGCCGTCGCTTTCTCTTCT
TGGAAGCTGGTGGCGTGAAAGCATTGGTCGAGCTACTGAAAACACACGGT
TTCGACCGTCCTATACCTGTATCTGAGCTCCTGAGCATTATGCGTTTACT
AATCCTATGCTGTCAGGACACGGAGAGTGCCGTGGGAGTAGGGCTGTTCG
GCCTACATCCGTGGATAAAACGGGTGCTGGCCTCGGACAATGAAGAGGAA
GGCCAGGAGGATGACGAGGCAACGGAGGTCCTGCGAGAATATGCTGAGGA
GATCGCCAGCCGCTGCGCTCGCGTTCGTGGGGGTTTCCCCCTTCAAAGAT
TGGCATTATGCTCAGATTCGGCATTCTCGTCGTTACATTTGCCCGTACGT
GTGCCTATTTATTCTCACTTTCGCACCACCACCATCACCCACGCTCAAAA
CCATCAGCCAGGGAAAGAAAATGAAAGCAAGGATCTCATCGTTCTGATTT
CACCCATCGCCTATCGTATGAGCAGTCAAGCGGATACTGGTTATTTTCTA
TGGCCGGCTGCTACTATTCTCACTCGATTCATTTTGATAAATTCTTCTTT
TTTTGCTGGGAAGAGGGTGATGGAGATCGGAGCAGGGTTGGGGTTGTGTG
GTTTAGTTGCAGGGAGGGTTGCCAAAGAGGTGTTGCTGACTGATCATAAT
TTAGCATGTGTGCGGCAAATGCAGGAGCATGTGAGATTGAATCGTGATGA
TGGGATAGGGGGATGGGAGGAAGATCGAGTGACATCGAATGAAGGAGAGG
CAGCGGCAGAGGCAGGATCAGCGGGAGCAACTTTAGGAGCAACAGTAGCG
CTTGTGCATCCAAGCACAATGAAAGTGCGGTGGTTAGATTGGGATCGGCT
GGAGGCCGTGTCGAAATTCACGTGGCAAGTGTCGGAGAAGGCAGAAGAGA
AGGGGATACGAGGGGGGCGGGAAGAGGAGGAAGGAGCAAAGAGCGAGGTG
GACGAAGAGTATGATAGAAAGGAGAATGCTGATTATCACTGTGTTTCAGA
GGAGGAGATCGAAAGCTTTGGCCGGCCGCGATGGAGCAGTGGCTTGCTCG
ATGTGGTGATAGGGAGTGACTGTATTTGCGACGAGCCTAGCGCGGTGGGA
GTGGCCCGCCTCCTTAGCTTGACCTTGAAGCCGGGCACTGGAGTGGGGTA
TATCACTGCTCCTGCCCCCCAGCATAGGTAAGATATATGATTTGTTCTTA
GAAATGGGATAGAAAAGATTAATTAATTTCTTAATTAAATGAATCAATAA
ATAAGATAAAATAAAAGGATGATGAATGAAAGAGAGGAAGACAGGGATGA
ATTAATGAATTAGAATAGATGAATAGGTCAATGAATGAATGCATG

protein sequence of jgi.p|Nanoce1779_2|90113

>mRNA_6327-protein ID=mRNA_6327-protein|Name=jgi.p|Nanoce1779_2|90113|organism=Nannochloropsis oceanica|type=polypeptide|length=449bp
MLRTTLAREEVAVRNAVDKLLSRQLQQQEDGQFMSYDKEQALQALLRTPR
RRFLFLEAGGVKALVELLKTHGFDRPIPVSELLSIMRLLILCCQDTESAV
GVGLFGLHPWIKRVLASDNEEEGQEDDEATEVLREYAEEIASRCARVRGG
FPLQRLALCSDSAFSSLHLPVRVPIYSHFRTTTITHAQNHQPGKENESKD
LIVLISPIAYRMSSQADTGYFLWPAATILTRFILINSSFFAGKRVMEIGA
GLGLCGLVAGRVAKEVLLTDHNLACVRQMQEHVRLNRDDGIGGWEEDRVT
SNEGEAAAEAGSAGATLGATVALVHPSTMKVRWLDWDRLEAVSKFTWQVS
EKAEEKGIRGGREEEEGAKSEVDEEYDRKENADYHCVSEEEIESFGRPRW
SSGLLDVVIGSDCICDEPSAVGVARLLSLTLKPGTGVGYITAPAPQHR*

mRNA from alignment at scaffold_15:355202..357096-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6327 ID=mRNA_6327|Name=jgi.p|Nanoce1779_2|90113|organism=Nannochloropsis oceanica|type=mRNA|length=1895bp|location=Sequence derived from alignment at scaffold_15:355202..357096- (Nannochloropsis oceanica)
GTTTGGCTTTGCGCGCCCTAAACATTGACAAGAAAGCCGGCCTGTCCAAG
CATTCGAATTACAAACTAAATAGATAAGTATATGACCTAAAAATGGCGTT
GCTTTCTCTAAAAGCGTCCACACCGATAGCAAATATCACACGAACGCATG
CACCCACCTCTTCAATCAAGAGAGCCACACCTAAGCAAGGCCCTTGAGCT
CGCCCGACACAACGGTGTTTTGACTTTGAGCTACCACCACACGATTACCG
ATGCGCATGGACATAAACTACGCATATTCGACAACCCAGCAATAACATTA
TGAATCACTTCCCCAAGCACAGGGCTAGCCAGCGGAAATGGGACAAGGCA
TCTAAATTGCGCTCCAAAACCTCCCCACCCCACGATGCTCCGCACGACCT
TGGCCCGGGAAGAAGTGGCAGTCCGCAACGCCGTGGATAAGCTCTTGAGT
CGGCAGCTGCAACAACAGGAGGATGGTCAATTCATGAGCTACGACAAAGA
ACAGGCGCTCCAAGCTCTATTGCGAACGCCGCGCCGTCGCTTTCTCTTCT
TGGAAGCTGGTGGCGTGAAAGCATTGGTCGAGCTACTGAAAACACACGGT
TTCGACCGTCCTATACCTGTATCTGAGCTCCTGAGCATTATGCGTTTACT
AATCCTATGCTGTCAGGACACGGAGAGTGCCGTGGGAGTAGGGCTGTTCG
GCCTACATCCGTGGATAAAACGGGTGCTGGCCTCGGACAATGAAGAGGAA
GGCCAGGAGGATGACGAGGCAACGGAGGTCCTGCGAGAATATGCTGAGGA
GATCGCCAGCCGCTGCGCTCGCGTTCGTGGGGGTTTCCCCCTTCAAAGAT
TGGCATTATGCTCAGATTCGGCATTCTCGTCGTTACATTTGCCCGTACGT
GTGCCTATTTATTCTCACTTTCGCACCACCACCATCACCCACGCTCAAAA
CCATCAGCCAGGGAAAGAAAATGAAAGCAAGGATCTCATCGTTCTGATTT
CACCCATCGCCTATCGTATGAGCAGTCAAGCGGATACTGGTTATTTTCTA
TGGCCGGCTGCTACTATTCTCACTCGATTCATTTTGATAAATTCTTCTTT
TTTTGCTGGGAAGAGGGTGATGGAGATCGGAGCAGGGTTGGGGTTGTGTG
GTTTAGTTGCAGGGAGGGTTGCCAAAGAGGTGTTGCTGACTGATCATAAT
TTAGCATGTGTGCGGCAAATGCAGGAGCATGTGAGATTGAATCGTGATGA
TGGGATAGGGGGATGGGAGGAAGATCGAGTGACATCGAATGAAGGAGAGG
CAGCGGCAGAGGCAGGATCAGCGGGAGCAACTTTAGGAGCAACAGTAGCG
CTTGTGCATCCAAGCACAATGAAAGTGCGGTGGTTAGATTGGGATCGGCT
GGAGGCCGTGTCGAAATTCACGTGGCAAGTGTCGGAGAAGGCAGAAGAGA
AGGGGATACGAGGGGGGCGGGAAGAGGAGGAAGGAGCAAAGAGCGAGGTG
GACGAAGAGTATGATAGAAAGGAGAATGCTGATTATCACTGTGTTTCAGA
GGAGGAGATCGAAAGCTTTGGCCGGCCGCGATGGAGCAGTGGCTTGCTCG
ATGTGGTGATAGGGAGTGACTGTATTTGCGACGAGCCTAGCGCGGTGGGA
GTGGCCCGCCTCCTTAGCTTGACCTTGAAGCCGGGCACTGGAGTGGGGTA
TATCACTGCTCCTGCCCCCCAGCATAGGTAAGATATATGATTTGTTCTTA
GAAATGGGATAGAAAAGATTAATTAATTTCTTAATTAAATGAATCAATAA
ATAAGATAAAATAAAAGGATGATGAATGAAAGAGAGGAAGACAGGGATGA
ATTAATGAATTAGAATAGATGAATAGGTCAATGAATGAATGCATG

Coding sequence (CDS) from alignment at scaffold_15:355202..357096-

>mRNA_6327 ID=mRNA_6327|Name=jgi.p|Nanoce1779_2|90113|organism=Nannochloropsis oceanica|type=CDS|length=1347bp|location=Sequence derived from alignment at scaffold_15:355202..357096- (Nannochloropsis oceanica)
ATGCTCCGCACGACCTTGGCCCGGGAAGAAGTGGCAGTCCGCAACGCCGT
GGATAAGCTCTTGAGTCGGCAGCTGCAACAACAGGAGGATGGTCAATTCA
TGAGCTACGACAAAGAACAGGCGCTCCAAGCTCTATTGCGAACGCCGCGC
CGTCGCTTTCTCTTCTTGGAAGCTGGTGGCGTGAAAGCATTGGTCGAGCT
ACTGAAAACACACGGTTTCGACCGTCCTATACCTGTATCTGAGCTCCTGA
GCATTATGCGTTTACTAATCCTATGCTGTCAGGACACGGAGAGTGCCGTG
GGAGTAGGGCTGTTCGGCCTACATCCGTGGATAAAACGGGTGCTGGCCTC
GGACAATGAAGAGGAAGGCCAGGAGGATGACGAGGCAACGGAGGTCCTGC
GAGAATATGCTGAGGAGATCGCCAGCCGCTGCGCTCGCGTTCGTGGGGGT
TTCCCCCTTCAAAGATTGGCATTATGCTCAGATTCGGCATTCTCGTCGTT
ACATTTGCCCGTACGTGTGCCTATTTATTCTCACTTTCGCACCACCACCA
TCACCCACGCTCAAAACCATCAGCCAGGGAAAGAAAATGAAAGCAAGGAT
CTCATCGTTCTGATTTCACCCATCGCCTATCGTATGAGCAGTCAAGCGGA
TACTGGTTATTTTCTATGGCCGGCTGCTACTATTCTCACTCGATTCATTT
TGATAAATTCTTCTTTTTTTGCTGGGAAGAGGGTGATGGAGATCGGAGCA
GGGTTGGGGTTGTGTGGTTTAGTTGCAGGGAGGGTTGCCAAAGAGGTGTT
GCTGACTGATCATAATTTAGCATGTGTGCGGCAAATGCAGGAGCATGTGA
GATTGAATCGTGATGATGGGATAGGGGGATGGGAGGAAGATCGAGTGACA
TCGAATGAAGGAGAGGCAGCGGCAGAGGCAGGATCAGCGGGAGCAACTTT
AGGAGCAACAGTAGCGCTTGTGCATCCAAGCACAATGAAAGTGCGGTGGT
TAGATTGGGATCGGCTGGAGGCCGTGTCGAAATTCACGTGGCAAGTGTCG
GAGAAGGCAGAAGAGAAGGGGATACGAGGGGGGCGGGAAGAGGAGGAAGG
AGCAAAGAGCGAGGTGGACGAAGAGTATGATAGAAAGGAGAATGCTGATT
ATCACTGTGTTTCAGAGGAGGAGATCGAAAGCTTTGGCCGGCCGCGATGG
AGCAGTGGCTTGCTCGATGTGGTGATAGGGAGTGACTGTATTTGCGACGA
GCCTAGCGCGGTGGGAGTGGCCCGCCTCCTTAGCTTGACCTTGAAGCCGG
GCACTGGAGTGGGGTATATCACTGCTCCTGCCCCCCAGCATAGGTAA

Synonyms

Publications