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Properties
| Property Name | Value |
|---|
| TranscriptId | 594686 |
| Track | FilteredModels2 |
| ProteinId | 594600 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_15 | supercontig | scaffold_15:351651..353354 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6326 ID=mRNA_6326|Name=jgi.p|Nanoce1779_2|594600|organism=Nannochloropsis oceanica|type=mRNA|length=1529bp
CGACCCTCCCCCCCTTCCTCCCCCCCCCCCCTCCTTCCTTCTTCTCCTCC
TCCCTTTCTTCCTCCTCTCCTTCCAGCAGGTCCACTTTCCTCACCGCCTC
CATGGCCCTCACCAACCGGACCAAAGTCTCCTTCACCAATTTTCTCTCCG
CCCCTCCCTCCTCCTCTCCTTTTCCCTCTGCTGCCGCTGCTGCCGCTGCC
AAGGCAGCAACTGCCCCTTCTTCCTCCTCCACCCTCCTCGCCATTGCCTT
AATCCATGTCAGTTGTCGTTCTCCCAAGGAGAGGCGCTGCTCCTGTTGCG
CCATCAAGGTCTTGCAGGCCGCGAGCTCGTTCTCATATGCAACCAGCCTC
GCCATCCACCCCTCATCATGGATGCTCTCCGCCGCTTCCGCCCTGGCCTC
CTCCCTCTCCGTCTCGGCCTGGATTTGCTTCTTGATGACGTTTCGCTTTT
CTTCCACAAGGGCACACGCAAGATTTTTCTTCTTTTCACTCTCCTTCTCC
TTCTGCAGCAGCAACACCCGTCTTTCCTCCCTCGCTTTCTCCCCCTCCCT
CTTTGCCAGCTGCTGCTCCTCCACCCTATCCAGCATAGCCACAAGCTCTA
TTTTCTCCTCTTTTACGGTCTCTGCCACCCTCTTTAGTGATTCCTTTCCT
CTTTCTAACTCCTTCTCCTTCTCCCCTTTCAGCTTCCCCGCAGCCGCTGC
TGCCACAGCTGCCTCCTTTTGGTGCTCTTCCGTCCACTCATGTTGCTGTT
TCCACTCTTGCGCCGCCACGTGCTTTCGATGCGCAACAGCTGCCTTCTTG
GTCGCCACCTGCTGCAGCTTAGGCGTCATTCCCCGTATCTCCATCTCTAA
TGCCTCCTTCTTTCCACGCAATGCTGCTAAGTGCTGCTGCAACGCGGATG
CTTTGTGCTCCTCCTCCATTCGACTCTTCTTGGCGGCGGTATGCGCTGCT
GCGGCGGCGGCGGCGACTTGAGTGTGTGTTTGTCCATACGCGTAGATGGA
GGAAAGCTCTGTGTGAAGATGGAGAAGGGTGTGGGTGACCCCCTCCATTT
GTTCTCGAGTCCAATTGTCAACCTGAAGAGAAAGCTCGGTATTTTGGCGG
TTGGCTTCGCTGAGGGCTTGTCGGTTCAGGTCGATGCAGACGTCGAGTCC
ATTGAGCTGATGTGAGGCAAGAAAGGCAGGGAGGGAAGGAGGGAGGGAGG
GAGCAGACAGGATGCCATTTATTCCTTTTTATATCTCCCGGCTCGAGAAG
AAGGGAAAATGCTGAGTGCTTCTTACCTTCTCTTGCTCTACCCTAATGCG
CTGGTAGAGACGATTATTGGCGTGGTGGAGCTCGGTGCGTTTGGTAGTCT
CGGTTTCGAGGCTTTCTTCGCGGGTGCGAATGGTGTCGCCGACTTCCTTA
GATTTGACAACCAGCGTATGCATGGCATGCTCCTTGGTGACGATGAGGTG
GTGCAACTCACCCAGGTCTTGGTTGAGACTTGTCATGTTTGCGATGGGGT
CACAGTAGAGCGGTGGTGCGGTATACTGT back to topprotein sequence of jgi.p|Nanoce1779_2|594600 >mRNA_6326-protein ID=mRNA_6326-protein|Name=jgi.p|Nanoce1779_2|594600|organism=Nannochloropsis oceanica|type=polypeptide|length=290bp
MALTNRTKVSFTNFLSAPPSSSPFPSAAAAAAAKAATAPSSSSTLLAIAL
IHVSCRSPKERRCSCCAIKVLQAASSFSYATSLAIHPSSWMLSAASALAS
SLSVSAWICFLMTFRFSSTRAHARFFFFSLSFSFCSSNTRLSSLAFSPSL
FASCCSSTLSSIATSSIFSSFTVSATLFSDSFPLSNSFSFSPFSFPAAAA
ATAASFWCSSVHSCCCFHSCAATCFRCATAAFLVATCCSLGVIPRISISN
ASFFPRNAAKCCCNADALCSSSIRLFLAAVCAAAAAAAT* back to topmRNA from alignment at scaffold_15:351651..353354- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6326 ID=mRNA_6326|Name=jgi.p|Nanoce1779_2|594600|organism=Nannochloropsis oceanica|type=mRNA|length=1704bp|location=Sequence derived from alignment at scaffold_15:351651..353354- (Nannochloropsis oceanica)
CGACCCTCCCCCCCTTCCTCCCCCCCCCCCCTCCTTCCTTCTTCTCCTCC
TCCCTTTCTTCCTCCTCTCCTTCCAGCAGGTCCACTTTCCTCACCGCCTC
CATGGCCCTCACCAACCGGACCAAAGTCTCCTTCACCAATTTTCTCTCCG
CCCCTCCCTCCTCCTCTCCTTTTCCCTCTGCTGCCGCTGCTGCCGCTGCC
AAGGCAGCAACTGCCCCTTCTTCCTCCTCCACCCTCCTCGCCATTGCCTT
AATCCATGTCAGTTGTCGTTCTCCCAAGGAGAGGCGCTGCTCCTGTTGCG
CCATCAAGGTCTTGCAGGCCGCGAGCTCGTTCTCATATGCAACCAGCCTC
GCCATCCACCCCTCATCATGGATGCTCTCCGCCGCTTCCGCCCTGGCCTC
CTCCCTCTCCGTCTCGGCCTGGATTTGCTTCTTGATGACGTTTCGCTTTT
CTTCCACAAGGGCACACGCAAGATTTTTCTTCTTTTCACTCTCCTTCTCC
TTCTGCAGCAGCAACACCCGTCTTTCCTCCCTCGCTTTCTCCCCCTCCCT
CTTTGCCAGCTGCTGCTCCTCCACCCTATCCAGCATAGCCACAAGCTCTA
TTTTCTCCTCTTTTACGGTCTCTGCCACCCTCTTTAGTGATTCCTTTCCT
CTTTCTAACTCCTTCTCCTTCTCCCCTTTCAGCTTCCCCGCAGCCGCTGC
TGCCACAGCTGCCTCCTTTTGGTGCTCTTCCGTCCACTCATGTTGCTGTT
TCCACTCTTGCGCCGCCACGTGCTTTCGATGCGCAACAGCTGCCTTCTTG
GTCGCCACCTGCTGCAGCTTAGGCGTCATTCCCCGTATCTCCATCTCTAA
TGCCTCCTTCTTTCCACGCAATGCTGCTAAGTGCTGCTGCAACGCGGATG
CTTTGTGCTCCTCCTCCATTCGACTCTTCTTGGCGGCGGTATGCGCTGCT
GCGGCGGCGGCGGCGACTTGAGTGTGTGTTTGTCCATACGCGTAGATGGA
GGAAAGCTCTGTGTGAAGATGGAGAAGGGTGTGGGTGACCCCCTCCATTT
GTTCTCGAGTCCAATTGTCAACCTGAAGAGAAAGCTCGGTATTTTGGCGG
TTGGCTTCGCTGAGGGCTTGTCGGTTCAGGTCGATGCAGACGTCGAGTCC
ATTGAGCTGATGTGAGGCAAGAAAGGCAGGGAGGGAAGGAGGGAGGGAGG
GAGCAGACAGGATGCCATTTATTCCTTTTTATATCTCCCGGCTCGAGAAG
AAGGGAAAATGCTGAGTGCTTCTTACCTTCTCTTGCTCTACCCTAATGCG
CTGGTAGAGACGATTATTGGCGTGGTGGAGCTCGGTGCGTTTGGTAGTCT
CGGTTTCGAGGCTTTCTTCGCGGGTGCGAATGGTGTCGCCGACTTCCTTA
GCTGAAGGGAGGAAGGAAGGGAAGGAGGGATGAAGGGAGTGAGTGAAAGA
AGGATGAAAAGATGCTATAATAGCGGCTGCTGGGGTGATAGCTCATTCAA
AGACCACCAACATCTTGCTTGACCTCCTCCCACCTCCTCCTCCCTCATTT
CTTCTTGCCTGCATCCCGCAGCTTACATTTGACAACCAGCGTATGCATGG
CATGCTCCTTGGTGACGATGAGGTGGTGCAACTCACCCAGGTCTTGGTTG
AGACTTGTCATGTTTGCGATGGGGTCACAGTAGAGCGGTGGTGCGGTATA
CTGT back to topCoding sequence (CDS) from alignment at scaffold_15:351651..353354- >mRNA_6326 ID=mRNA_6326|Name=jgi.p|Nanoce1779_2|594600|organism=Nannochloropsis oceanica|type=CDS|length=870bp|location=Sequence derived from alignment at scaffold_15:351651..353354- (Nannochloropsis oceanica)
ATGGCCCTCACCAACCGGACCAAAGTCTCCTTCACCAATTTTCTCTCCGC
CCCTCCCTCCTCCTCTCCTTTTCCCTCTGCTGCCGCTGCTGCCGCTGCCA
AGGCAGCAACTGCCCCTTCTTCCTCCTCCACCCTCCTCGCCATTGCCTTA
ATCCATGTCAGTTGTCGTTCTCCCAAGGAGAGGCGCTGCTCCTGTTGCGC
CATCAAGGTCTTGCAGGCCGCGAGCTCGTTCTCATATGCAACCAGCCTCG
CCATCCACCCCTCATCATGGATGCTCTCCGCCGCTTCCGCCCTGGCCTCC
TCCCTCTCCGTCTCGGCCTGGATTTGCTTCTTGATGACGTTTCGCTTTTC
TTCCACAAGGGCACACGCAAGATTTTTCTTCTTTTCACTCTCCTTCTCCT
TCTGCAGCAGCAACACCCGTCTTTCCTCCCTCGCTTTCTCCCCCTCCCTC
TTTGCCAGCTGCTGCTCCTCCACCCTATCCAGCATAGCCACAAGCTCTAT
TTTCTCCTCTTTTACGGTCTCTGCCACCCTCTTTAGTGATTCCTTTCCTC
TTTCTAACTCCTTCTCCTTCTCCCCTTTCAGCTTCCCCGCAGCCGCTGCT
GCCACAGCTGCCTCCTTTTGGTGCTCTTCCGTCCACTCATGTTGCTGTTT
CCACTCTTGCGCCGCCACGTGCTTTCGATGCGCAACAGCTGCCTTCTTGG
TCGCCACCTGCTGCAGCTTAGGCGTCATTCCCCGTATCTCCATCTCTAAT
GCCTCCTTCTTTCCACGCAATGCTGCTAAGTGCTGCTGCAACGCGGATGC
TTTGTGCTCCTCCTCCATTCGACTCTTCTTGGCGGCGGTATGCGCTGCTG
CGGCGGCGGCGGCGACTTGA back to top
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