jgi.p|Nanoce1779_2|89998, mRNA_6325 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|89998
Unique NamemRNA_6325
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1540
Alignment locationscaffold_15:349365..350904 -

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Properties
Property NameValue
TranscriptId90084
TrackFilteredModels2
ProteinId89998
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:349365..350904 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|89998gene_6325Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|89998mRNA_6325-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6325CDS_6325Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6325 ID=mRNA_6325|Name=jgi.p|Nanoce1779_2|89998|organism=Nannochloropsis oceanica|type=mRNA|length=1540bp
CCTCGTGAATGCGCACGCCTCCATCCTGCTTCTCCTCCTTGGCAACTACA
CCCTACCAACACTTCTGCCGCAGCAGCACCATCACTCCAATCATCCAGGC
TGCCGTCAGCCCCACCACTAACGCCGCCGCGTGACTAGCATTTGCGTCCC
CTCCCTTTCACTCCATCGCCCCTCGAAGTACCATGGTCCTCTCCGTCTCT
TCCCCCTCCCTCTCCGCCTTGCCTGACAGTCTAGGACTGCAACATGTCCA
AGCACAACAGCACCTCCTCGCAGGTGCTGTAGCATTGATCAGCGCTGTCT
TGACTCTCAGTTTTCTCTACGTCTTTCAACCCGCCCTCGCTGCCTGGCGC
CGGCCACAGGACCACGAGCCCCACACCTTTGTCAAATACGCACCGAACAG
CAGTAGCAGCAGCAGCAGCAGTAGTAGTAATAGCGATAGTCCAGCGAGAA
ACACCCGAGCAACAAGAAGAGCGACGGTAGCGGAGGAGGAGGAGGAACGC
TTCCCTACCCTTGCTGACCCCCCGACGGTGTTGCTCTCTCTAGTCATTCC
CGCCTACAATGAAGAAGTCCGTTTGCCCGTCATGCTGGACGCGACTCTTG
CTTATCTCGAGGAATGGAAGAAACGCAGCAGCAAGAATGGTAGTGGTAGT
AGCAGCAGCAGCAGCAGCAGCTTGACGTATGAGTTGATTGTCGTCGATGA
CGGGAGTACGGATAGAACAGTCGAGGTCGCGTCAAGGTATTCGCGCATAC
TCGGTTCCGACGTGCTCAGAGTCTTGAAACTCCGCACAAATAGGGGGAAA
GGAGGGGCCATCAAGGAAGGTATGCTTCATAGCAGAGGAGAATATGCGTT
GATGGTCGACGCGGATGGTGCCACTGACATCACGTGTTTAGAACGCATGT
TGGTCCGTACGCAAGGGGTAGAGGAAAGGATGGAGGGAGGGAGCATGGGG
ATAGGAGTGGGGAGTCGTGCACATTACGAGAAGGACTCCGTGGCGACACG
GGCATGGTATCGAACGATTTTGATGAAGGGGCTACACATGTTGGTGACTG
TGTTAATAAGCGGTCGAATCAAGGACACGCAGTGCGGATTCAAACTTTTC
TCGCGTGCGGCGAATAAAATACTGTTTGGGACGTTGCATCTTGAGAGATG
GGGGTTTGACTTGGAGATCGTCCACGTCTGTGATCGATTGGGATTGCCCA
TGGTGGAGGTAGCGGTGAATTGGCAAGAGGTGGAGGGCTCAAAATTGATA
ACGAATAAACTGGATGTGGTGCTGGCGTCCGTGGGTATCTTCAGGGACAT
GCTGTGTGTGAGGTTGTGTTACCTTTTGGGGGTGTGGAAGACGACGCCGT
GGACAAAAGAGGGGTTGAAGGTGAGTGGGGGAGGGGGAAGGGAGGGGGGA
AGGAGACGGAGGAAGGTGGAGTAGGGGGGACATGAAATGGGTGACTGCTG
CAGCGGTGGTGGTGAGATCAAATGGATAGCGGCTCAAGAGAACCCAAGAA
GAAGATTCAATATCAATCGAGCGGCGGGCCTGCGACGTGA
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protein sequence of jgi.p|Nanoce1779_2|89998

>mRNA_6325-protein ID=mRNA_6325-protein|Name=jgi.p|Nanoce1779_2|89998|organism=Nannochloropsis oceanica|type=polypeptide|length=414bp
MVLSVSSPSLSALPDSLGLQHVQAQQHLLAGAVALISAVLTLSFLYVFQP
ALAAWRRPQDHEPHTFVKYAPNSSSSSSSSSSNSDSPARNTRATRRATVA
EEEEERFPTLADPPTVLLSLVIPAYNEEVRLPVMLDATLAYLEEWKKRSS
KNGSGSSSSSSSSLTYELIVVDDGSTDRTVEVASRYSRILGSDVLRVLKL
RTNRGKGGAIKEGMLHSRGEYALMVDADGATDITCLERMLVRTQGVEERM
EGGSMGIGVGSRAHYEKDSVATRAWYRTILMKGLHMLVTVLISGRIKDTQ
CGFKLFSRAANKILFGTLHLERWGFDLEIVHVCDRLGLPMVEVAVNWQEV
EGSKLITNKLDVVLASVGIFRDMLCVRLCYLLGVWKTTPWTKEGLKVSGG
GGREGGRRRRKVE*
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mRNA from alignment at scaffold_15:349365..350904-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6325 ID=mRNA_6325|Name=jgi.p|Nanoce1779_2|89998|organism=Nannochloropsis oceanica|type=mRNA|length=1540bp|location=Sequence derived from alignment at scaffold_15:349365..350904- (Nannochloropsis oceanica)
CCTCGTGAATGCGCACGCCTCCATCCTGCTTCTCCTCCTTGGCAACTACA
CCCTACCAACACTTCTGCCGCAGCAGCACCATCACTCCAATCATCCAGGC
TGCCGTCAGCCCCACCACTAACGCCGCCGCGTGACTAGCATTTGCGTCCC
CTCCCTTTCACTCCATCGCCCCTCGAAGTACCATGGTCCTCTCCGTCTCT
TCCCCCTCCCTCTCCGCCTTGCCTGACAGTCTAGGACTGCAACATGTCCA
AGCACAACAGCACCTCCTCGCAGGTGCTGTAGCATTGATCAGCGCTGTCT
TGACTCTCAGTTTTCTCTACGTCTTTCAACCCGCCCTCGCTGCCTGGCGC
CGGCCACAGGACCACGAGCCCCACACCTTTGTCAAATACGCACCGAACAG
CAGTAGCAGCAGCAGCAGCAGTAGTAGTAATAGCGATAGTCCAGCGAGAA
ACACCCGAGCAACAAGAAGAGCGACGGTAGCGGAGGAGGAGGAGGAACGC
TTCCCTACCCTTGCTGACCCCCCGACGGTGTTGCTCTCTCTAGTCATTCC
CGCCTACAATGAAGAAGTCCGTTTGCCCGTCATGCTGGACGCGACTCTTG
CTTATCTCGAGGAATGGAAGAAACGCAGCAGCAAGAATGGTAGTGGTAGT
AGCAGCAGCAGCAGCAGCAGCTTGACGTATGAGTTGATTGTCGTCGATGA
CGGGAGTACGGATAGAACAGTCGAGGTCGCGTCAAGGTATTCGCGCATAC
TCGGTTCCGACGTGCTCAGAGTCTTGAAACTCCGCACAAATAGGGGGAAA
GGAGGGGCCATCAAGGAAGGTATGCTTCATAGCAGAGGAGAATATGCGTT
GATGGTCGACGCGGATGGTGCCACTGACATCACGTGTTTAGAACGCATGT
TGGTCCGTACGCAAGGGGTAGAGGAAAGGATGGAGGGAGGGAGCATGGGG
ATAGGAGTGGGGAGTCGTGCACATTACGAGAAGGACTCCGTGGCGACACG
GGCATGGTATCGAACGATTTTGATGAAGGGGCTACACATGTTGGTGACTG
TGTTAATAAGCGGTCGAATCAAGGACACGCAGTGCGGATTCAAACTTTTC
TCGCGTGCGGCGAATAAAATACTGTTTGGGACGTTGCATCTTGAGAGATG
GGGGTTTGACTTGGAGATCGTCCACGTCTGTGATCGATTGGGATTGCCCA
TGGTGGAGGTAGCGGTGAATTGGCAAGAGGTGGAGGGCTCAAAATTGATA
ACGAATAAACTGGATGTGGTGCTGGCGTCCGTGGGTATCTTCAGGGACAT
GCTGTGTGTGAGGTTGTGTTACCTTTTGGGGGTGTGGAAGACGACGCCGT
GGACAAAAGAGGGGTTGAAGGTGAGTGGGGGAGGGGGAAGGGAGGGGGGA
AGGAGACGGAGGAAGGTGGAGTAGGGGGGACATGAAATGGGTGACTGCTG
CAGCGGTGGTGGTGAGATCAAATGGATAGCGGCTCAAGAGAACCCAAGAA
GAAGATTCAATATCAATCGAGCGGCGGGCCTGCGACGTGA
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Coding sequence (CDS) from alignment at scaffold_15:349365..350904-

>mRNA_6325 ID=mRNA_6325|Name=jgi.p|Nanoce1779_2|89998|organism=Nannochloropsis oceanica|type=CDS|length=1242bp|location=Sequence derived from alignment at scaffold_15:349365..350904- (Nannochloropsis oceanica)
ATGGTCCTCTCCGTCTCTTCCCCCTCCCTCTCCGCCTTGCCTGACAGTCT
AGGACTGCAACATGTCCAAGCACAACAGCACCTCCTCGCAGGTGCTGTAG
CATTGATCAGCGCTGTCTTGACTCTCAGTTTTCTCTACGTCTTTCAACCC
GCCCTCGCTGCCTGGCGCCGGCCACAGGACCACGAGCCCCACACCTTTGT
CAAATACGCACCGAACAGCAGTAGCAGCAGCAGCAGCAGTAGTAGTAATA
GCGATAGTCCAGCGAGAAACACCCGAGCAACAAGAAGAGCGACGGTAGCG
GAGGAGGAGGAGGAACGCTTCCCTACCCTTGCTGACCCCCCGACGGTGTT
GCTCTCTCTAGTCATTCCCGCCTACAATGAAGAAGTCCGTTTGCCCGTCA
TGCTGGACGCGACTCTTGCTTATCTCGAGGAATGGAAGAAACGCAGCAGC
AAGAATGGTAGTGGTAGTAGCAGCAGCAGCAGCAGCAGCTTGACGTATGA
GTTGATTGTCGTCGATGACGGGAGTACGGATAGAACAGTCGAGGTCGCGT
CAAGGTATTCGCGCATACTCGGTTCCGACGTGCTCAGAGTCTTGAAACTC
CGCACAAATAGGGGGAAAGGAGGGGCCATCAAGGAAGGTATGCTTCATAG
CAGAGGAGAATATGCGTTGATGGTCGACGCGGATGGTGCCACTGACATCA
CGTGTTTAGAACGCATGTTGGTCCGTACGCAAGGGGTAGAGGAAAGGATG
GAGGGAGGGAGCATGGGGATAGGAGTGGGGAGTCGTGCACATTACGAGAA
GGACTCCGTGGCGACACGGGCATGGTATCGAACGATTTTGATGAAGGGGC
TACACATGTTGGTGACTGTGTTAATAAGCGGTCGAATCAAGGACACGCAG
TGCGGATTCAAACTTTTCTCGCGTGCGGCGAATAAAATACTGTTTGGGAC
GTTGCATCTTGAGAGATGGGGGTTTGACTTGGAGATCGTCCACGTCTGTG
ATCGATTGGGATTGCCCATGGTGGAGGTAGCGGTGAATTGGCAAGAGGTG
GAGGGCTCAAAATTGATAACGAATAAACTGGATGTGGTGCTGGCGTCCGT
GGGTATCTTCAGGGACATGCTGTGTGTGAGGTTGTGTTACCTTTTGGGGG
TGTGGAAGACGACGCCGTGGACAAAAGAGGGGTTGAAGGTGAGTGGGGGA
GGGGGAAGGGAGGGGGGAAGGAGACGGAGGAAGGTGGAGTAG
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Synonyms
Publications