jgi.p|Nanoce1779_2|594594, mRNA_6324 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|594594
Unique Name	mRNA_6324
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3072
Alignment location	scaffold_15:345526..349064 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	594680
Track	FilteredModels2
ProteinId	594594

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:345526..349064 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594594	gene_6324	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594594	mRNA_6324-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6324	CDS_6324	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:345526..349064+
coding sequence from alignment at scaffold_15:345526..349064+

mRNA sequence

>mRNA_6324 ID=mRNA_6324|Name=jgi.p|Nanoce1779_2|594594|organism=Nannochloropsis oceanica|type=mRNA|length=3072bp
ACAGCTTTAAGCATACATCTACGCAAGTACAGGGTCCTTCGGCGCAGTGC
TTTATGTGCGAGCAGCTTTCTTCGGCCCGAGGCCTCCTGCCTTATTGCCC
GTCTTGTTCCTCGACAGCTTTGCCCGCCACAGCTTCGTCGTATCAATCAT
ACCCTCATGCTTCGTCGTATCAATCATACCCTCATGCTCCCTATCCTCAC
TCTCCTACGCTCACAGTTCTCATCATCGACTGCTTTCTTCTCCCCTTTTC
GTCACCATGTCTCCTCCTTCCGGTTTGATCGGTGGGTTTGGTGCGACCAA
GGAGACCCCGGACGTGGAGACGACGGCCCTGCTCAGCAGCGTCAGGGGCG
AGGTGGAAAAGCAACTCTCTACGACCTTCAGCACGTTTGAGCCTCACAGC
GTCCGCACGCAAGTGGTGGCGGGCACCAACTACCGGTGCAAAGTTCACGT
TGGGGATTCAAAATACGTGCATATGGTGGTGCATCAACCCCTGCCTCATA
CCAAGGAGCCGGCAAAGTTGATGTCCGCCGAGGGAGGCAAGACGTTGGAG
GACGCCCTCTAAATGACGTGCAAAGTATCGTGGAATGGTGGTGATGACGC
TGCTGGGAAGGAATTGCTACAGAGGATAGTCATTTATCATCGAGAAAGTA
GTCATTCAAAGGGATATGTGTGCATAACGCGGATAAAAGATGGAAAAACA
GAGCAATCGGCACATAGAAAGAAGCGTGGAGGATCATGTGGTGTGCCAAA
CGAGAGACACAAACAAAAAGCAACATAAAAATGTGGGCACTTTTTAAACC
ACATCATGAGATCTCTCGATGTCTATCTCTATTCCATTATTGAAAATGCA
CCATTACGTTGCCTTAGCCTCTGCGTCCTAAGGGGCATGGGCCTGGATCG
ACTGGGGCACAAGAGAGAGTGGGGAAGTCCCGTCGAACGCATGACGATGT
CCAAGCACGGAAAGCTTTGTAAAGGAGACCTTTTCCATAACGTACATGGC
CTCGACTGTCTCACCGTATGTTTGGCTTGGCTCCTTACCTTACTTTTGCA
TCGTGTAGCATGCTTGATGTAGTCTTCTTTTCCAACCTCCACCACTATTA
TCGTCAGCACAACCCTATCATGAGGAGCCCAGCCGAATTTGTTCTTCATC
GCTCCCTTTCCAACAAATACACGCAAAGCAACAGTAAATCACTATGCCGC
CGAGCATGCTGCATCTTCATGAGTCCCTCATTGCCTACATGCCCACCCAA
GCCAAAGGCCTCCCTCCTGTCGTCGTTCTGCTGCTCATTCCCCTCGCTAC
CGCCGTCTTCGCCATTCTAGCCGGCCGCGTCCTCTTGGCCCTCGCCTTCA
CTGCTACCGCCAAGCGTGTACCCACCTTGAACGTACCGACGACGCCTGCT
ATTACACAAGATGACGGAGTCACCGTCCGGGCGAGCAGAACGCAAGCCTT
GCTCGACCCAAAGCGTCCTGGCTTCCTTCAATGCTACGACCCTGCCACCT
CGCAACGTTTGGGGGAAGTGCCCATTATGACCACCAAGGACGTCAACGCC
ATCGTCAGCAAGGCCAAAAAAGCGCAAACGACCTGGGCCAAGACTTCCTT
TGTTGAACGGCGACGTGTGTTGAGCGCCATGCAGAATTATATCGTTGCTC
ACATGGAGGAAATTGCACGGGTCTGCTCCCGGGATTCGGGCAAGCCTAAA
ATTGAAGCGTTGCTAGGGGAGATTATGACGACGTGCGAGAAAATCCGCAC
GATTAATGCACAGGGTGAAGGGTGGTTGCAACCGCAGTATCGCACGCCTG
GACCGATGATGATGCATAAGACGGCGTACGTGGAGTTTCAGCCTTTGGGT
GTGCTGGGGGTGATAGCTCCATGGAATTACCCCTTCCATAATCTGTTCAA
TCACGTGATTTCGGGGCTTTTTGCTGGTAACGCAGTCGTGAGCAAGGTCT
CTGAGTACACCTCCTGGTCATCCTACGGGTATTTTTCCGACATCATTCGA
GCGGCGTTGGTCGAATGCGGGCATTCCCCCGATCTGGTAGCAGTAGTGAC
TGGGTTGGGAGAAGCAGGTGCTGCCCTTGTCGCATGCCCGGAGGTCGATA
AGATTATTTTTACGGGCTCCCCGTCCGTGGGGAAGAAGGTAATGGAGGGG
GCGGCACCGCATCTGAAGCCGGTTATCTTGGAATTGGGAGGGAAGGACCC
CATGGTGATTATGGAGGATGCGGACATCGATGCTCTGTTGCCGATGGCCT
TGAAGGGGGCTTTTTTTAATTGTGGGCAAAATTGTTGCGGGGTGGAGCGG
TTTTATGTCTATGAGAGTGTGCACGATAAGTTTGTGGCGGAGGTGGTGAA
GAGGGTGGGAGCCTTTCGCCAAGGGCCGCCGTTGGAAGGGGCGGAGAAAG
TCGACTGTGGAGCTATGGTCATGCCACGGCAGCTCGAGATTGTTCAGGGG
CTCATCGACGAGGCGGTGGCTGAGGGCGCAAAAGTGATGGTGGGGGGAAA
GCGGCACCCGGATCACGGGCAAGGTAATTTCTTCCAGCCGACGGTTTTGG
TGGGGGTGACGAATGAGATGAAGATTGCGCAGGAGGAGGTGTTCGGGCCG
GTGATGACCATCATTAAGGTACCGAAGGACGACGATGCTATGTGTTTGAA
GATGGTGAACGAATGTAATTACGGCCTTGGGTCTTCGGTGTTTTCCCGAG
ATGCCGCGCGGGCTTTGAGGTTGGGGAATGGGATCAGGGCGGGAATGACG
ACGGTAAATGATTTCGGGGTGAATTACTTGGTGCAGGCGTTGCCGTTCGG
AGGAACGAAGCACAGCGGATTCGACCGATTCGCAGGTCCAGAAGGGTTGC
AGGCTTGTTGTTTGATGAAGAGTGTGGTAGTGGATCGGATTTCATTCGTG
AAGACGTCCATTCCCGCGCAGTTGCAATACCCCGTGAGCGAGAAGACATT
CGGCTTTGGCCAGGGACTCTTGCAGTTGTTTTATGAGCCGACGTTAGTGG
GTAAAGCAAAGGCGGTGCTAAAATTGATTTAATGTGAGCGGGGAAGAAGG
AAGGAAGAGAGGAAATAGGGGA

protein sequence of jgi.p|Nanoce1779_2|594594

>mRNA_6324-protein ID=mRNA_6324-protein|Name=jgi.p|Nanoce1779_2|594594|organism=Nannochloropsis oceanica|type=polypeptide|length=613bp
MPPSMLHLHESLIAYMPTQAKGLPPVVVLLLIPLATAVFAILAGRVLLAL
AFTATAKRVPTLNVPTTPAITQDDGVTVRASRTQALLDPKRPGFLQCYDP
ATSQRLGEVPIMTTKDVNAIVSKAKKAQTTWAKTSFVERRRVLSAMQNYI
VAHMEEIARVCSRDSGKPKIEALLGEIMTTCEKIRTINAQGEGWLQPQYR
TPGPMMMHKTAYVEFQPLGVLGVIAPWNYPFHNLFNHVISGLFAGNAVVS
KVSEYTSWSSYGYFSDIIRAALVECGHSPDLVAVVTGLGEAGAALVACPE
VDKIIFTGSPSVGKKVMEGAAPHLKPVILELGGKDPMVIMEDADIDALLP
MALKGAFFNCGQNCCGVERFYVYESVHDKFVAEVVKRVGAFRQGPPLEGA
EKVDCGAMVMPRQLEIVQGLIDEAVAEGAKVMVGGKRHPDHGQGNFFQPT
VLVGVTNEMKIAQEEVFGPVMTIIKVPKDDDAMCLKMVNECNYGLGSSVF
SRDAARALRLGNGIRAGMTTVNDFGVNYLVQALPFGGTKHSGFDRFAGPE
GLQACCLMKSVVVDRISFVKTSIPAQLQYPVSEKTFGFGQGLLQLFYEPT
LVGKAKAVLKLI*

mRNA from alignment at scaffold_15:345526..349064+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6324 ID=mRNA_6324|Name=jgi.p|Nanoce1779_2|594594|organism=Nannochloropsis oceanica|type=mRNA|length=3539bp|location=Sequence derived from alignment at scaffold_15:345526..349064+ (Nannochloropsis oceanica)
ACAGCTTTAAGCATACATCTACGCAAGTACAGGGTCCTTCGGCGCAGTGC
TTTATGTGCGAGCAGCTTTCTTCGGCCCGAGGCCTCCTGCCTTATTGCCC
GTCTTGTTCCTCGACAGCTTTGCCCGCCACAGCTTCGTCGTATCAATCAT
ACCCTCATGCTTCGTCGTATCAATCATACCCTCATGCTCCCTATCCTCAC
TCTCCTACGCTCACAGTTCTCATCATCGACTGCTTTCTTCTCCCCTTTTC
GTCACCATGTCTCCTCCTTCCGGTTTGATCGGTGGGTTTGGTGCGACCAA
GGAGACCCCGGACGTGGAGACGACGGCCCTGCTCAGCAGCGTCAGGGGCG
AGGTGGAAAAGGTACGCCGTGGAGTTTGGATGCAATACGGCACCATATGT
TTTTGGTTTATAGCAGACAAGCACATTGGGAGGATGTCATGTCATCTATG
AAATTTTCATTGTTGCGCTGATGCAAGGCTCTTTGTGTCCTCTGCTACCT
TTTATTCACCTACACCTCATAGCAACTCTCTACGACCTTCAGCACGTTTG
AGCCTCACAGCGTCCGCACGCAAGTGGTACGTACATCCTTATGCTGAAGC
AAAGTGAGCATTGACCTCTATTTCTTGTCCTTCTCTTCATCCTCCTCCCT
TCTCCAGTATTCCTCTCTCCGTTTGTCATCCTCCTTCCTCTATTTTTTTC
CTTTTCCTTTTTTCACCCCAGGTGGCGGGCACCAACTACCGGTGCAAAGT
TCACGTTGGGGATTCAAAATACGTGCATATGGTGGTGCATCAACCCCTGC
CTCATACCAAGGAGCCGGCAAAGGTATGTTCATGCTTTTTGGGCGACAGG
GCGGGATGGATATAAGTGAGCACGTGCGTGTTGTCGCGGCGGGCCAGAAC
ATTAGTATGAGATGATAACACGAAAATGGGCATATTGCATGATCTCACCT
TCCTTCCCTTCTCCTGTTTGTAAATCGCCCGCAGTTGATGTCCGCCGAGG
GAGGCAAGACGTTGGAGGACGCCCTCTAAATGACGTGCAAAGTATCGTGG
AATGGTGGTGATGACGCTGCTGGGAAGGAATTGCTACAGAGGATAGTCAT
TTATCATCGAGAAAGTAGTCATTCAAAGGGATATGTGTGCATAACGCGGA
TAAAAGATGGAAAAACAGAGCAATCGGCACATAGAAAGAAGCGTGGAGGA
TCATGTGGTGTGCCAAACGAGAGACACAAACAAAAAGCAACATAAAAATG
TGGGCACTTTTTAAACCACATCATGAGATCTCTCGATGTCTATCTCTATT
CCATTATTGAAAATGCACCATTACGTTGCCTTAGCCTCTGCGTCCTAAGG
GGCATGGGCCTGGATCGACTGGGGCACAAGAGAGAGTGGGGAAGTCCCGT
CGAACGCATGACGATGTCCAAGCACGGAAAGCTTTGTAAAGGAGACCTTT
TCCATAACGTACATGGCCTCGACTGTCTCACCGTATGTTTGGCTTGGCTC
CTTACCTTACTTTTGCATCGTGTAGCATGCTTGATGTAGTCTTCTTTTCC
AACCTCCACCACTATTATCGTCAGCACAACCCTATCATGAGGAGCCCAGC
CGAATTTGTTCTTCATCGCTCCCTTTCCAACAAATACACGCAAAGCAACA
GTAAATCACTATGCCGCCGAGCATGCTGCATCTTCATGAGTCCCTCATTG
CCTACATGCCCACCCAAGCCAAAGGCCTCCCTCCTGTCGTCGTTCTGCTG
CTCATTCCCCTCGCTACCGCCGTCTTCGCCATTCTAGCCGGCCGCGTCCT
CTTGGCCCTCGCCTTCACTGCTACCGCCAAGCGTGTACCCACCTTGAACG
TACCGACGACGCCTGCTATTACACAAGATGACGGAGTCACCGTCCGGGCG
AGCAGAACGCAAGCCTTGCTCGACCCAAAGCGTCCTGGCTTCCTTCAATG
CTACGACCCTGCCACCTCGCAACGTTTGGGGGAAGTGCCCATTATGACCA
CCAAGGACGTCAACGCCATCGTCAGCAAGGCCAAAAAAGCGCAAACGACC
TGGGCCAAGACTTCCTTTGTTGAACGGCGACGTGTGTTGAGCGCCATGCA
GAATTATATCGTTGCTCACATGGAGGAAATTGCACGGGTCTGCTCCCGGG
ATTCGGGCAAGCCTAAAATTGAAGCGTTGCTAGGGGAGATTATGACGACG
TGCGAGAAAATCCGCACGATTAATGCACAGGGTGAAGGGTGGTTGCAACC
GCAGTATCGCACGCCTGGACCGATGATGATGCATAAGACGGCGTACGTGG
AGTTTCAGCCTTTGGGTGTGCTGGGGGTGATAGCTCCATGGAATTACCCC
TTCCATAATCTGTTCAATCACGTGATTTCGGGGCTTTTTGCTGGTAACGC
AGTCGTGAGCAAGGTCTCTGAGTACACCTCCTGGTCATCCTACGGGTATT
TTTCCGACATCATTCGAGCGGCGTTGGTCGAATGCGGGCATTCCCCCGAT
CTGGTAGCAGTAGTGACTGGGTTGGGAGAAGCAGGTGCTGCCCTTGTCGC
ATGCCCGGAGGTCGATAAGATTATTTTTACGGGCTCCCCGTCCGTGGGGA
AGAAGGTAATGGAGGGGGCGGCACCGCATCTGAAGCCGGTTATCTTGGAA
TTGGGAGGGAAGGACCCCATGGTGATTATGGAGGATGCGGACATCGATGC
TCTGTTGCCGATGGCCTTGAAGGGGGCTTTTTTTAATTGTGGGCAAAATT
GTTGCGGGGTGGAGCGGTTTTATGTCTATGAGAGTGTGCACGATAAGTTT
GTGGCGGAGGTGGTGAAGAGGGTGGGAGCCTTTCGCCAAGGGCCGCCGTT
GGAAGGGGCGGAGAAAGTCGACTGTGGAGCTATGGTCATGCCACGGCAGC
TCGAGATTGTTCAGGGGCTCATCGACGAGGCGGTGGCTGAGGGCGCAAAA
GTGATGGTGGGGGGAAAGCGGCACCCGGATCACGGGCAAGGTAATTTCTT
CCAGCCGACGGTTTTGGTGGGGGTGACGAATGAGATGAAGATTGCGCAGG
AGGAGGTGTTCGGGCCGGTGATGACCATCATTAAGGTACCGAAGGACGAC
GATGCTATGTGTTTGAAGATGGTGAACGAATGTAATTACGGCCTTGGGTC
TTCGGTGTTTTCCCGAGATGCCGCGCGGGCTTTGAGGTTGGGGAATGGGA
TCAGGGCGGGAATGACGACGGTAAATGATTTCGGGGTGAATTACTTGGTG
CAGGCGTTGCCGTTCGGAGGAACGAAGCACAGCGGATTCGACCGATTCGC
AGGTCCAGAAGGGTTGCAGGCTTGTTGTTTGATGAAGAGTGTGGTAGTGG
ATCGGATTTCATTCGTGAAGACGTCCATTCCCGCGCAGTTGCAATACCCC
GTGAGCGAGAAGACATTCGGCTTTGGCCAGGGACTCTTGCAGTTGTTTTA
TGAGCCGACGTTAGTGGGTAAAGCAAAGGCGGTGCTAAAATTGATTTAAT
GTGAGCGGGGAAGAAGGAAGGAAGAGAGGAAATAGGGGA

Coding sequence (CDS) from alignment at scaffold_15:345526..349064+

>mRNA_6324 ID=mRNA_6324|Name=jgi.p|Nanoce1779_2|594594|organism=Nannochloropsis oceanica|type=CDS|length=1839bp|location=Sequence derived from alignment at scaffold_15:345526..349064+ (Nannochloropsis oceanica)
ATGCCGCCGAGCATGCTGCATCTTCATGAGTCCCTCATTGCCTACATGCC
CACCCAAGCCAAAGGCCTCCCTCCTGTCGTCGTTCTGCTGCTCATTCCCC
TCGCTACCGCCGTCTTCGCCATTCTAGCCGGCCGCGTCCTCTTGGCCCTC
GCCTTCACTGCTACCGCCAAGCGTGTACCCACCTTGAACGTACCGACGAC
GCCTGCTATTACACAAGATGACGGAGTCACCGTCCGGGCGAGCAGAACGC
AAGCCTTGCTCGACCCAAAGCGTCCTGGCTTCCTTCAATGCTACGACCCT
GCCACCTCGCAACGTTTGGGGGAAGTGCCCATTATGACCACCAAGGACGT
CAACGCCATCGTCAGCAAGGCCAAAAAAGCGCAAACGACCTGGGCCAAGA
CTTCCTTTGTTGAACGGCGACGTGTGTTGAGCGCCATGCAGAATTATATC
GTTGCTCACATGGAGGAAATTGCACGGGTCTGCTCCCGGGATTCGGGCAA
GCCTAAAATTGAAGCGTTGCTAGGGGAGATTATGACGACGTGCGAGAAAA
TCCGCACGATTAATGCACAGGGTGAAGGGTGGTTGCAACCGCAGTATCGC
ACGCCTGGACCGATGATGATGCATAAGACGGCGTACGTGGAGTTTCAGCC
TTTGGGTGTGCTGGGGGTGATAGCTCCATGGAATTACCCCTTCCATAATC
TGTTCAATCACGTGATTTCGGGGCTTTTTGCTGGTAACGCAGTCGTGAGC
AAGGTCTCTGAGTACACCTCCTGGTCATCCTACGGGTATTTTTCCGACAT
CATTCGAGCGGCGTTGGTCGAATGCGGGCATTCCCCCGATCTGGTAGCAG
TAGTGACTGGGTTGGGAGAAGCAGGTGCTGCCCTTGTCGCATGCCCGGAG
GTCGATAAGATTATTTTTACGGGCTCCCCGTCCGTGGGGAAGAAGGTAAT
GGAGGGGGCGGCACCGCATCTGAAGCCGGTTATCTTGGAATTGGGAGGGA
AGGACCCCATGGTGATTATGGAGGATGCGGACATCGATGCTCTGTTGCCG
ATGGCCTTGAAGGGGGCTTTTTTTAATTGTGGGCAAAATTGTTGCGGGGT
GGAGCGGTTTTATGTCTATGAGAGTGTGCACGATAAGTTTGTGGCGGAGG
TGGTGAAGAGGGTGGGAGCCTTTCGCCAAGGGCCGCCGTTGGAAGGGGCG
GAGAAAGTCGACTGTGGAGCTATGGTCATGCCACGGCAGCTCGAGATTGT
TCAGGGGCTCATCGACGAGGCGGTGGCTGAGGGCGCAAAAGTGATGGTGG
GGGGAAAGCGGCACCCGGATCACGGGCAAGGTAATTTCTTCCAGCCGACG
GTTTTGGTGGGGGTGACGAATGAGATGAAGATTGCGCAGGAGGAGGTGTT
CGGGCCGGTGATGACCATCATTAAGGTACCGAAGGACGACGATGCTATGT
GTTTGAAGATGGTGAACGAATGTAATTACGGCCTTGGGTCTTCGGTGTTT
TCCCGAGATGCCGCGCGGGCTTTGAGGTTGGGGAATGGGATCAGGGCGGG
AATGACGACGGTAAATGATTTCGGGGTGAATTACTTGGTGCAGGCGTTGC
CGTTCGGAGGAACGAAGCACAGCGGATTCGACCGATTCGCAGGTCCAGAA
GGGTTGCAGGCTTGTTGTTTGATGAAGAGTGTGGTAGTGGATCGGATTTC
ATTCGTGAAGACGTCCATTCCCGCGCAGTTGCAATACCCCGTGAGCGAGA
AGACATTCGGCTTTGGCCAGGGACTCTTGCAGTTGTTTTATGAGCCGACG
TTAGTGGGTAAAGCAAAGGCGGTGCTAAAATTGATTTAA

Synonyms

Publications