jgi.p|Nanoce1779_2|640305, mRNA_6323 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|640305
Unique NamemRNA_6323
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length306
Alignment locationscaffold_15:345782..346554 +

Link to JBrowse

Properties
Property NameValue
TranscriptId640391
TrackFilteredModels2
ProteinId640305
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:345782..346554 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|640305gene_6323Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|640305mRNA_6323-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6323CDS_6323Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6323 ID=mRNA_6323|Name=jgi.p|Nanoce1779_2|640305|organism=Nannochloropsis oceanica|type=mRNA|length=306bp
ATGTCTCCTCCTTCCGGTTTGATCGGTGGGTTTGGTGCGACCAAGGAGAC
CCCGGACGTGGAGACGACGGCCCTGCTCAGCAGCGTCAGGGGCGAGGTGG
AAAAGCAACTCTCTACGACCTTCAGCACGTTTGAGCCTCACAGCGTCCGC
ACGCAAGTGGTGGCGGGCACCAACTACCGGTGCAAAGTTCACGTTGGGGA
TTCAAAATACGTGCATATGGTGGTGCATCAACCCCTGCCTCATACCAAGG
AGCCGGCAAAGTTGATGTCCGCCGAGGGAGGCAAGACGTTGGAGGACGCC
CTCTAA
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protein sequence of jgi.p|Nanoce1779_2|640305

>mRNA_6323-protein ID=mRNA_6323-protein|Name=jgi.p|Nanoce1779_2|640305|organism=Nannochloropsis oceanica|type=polypeptide|length=102bp
MSPPSGLIGGFGATKETPDVETTALLSSVRGEVEKQLSTTFSTFEPHSVR
TQVVAGTNYRCKVHVGDSKYVHMVVHQPLPHTKEPAKLMSAEGGKTLEDA
L*
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mRNA from alignment at scaffold_15:345782..346554+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6323 ID=mRNA_6323|Name=jgi.p|Nanoce1779_2|640305|organism=Nannochloropsis oceanica|type=mRNA|length=773bp|location=Sequence derived from alignment at scaffold_15:345782..346554+ (Nannochloropsis oceanica)
ATGTCTCCTCCTTCCGGTTTGATCGGTGGGTTTGGTGCGACCAAGGAGAC
CCCGGACGTGGAGACGACGGCCCTGCTCAGCAGCGTCAGGGGCGAGGTGG
AAAAGGTACGCCGTGGAGTTTGGATGCAATACGGCACCATATGTTTTTGG
TTTATAGCAGACAAGCACATTGGGAGGATGTCATGTCATCTATGAAATTT
TCATTGTTGCGCTGATGCAAGGCTCTTTGTGTCCTCTGCTACCTTTTATT
CACCTACACCTCATAGCAACTCTCTACGACCTTCAGCACGTTTGAGCCTC
ACAGCGTCCGCACGCAAGTGGTACGTACATCCTTATGCTGAAGCAAAGTG
AGCATTGACCTCTATTTCTTGTCCTTCTCTTCATCCTCCTCCCTTCTCCA
GTATTCCTCTCTCCGTTTGTCATCCTCCTTCCTCTATTTTTTTCCTTTTC
CTTTTTTCACCCCAGGTGGCGGGCACCAACTACCGGTGCAAAGTTCACGT
TGGGGATTCAAAATACGTGCATATGGTGGTGCATCAACCCCTGCCTCATA
CCAAGGAGCCGGCAAAGGTATGTTCATGCTTTTTGGGCGACAGGGCGGGA
TGGATATAAGTGAGCACGTGCGTGTTGTCGCGGCGGGCCAGAACATTAGT
ATGAGATGATAACACGAAAATGGGCATATTGCATGATCTCACCTTCCTTC
CCTTCTCCTGTTTGTAAATCGCCCGCAGTTGATGTCCGCCGAGGGAGGCA
AGACGTTGGAGGACGCCCTCTAA
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Coding sequence (CDS) from alignment at scaffold_15:345782..346554+

>mRNA_6323 ID=mRNA_6323|Name=jgi.p|Nanoce1779_2|640305|organism=Nannochloropsis oceanica|type=CDS|length=1224bp|location=Sequence derived from alignment at scaffold_15:345782..346554+ (Nannochloropsis oceanica)
ATGTCTCCTCCTTCCGGTTTGATCGGTGGGTTTGGTGCGACCAAGGAGAC
CCCGGACGTGGAGACGACGGCCCTGCTCAGCAGCGTCAGGGGCGAGGTGG
AAAAGCAACTCTCTACGACCTTCAGCACGTTTGAGCCTCACAGCGTCCGC
ACGCAAGTGGTGGCGGGCACCAACTACCGGTGCAAAGTTCACGTTGGGGA
TTCAAAATACGTGCATATGGTGGTGCATCAACCCCTGCCTCATACCAAGG
AGCCGGCAAAGTTGATGTCCGCCGAGGGAGGCAAGACGTTGGAGGACGCC
CTCTAAATGTCTCCTCCTTCCGGTTTGATCGGTGGGTTTGGTGCGACCAA
GGAGACCCCGGACGTGGAGACGACGGCCCTGCTCAGCAGCGTCAGGGGCG
AGGTGGAAAAGCAACTCTCTACGACCTTCAGCACGTTTGAGCCTCACAGC
GTCCGCACGCAAGTGGTGGCGGGCACCAACTACCGGTGCAAAGTTCACGT
TGGGGATTCAAAATACGTGCATATGGTGGTGCATCAACCCCTGCCTCATA
CCAAGGAGCCGGCAAAGTTGATGTCCGCCGAGGGAGGCAAGACGTTGGAG
GACGCCCTCTAAATGTCTCCTCCTTCCGGTTTGATCGGTGGGTTTGGTGC
GACCAAGGAGACCCCGGACGTGGAGACGACGGCCCTGCTCAGCAGCGTCA
GGGGCGAGGTGGAAAAGCAACTCTCTACGACCTTCAGCACGTTTGAGCCT
CACAGCGTCCGCACGCAAGTGGTGGCGGGCACCAACTACCGGTGCAAAGT
TCACGTTGGGGATTCAAAATACGTGCATATGGTGGTGCATCAACCCCTGC
CTCATACCAAGGAGCCGGCAAAGTTGATGTCCGCCGAGGGAGGCAAGACG
TTGGAGGACGCCCTCTAAATGTCTCCTCCTTCCGGTTTGATCGGTGGGTT
TGGTGCGACCAAGGAGACCCCGGACGTGGAGACGACGGCCCTGCTCAGCA
GCGTCAGGGGCGAGGTGGAAAAGCAACTCTCTACGACCTTCAGCACGTTT
GAGCCTCACAGCGTCCGCACGCAAGTGGTGGCGGGCACCAACTACCGGTG
CAAAGTTCACGTTGGGGATTCAAAATACGTGCATATGGTGGTGCATCAAC
CCCTGCCTCATACCAAGGAGCCGGCAAAGTTGATGTCCGCCGAGGGAGGC
AAGACGTTGGAGGACGCCCTCTAA
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Synonyms
Publications