jgi.p|Nanoce1779_2|594583, mRNA_6321 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594583
Unique NamemRNA_6321
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1363
Alignment locationscaffold_15:340172..341610 +

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Properties
Property NameValue
TranscriptId594669
TrackFilteredModels2
ProteinId594583
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:340172..341610 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594583gene_6321Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594583mRNA_6321-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6321CDS_6321Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6321 ID=mRNA_6321|Name=jgi.p|Nanoce1779_2|594583|organism=Nannochloropsis oceanica|type=mRNA|length=1363bp
GTGGCTGCAAGGGCGCTGTGTTAGTCGTAGATGTGTTGGGGTAGGGTCGA
GATTATCATGAGAACCATCATCAAGAAGCAACGGCGGCAAGGACGAGCGC
AAAGACAGAAGCGAGACGTGTGCAACCCCTCCGCCCGCACCACGTGACGA
GAAACGTAAAGATGTACAGCCAACCTCACAAAGGGAAAGGTGCGTGCACG
TTGTTTTGTTTGTCGGTTCGGAAGCCAAGCCAGCTGGGTAGGATCTGCCC
CACCAACGTACAGCAAGGCAACGGGCAACGGGTGCGGTAGCGACATTGTC
TCAAAGCCCGTATAGGTAGCATGACTACAGTCCCACAGCTAAAACACTAG
CAAGATCTCCATTTGGACATGAATAAGACAGTTGAAGCGCCAGGTACAGC
CAGTTGTACGAGATGTAGCACAAATACCAACTCATCTGTGACCTCCTCAC
CCCTCTCATGACTCACGAATACAGCCATGTGTAAAACCGTCACACACCCT
CCGCTTCCCACTGCCACTGGTTCCACCTCCGGCCCCAACTCCACTTCTAT
CCGCGCCATGCATGCCACAGGACCCACCCAATTGACCGCCGCCGCTGCTG
CTGACCCAAAACCACTACCATCGCATGTCGTCTTCTGCCTTCCTGGCCTG
TGGGGAAATCTGGAAAATCTGGAATGTTTGGCTAAGATGATTCGTACCAT
ATGTTTTCCCTCCAGCCGTTGTTGTCAGTCGCGTCAATTCCATGGCTTTT
TCCTACCACGGGGAAGATGCGTGCGGGACGCGGCTGGCGGAGGAAGTCAA
AGCAATTGCAGCAGCCCACCCGCATGTTCGACAAGTTTCATTTGTGTGTT
ATAGTGCTGGGGGACTCTTTCGTCGGTTTGCTGTCGGAAAGCTTTGGCAT
GAGTGGCTAAAGGGAGAAGAATGGATGAAGGAAAACAAGGGCCACTGCAG
CAGCAGGAGCGATAAACTGCATTTTTGGGAGCCGTTGGCGGTTATCACTC
TGGCTACTCCCCACTATAGATGCAGAGAGGTCGACAAATCATGTTGATAT
ATACAATATATATCATGTCATGTCAAATTGCTGGGTGGGTGTAGATCAAG
TGTGATAAAGAGGGAATAGACATTTTGGAGGATGTGGCAATGCAAGTGGA
AACGGCAACTGAAAAAACGAGACTGGGAAGGAGGAAAGAAGGAGGGGCTG
GTGACAGGGGTACACAAATCTACTATTTGTGGATGATATATATCGAAATG
TACACTGAAATTGTAGAGAAATGTAAATTCAAAAGTGTTGATAAGAGCCT
ATAACACCGAATCACTGCTACTCAAGCCATAAAAGAATGAATCAGGACTG
CTTTTCATTTTTT
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protein sequence of jgi.p|Nanoce1779_2|594583

>mRNA_6321-protein ID=mRNA_6321-protein|Name=jgi.p|Nanoce1779_2|594583|organism=Nannochloropsis oceanica|type=polypeptide|length=102bp
MAFSYHGEDACGTRLAEEVKAIAAAHPHVRQVSFVCYSAGGLFRRFAVGK
LWHEWLKGEEWMKENKGHCSSRSDKLHFWEPLAVITLATPHYRCREVDKS
C*
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mRNA from alignment at scaffold_15:340172..341610+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6321 ID=mRNA_6321|Name=jgi.p|Nanoce1779_2|594583|organism=Nannochloropsis oceanica|type=mRNA|length=1439bp|location=Sequence derived from alignment at scaffold_15:340172..341610+ (Nannochloropsis oceanica)
GTGGCTGCAAGGGCGCTGTGTTAGTCGTAGATGTGTTGGGGTAGGGTCGA
GATTATCATGAGAACCATCATCAAGAAGCAACGGCGGCAAGGACGAGCGC
AAAGACAGAAGCGAGACGTGTGCAACCCCTCCGCCCGCACCACGTGACGA
GAAACGTAAAGATGTACAGCCAACCTCACAAAGGGAAAGGTGCGTGCACG
TTGTTTTGTTTGTCGGTTCGGAAGCCAAGCCAGCTGGGTAGGATCTGCCC
CACCAACGTACAGCAAGGCAACGGGCAACGGGTGCGGTAGCGACATTGTC
TCAAAGCCCGTATAGGTAGCATGACTACAGTCCCACAGCTAAAACACTAG
CAAGATCTCCATTTGGACATGAATAAGACAGTTGAAGCGCCAGGTACAGC
CAGTTGTACGAGATGTAGCACAAATACCAACTCATCTGTGACCTCCTCAC
CCCTCTCATGACTCACGAATACAGCCATGTGTAAAACCGTCACACACCCT
CCGCTTCCCACTGCCACTGGTTCCACCTCCGGCCCCAACTCCACTTCTAT
CCGCGCCATGCATGCCACAGGACCCACCCAATTGACCGCCGCCGCTGCTG
CTGACCCAAAACCACTACCATCGCATGTCGTCTTCTGCCTTCCTGGCCTG
TGGGGAAATCTGGAAAATCTGGAATGTTTGGCTAAGATGATTCGTACCAT
ATGTTTTCCCTCCAGCCGTTGTTGTCAGTCGCGTCAATTCCATGGCTTTT
TCCTACCACGGGGAAGATGCGTGCGGGACGCGGCTGGCGGAGGAAGTCAA
AGCAATTGCAGCAGCCCACCCGCATGTTCGACAAGTTTCATTTGTGTGTT
ATAGTGCTGGGGGACTCTTTCGTCGGTTTGCTGTCGGAAAGCTTTGGCAT
GAGTGGCTAAAGGGAGAAGAATGGATGAAGGAAAACAAGGGCCACTGCAG
CAGCAGGAGCGATAAACTGCATTTTTGGGAGCCGTTGGCGGTTATCACTC
TGGCTACTCCCCACTATAGATGCAGAGAGGTGGGTCATACTGCGCATGAT
CGGTGGCAAAATCGCGTCCAAGCCTCTTTCGCTAATATTCATTGCCATCG
AACAGGTCGACAAATCATGTTGATATATACAATATATATCATGTCATGTC
AAATTGCTGGGTGGGTGTAGATCAAGTGTGATAAAGAGGGAATAGACATT
TTGGAGGATGTGGCAATGCAAGTGGAAACGGCAACTGAAAAAACGAGACT
GGGAAGGAGGAAAGAAGGAGGGGCTGGTGACAGGGGTACACAAATCTACT
ATTTGTGGATGATATATATCGAAATGTACACTGAAATTGTAGAGAAATGT
AAATTCAAAAGTGTTGATAAGAGCCTATAACACCGAATCACTGCTACTCA
AGCCATAAAAGAATGAATCAGGACTGCTTTTCATTTTTT
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Coding sequence (CDS) from alignment at scaffold_15:340172..341610+

>mRNA_6321 ID=mRNA_6321|Name=jgi.p|Nanoce1779_2|594583|organism=Nannochloropsis oceanica|type=CDS|length=612bp|location=Sequence derived from alignment at scaffold_15:340172..341610+ (Nannochloropsis oceanica)
ATGGCTTTTTCCTACCACGGGGAAGATGCGTGCGGGACGCGGCTGGCGGA
GGAAGTCAAAGCAATTGCAGCAGCCCACCCGCATGTTCGACAAGTTTCAT
TTGTGTGTTATAGTGCTGGGGGACTCTTTCGTCGGTTTGCTGTCGGAAAG
CTTTGGCATGAGTGGCTAAAGGGAGAAGAATGGATGAAGGAAAACAAGGG
CCACTGCAGCAGCAGGAGCGATAAACTGCATTTTTGGGAGCCGTTGGCGG
TTATCACTCTGGCTACTCCCCACTATAGATGCAGAGAGGTCGACAAATCA
TGTTGAATGGCTTTTTCCTACCACGGGGAAGATGCGTGCGGGACGCGGCT
GGCGGAGGAAGTCAAAGCAATTGCAGCAGCCCACCCGCATGTTCGACAAG
TTTCATTTGTGTGTTATAGTGCTGGGGGACTCTTTCGTCGGTTTGCTGTC
GGAAAGCTTTGGCATGAGTGGCTAAAGGGAGAAGAATGGATGAAGGAAAA
CAAGGGCCACTGCAGCAGCAGGAGCGATAAACTGCATTTTTGGGAGCCGT
TGGCGGTTATCACTCTGGCTACTCCCCACTATAGATGCAGAGAGGTCGAC
AAATCATGTTGA
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Synonyms
Publications