jgi.p|Nanoce1779_2|594581, mRNA_6320 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594581
Unique NamemRNA_6320
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1226
Alignment locationscaffold_15:338965..340190 -

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Properties
Property NameValue
TranscriptId594667
TrackFilteredModels2
ProteinId594581
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:338965..340190 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594581gene_6320Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594581mRNA_6320-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6320CDS_6320Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6320 ID=mRNA_6320|Name=jgi.p|Nanoce1779_2|594581|organism=Nannochloropsis oceanica|type=mRNA|length=1226bp
ACAGCGCCCTTGCAGCCACCATGCAGAGCTCCCTCATGGCAACCGGCCGA
GTGGTAGCCTCGCGTCTCCGTGCCTCGGTGCCCTCGTCTGGCCATGTCCT
GACCCGCGGCCTCTCCGCCCCGCCCCAAAAGCCTCCTCCTCCGCCCTCCC
CCGAAGAGCTGCAAAAGATGGTCGCCACCTCCGAGGCGCACGTCAGCCAA
GTCCGCGCCGGGACCATGAAAACCGTGCAGCCTCATACTGTCTCCGATGT
TCCAGACCTGCCCACTTATCTCCCGGAAAACCAAGAGGAAATGGCCGTCT
TGAACGACCAACCCGCGAATCAAAGGGCCCGCAAGGTCACCATCCGCCAA
AAGGCTCAAAGCGCCATGCAATCCAGCCCCAACAAGTCCTACCCCTGGCA
CATCACTTGGGCACAGCAGGAACGCTGGTCCAATCCTTTAATGGGATGGA
CTTCAACTGCTGATCCCTTAAGTAACCAGTCACTCGCATTTGACACGGCT
GAGGAGGCGGCTCGCTTTGCGAAGCGTCAGGGGTGGGAAGTGCAGATTGA
GCCAGAAATTAGTCGCAAGCAAGTGCTGGGGACGAAGAAGTATGCCTTCA
ATTTCTTGCAGGAAGACGTGGAAAACAAATTGAAGAGGGAGGGAGTTAAG
ACGAAGCATTTTGCGAATCAAGGTTATGCGGCCTCGAATTGGTTTCAGTC
GTTGAAGTACCACGGGGATGGGGAGTGCGAACAGCATGGTCCCCCACAGA
AGAAGAAGTAAATGAGACTTACTTCGGGAAGGGGAGGGGAGGAGTGTGGT
ATTGGTCATTTATTGGAGCACCATGGGGGTAAGGAGTCCGTGCTGCATAG
ACCCCAAAGCGGTTGAAGGAAGAAGTCGATTCGTTCTTCGGGTTAAGCCG
AAGCAGCAAGAGGGACTGGAGTAATTGATGACGAAAAGAAAGAGATTAAG
GAAGCGTGGGTGTATACGGGAAGAGATGTTGGAAAAAAGAGCATTCAGAG
TTTTTGTCTGTTGGGGGGTGAGGGATTGAATAGAGGGTATAGTTGTGTAG
TCCTCTAAACGGGCTGCTTTTGGTTGCCGAGAGTCAGCTGTCTTGCATTT
CAAATGATGGGGAAGAGGGCAGAGGGAGAAGATGCGTCGTGAGGTATGGG
TCGATTTACTACTGAGGAGCAAGGAAGATGGAGAGAGTGAAGGGAAGGAA
GGAAAACGACCGTGAGGGAGCGGGAA
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protein sequence of jgi.p|Nanoce1779_2|594581

>mRNA_6320-protein ID=mRNA_6320-protein|Name=jgi.p|Nanoce1779_2|594581|organism=Nannochloropsis oceanica|type=polypeptide|length=247bp
MQSSLMATGRVVASRLRASVPSSGHVLTRGLSAPPQKPPPPPSPEELQKM
VATSEAHVSQVRAGTMKTVQPHTVSDVPDLPTYLPENQEEMAVLNDQPAN
QRARKVTIRQKAQSAMQSSPNKSYPWHITWAQQERWSNPLMGWTSTADPL
SNQSLAFDTAEEAARFAKRQGWEVQIEPEISRKQVLGTKKYAFNFLQEDV
ENKLKREGVKTKHFANQGYAASNWFQSLKYHGDGECEQHGPPQKKK*
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mRNA from alignment at scaffold_15:338965..340190-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6320 ID=mRNA_6320|Name=jgi.p|Nanoce1779_2|594581|organism=Nannochloropsis oceanica|type=mRNA|length=1226bp|location=Sequence derived from alignment at scaffold_15:338965..340190- (Nannochloropsis oceanica)
ACAGCGCCCTTGCAGCCACCATGCAGAGCTCCCTCATGGCAACCGGCCGA GTGGTAGCCTCGCGTCTCCGTGCCTCGGTGCCCTCGTCTGGCCATGTCCT GACCCGCGGCCTCTCCGCCCCGCCCCAAAAGCCTCCTCCTCCGCCCTCCC CCGAAGAGCTGCAAAAGATGGTCGCCACCTCCGAGGCGCACGTCAGCCAA GTCCGCGCCGGGACCATGAAAACCGTGCAGCCTCATACTGTCTCCGATGT TCCAGACCTGCCCACTTATCTCCCGGAAAACCAAGAGGAAATGGCCGTCT TGAACGACCAACCCGCGAATCAAAGGGCCCGCAAGGTCACCATCCGCCAA AAGGCTCAAAGCGCCATGCAATCCAGCCCCAACAAGTCCTACCCCTGGCA CATCACTTGGGCACAGCAGGAACGCTGGTCCAATCCTTTAATGGGATGGA CTTCAACTGCTGATCCCTTAAGTAACCAGTCACTCGCATTTGACACGGCT GAGGAGGCGGCTCGCTTTGCGAAGCGTCAGGGGTGGGAAGTGCAGATTGA GCCAGAAATTAGTCGCAAGCAAGTGCTGGGGACGAAGAAGTATGCCTTCA ATTTCTTGCAGGAAGACGTGGAAAACAAATTGAAGAGGGAGGGAGTTAAG ACGAAGCATTTTGCGAATCAAGGTTATGCGGCCTCGAATTGGTTTCAGTC GTTGAAGTACCACGGGGATGGGGAGTGCGAACAGCATGGTCCCCCACAGA AGAAGAAGTAAATGAGACTTACTTCGGGAAGGGGAGGGGAGGAGTGTGGT ATTGGTCATTTATTGGAGCACCATGGGGGTAAGGAGTCCGTGCTGCATAG ACCCCAAAGCGGTTGAAGGAAGAAGTCGATTCGTTCTTCGGGTTAAGCCG AAGCAGCAAGAGGGACTGGAGTAATTGATGACGAAAAGAAAGAGATTAAG GAAGCGTGGGTGTATACGGGAAGAGATGTTGGAAAAAAGAGCATTCAGAG TTTTTGTCTGTTGGGGGGTGAGGGATTGAATAGAGGGTATAGTTGTGTAG TCCTCTAAACGGGCTGCTTTTGGTTGCCGAGAGTCAGCTGTCTTGCATTT CAAATGATGGGGAAGAGGGCAGAGGGAGAAGATGCGTCGTGAGGTATGGG TCGATTTACTACTGAGGAGCAAGGAAGATGGAGAGAGTGAAGGGAAGGAA GGAAAACGACCGTGAGGGAGCGGGAA
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Coding sequence (CDS) from alignment at scaffold_15:338965..340190-

>mRNA_6320 ID=mRNA_6320|Name=jgi.p|Nanoce1779_2|594581|organism=Nannochloropsis oceanica|type=CDS|length=741bp|location=Sequence derived from alignment at scaffold_15:338965..340190- (Nannochloropsis oceanica)
ATGCAGAGCTCCCTCATGGCAACCGGCCGAGTGGTAGCCTCGCGTCTCCG
TGCCTCGGTGCCCTCGTCTGGCCATGTCCTGACCCGCGGCCTCTCCGCCC
CGCCCCAAAAGCCTCCTCCTCCGCCCTCCCCCGAAGAGCTGCAAAAGATG
GTCGCCACCTCCGAGGCGCACGTCAGCCAAGTCCGCGCCGGGACCATGAA
AACCGTGCAGCCTCATACTGTCTCCGATGTTCCAGACCTGCCCACTTATC
TCCCGGAAAACCAAGAGGAAATGGCCGTCTTGAACGACCAACCCGCGAAT
CAAAGGGCCCGCAAGGTCACCATCCGCCAAAAGGCTCAAAGCGCCATGCA
ATCCAGCCCCAACAAGTCCTACCCCTGGCACATCACTTGGGCACAGCAGG
AACGCTGGTCCAATCCTTTAATGGGATGGACTTCAACTGCTGATCCCTTA
AGTAACCAGTCACTCGCATTTGACACGGCTGAGGAGGCGGCTCGCTTTGC
GAAGCGTCAGGGGTGGGAAGTGCAGATTGAGCCAGAAATTAGTCGCAAGC
AAGTGCTGGGGACGAAGAAGTATGCCTTCAATTTCTTGCAGGAAGACGTG
GAAAACAAATTGAAGAGGGAGGGAGTTAAGACGAAGCATTTTGCGAATCA
AGGTTATGCGGCCTCGAATTGGTTTCAGTCGTTGAAGTACCACGGGGATG
GGGAGTGCGAACAGCATGGTCCCCCACAGAAGAAGAAGTAA
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Synonyms
Publications