jgi.p|Nanoce1779_2|631466, mRNA_6318 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|631466
Unique Name	mRNA_6318
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1817
Alignment location	scaffold_15:331049..333000 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	631552
Track	FilteredModels2
ProteinId	631466

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:331049..333000 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|631466	gene_6318	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|631466	mRNA_6318-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6318	CDS_6318	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:331049..333000+
coding sequence from alignment at scaffold_15:331049..333000+

mRNA sequence

>mRNA_6318 ID=mRNA_6318|Name=jgi.p|Nanoce1779_2|631466|organism=Nannochloropsis oceanica|type=mRNA|length=1817bp
TATGCTACGCAACGTCTTCGCGTGTTCGAGAATGTCTCTCTCACTCCACA
CAACACATTCACTGACAGGTTCACCGCCAGCAGCGGCAATATAGACGACG
TCTTGGTCTGTCTGCCATTTCGTGATTTCCCACCCCTTCTGGTCTAGTCG
TCGGCCTCTTCTCCGTCTCCACACCCCAGCAAGCCTCACCTCACTCGTTC
AAAGTACGCCCCACTCGTCCAACCCGCCGAAACTGAAAACCATGGACTTC
GACCGCAGCGTTTCCAAGCTCAAAAAGGAGCAGGAGAAGCGACGGGCTGA
AGCATTGCGCAAGGCGGAACGTGAACGCAAAGCTCAAGAAGAGGCCCAAA
GGCAGCACGCCCTCATCCAACAAGCCGTTGAAACCCGGCGTCGGGAACAA
CTTGAAAAGGAAGAGCACGACAGGCTCGCCGTAGAAGAAGAACGGAGGAT
CACTGCGGGCATTAACTATAGCGTGGCTCTACTTCCCTTTGAAGTTGAGG
GAGAGGGTGACAAGATCACTCTTCCACCAAGCGCCCTGGAAAGTTTGAGC
AAGCAAGACGCCCTGGCCCACGGACCGATGTTGTTTCAGCTTTTCCTGGT
CTCTCCTACATCAGCAGCAACAACAGCAGGAGCCAGAGGGGGCGGAGGAG
GAGAAAAGGCAGGGCTGCCGCCAGGGGCGAGGAAGACACATGCAGGGGTG
TTGGAATTCTCGGCAGAGGAGGGAACGGTGGGCTTACCACTCAAAGTTCG
CAAGAGCCTTTTAGGGGGCGTTGGTGGTAGTGGTGGTGGTACTGTTGCTG
GGGAAGAATTGAAGAAAGGACAGGGGGGAGGAGGAGAGGGTTTGTGGAAT
ATAGTTGGGTGTATGGTCCGTGTCAAATACATTCGGTTGGAGAAAGGCAG
GTATGCCAAGTTTCAGCCCAAGACGGGGGGGCTATCGCAAGTCCCTGAAC
TGAAGGGAATGCTGGAAATGAATTTACTGAAGCACTCCACTTTGACCAAA
GGCGATCTATTGCAGGTCTGGTACAGGGGCAAGTGCTTCGATTTAAAGGT
AACTGAGTTGGAGCCTATAGAGGCAATGGGCTTGCATGCAGTGACGGTGA
TCGATACGGATCTAACGGTTGATGTGGACGTGCCGGAGGAGCAGGTGGAG
AAGGAAAAGGAGCGAGGGACGGAGTTGGGGAGGACTTCAAGAGGCGGAGG
CCACTCTGTGGGTGAAGCGATGGGGAATGAGGTCTCACCACTACGGATGT
TGGGGGGGAGTAGCAGCATAAGTGGTCGTGGAGGAGGCGGAGGAGGCGGA
GGAGGTGGAGGAGGCGGGGGCGGAGGGAAGAAGCTGGGGGGCAGTGGGAC
AACCCCGACGAGAAATGCGACTTCAGAAGAAGGCGTGGACGAACCAGAAA
ATGCCCGTAGCGCGATAACGAGACACATGAAAATGGATGCCCTTGGGTTG
GAACCGACCGAGAGTGAAGAGGGGGTGATTAGCTTGGTGGTGCGAAAGCC
AGATGGGTCTGTGAAGAGCAGACTCTTCCGAAAGCACCAGCCTTTCCAGG
ACGTGTTTCGTTTTGTTGATGCCTTTTCTGTGTCCGACGAAAAGAGTTAC
CGCTTGGTCACTCGCTTTCCACGGCGGGTGTTTTGTGCGGTTGAGACGGT
GGGCCAGAGCGTCGAGGAGGTTTTGGGGCCAGGGACGGGGAAGAAGGAGA
TGCTCATGTACGAGGCGTGTTGAGCGGGGAAGGAGGGAAAGAGGGCATAG
CAATGTAGTGTGCATAGAGCGACGAAGGGGTAGCAGTACATATTTATTGC
GGCAAAGTAAAACAATT

protein sequence of jgi.p|Nanoce1779_2|631466

>mRNA_6318-protein ID=mRNA_6318-protein|Name=jgi.p|Nanoce1779_2|631466|organism=Nannochloropsis oceanica|type=polypeptide|length=494bp
MDFDRSVSKLKKEQEKRRAEALRKAERERKAQEEAQRQHALIQQAVETRR
REQLEKEEHDRLAVEEERRITAGINYSVALLPFEVEGEGDKITLPPSALE
SLSKQDALAHGPMLFQLFLVSPTSAATTAGARGGGGGEKAGLPPGARKTH
AGVLEFSAEEGTVGLPLKVRKSLLGGVGGSGGGTVAGEELKKGQGGGGEG
LWNIVGCMVRVKYIRLEKGRYAKFQPKTGGLSQVPELKGMLEMNLLKHST
LTKGDLLQVWYRGKCFDLKVTELEPIEAMGLHAVTVIDTDLTVDVDVPEE
QVEKEKERGTELGRTSRGGGHSVGEAMGNEVSPLRMLGGSSSISGRGGGG
GGGGGGGGGGGGKKLGGSGTTPTRNATSEEGVDEPENARSAITRHMKMDA
LGLEPTESEEGVISLVVRKPDGSVKSRLFRKHQPFQDVFRFVDAFSVSDE
KSYRLVTRFPRRVFCAVETVGQSVEEVLGPGTGKKEMLMYEAC*

mRNA from alignment at scaffold_15:331049..333000+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6318 ID=mRNA_6318|Name=jgi.p|Nanoce1779_2|631466|organism=Nannochloropsis oceanica|type=mRNA|length=1952bp|location=Sequence derived from alignment at scaffold_15:331049..333000+ (Nannochloropsis oceanica)
TATGCTACGCAACGTCTTCGCGTGTTCGAGAATGTCTCTCTCACTCCACA
CAACACATTCACTGACAGGTTCACCGCCAGCAGCGGCAATATAGACGACG
TCTTGGTCTGTCTGCCATTTCGTGATTTCCCACCCCTTCTGGTCTAGTCG
TCGGCCTCTTCTCCGTCTCCACACCCCAGCAAGCCTCACCTCACTCGTTC
AAAGTACGCCCCACTCGTCCAACCCGCCGAAACTGAAAACCATGGACTTC
GACCGCAGCGTTTCCAAGCTCAAAAAGGAGCAGGAGAAGCGACGGGCTGA
AGCATTGCGCAAGGCGGAACGGTACGTCGCTATGTGTGTATGTACGTCCT
TCCTTCTCAAGCCTCCCTAACTGTGACCTCAAGCTCTGTGCTGGTTCCGT
GAACGCACCGCATTAACTATCCTCATTCCTTATACCCCGGTCCCACATTT
CATTAGTGAACGCAAAGCTCAAGAAGAGGCCCAAAGGCAGCACGCCCTCA
TCCAACAAGCCGTTGAAACCCGGCGTCGGGAACAACTTGAAAAGGAAGAG
CACGACAGGCTCGCCGTAGAAGAAGAACGGAGGATCACTGCGGGCATTAA
CTATAGCGTGGCTCTACTTCCCTTTGAAGTTGAGGGAGAGGGTGACAAGA
TCACTCTTCCACCAAGCGCCCTGGAAAGTTTGAGCAAGCAAGACGCCCTG
GCCCACGGACCGATGTTGTTTCAGCTTTTCCTGGTCTCTCCTACATCAGC
AGCAACAACAGCAGGAGCCAGAGGGGGCGGAGGAGGAGAAAAGGCAGGGC
TGCCGCCAGGGGCGAGGAAGACACATGCAGGGGTGTTGGAATTCTCGGCA
GAGGAGGGAACGGTGGGCTTACCACTCAAAGTTCGCAAGAGCCTTTTAGG
GGGCGTTGGTGGTAGTGGTGGTGGTACTGTTGCTGGGGAAGAATTGAAGA
AAGGACAGGGGGGAGGAGGAGAGGGTTTGTGGAATATAGTTGGGTGTATG
GTCCGTGTCAAATACATTCGGTTGGAGAAAGGCAGGTATGCCAAGTTTCA
GCCCAAGACGGGGGGGCTATCGCAAGTCCCTGAACTGAAGGGAATGCTGG
AAATGAATTTACTGAAGCACTCCACTTTGACCAAAGGCGATCTATTGCAG
GTCTGGTACAGGGGCAAGTGCTTCGATTTAAAGGTAACTGAGTTGGAGCC
TATAGAGGCAATGGGCTTGCATGCAGTGACGGTGATCGATACGGATCTAA
CGGTTGATGTGGACGTGCCGGAGGAGCAGGTGGAGAAGGAAAAGGAGCGA
GGGACGGAGTTGGGGAGGACTTCAAGAGGCGGAGGCCACTCTGTGGGTGA
AGCGATGGGGAATGAGGTCTCACCACTACGGATGTTGGGGGGGAGTAGCA
GCATAAGTGGTCGTGGAGGAGGCGGAGGAGGCGGAGGAGGTGGAGGAGGC
GGGGGCGGAGGGAAGAAGCTGGGGGGCAGTGGGACAACCCCGACGAGAAA
TGCGACTTCAGAAGAAGGCGTGGACGAACCAGAAAATGCCCGTAGCGCGA
TAACGAGACACATGAAAATGGATGCCCTTGGGTTGGAACCGACCGAGAGT
GAAGAGGGGGTGATTAGCTTGGTGGTGCGAAAGCCAGATGGGTCTGTGAA
GAGCAGACTCTTCCGAAAGCACCAGCCTTTCCAGGACGTGTTTCGTTTTG
TTGATGCCTTTTCTGTGTCCGACGAAAAGAGTTACCGCTTGGTCACTCGC
TTTCCACGGCGGGTGTTTTGTGCGGTTGAGACGGTGGGCCAGAGCGTCGA
GGAGGTTTTGGGGCCAGGGACGGGGAAGAAGGAGATGCTCATGTACGAGG
CGTGTTGAGCGGGGAAGGAGGGAAAGAGGGCATAGCAATGTAGTGTGCAT
AGAGCGACGAAGGGGTAGCAGTACATATTTATTGCGGCAAAGTAAAACAA
TT

Coding sequence (CDS) from alignment at scaffold_15:331049..333000+

>mRNA_6318 ID=mRNA_6318|Name=jgi.p|Nanoce1779_2|631466|organism=Nannochloropsis oceanica|type=CDS|length=2964bp|location=Sequence derived from alignment at scaffold_15:331049..333000+ (Nannochloropsis oceanica)
ATGGACTTCGACCGCAGCGTTTCCAAGCTCAAAAAGGAGCAGGAGAAGCG
ACGGGCTGAAGCATTGCGCAAGGCGGAACGTGAACGCAAAGCTCAAGAAG
AGGCCCAAAGGCAGCACGCCCTCATCCAACAAGCCGTTGAAACCCGGCGT
CGGGAACAACTTGAAAAGGAAGAGCACGACAGGCTCGCCGTAGAAGAAGA
ACGGAGGATCACTGCGGGCATTAACTATAGCGTGGCTCTACTTCCCTTTG
AAGTTGAGGGAGAGGGTGACAAGATCACTCTTCCACCAAGCGCCCTGGAA
AGTTTGAGCAAGCAAGACGCCCTGGCCCACGGACCGATGTTGTTTCAGCT
TTTCCTGGTCTCTCCTACATCAGCAGCAACAACAGCAGGAGCCAGAGGGG
GCGGAGGAGGAGAAAAGGCAGGGCTGCCGCCAGGGGCGAGGAAGACACAT
GCAGGGGTGTTGGAATTCTCGGCAGAGGAGGGAACGGTGGGCTTACCACT
CAAAGTTCGCAAGAGCCTTTTAGGGGGCGTTGGTGGTAGTGGTGGTGGTA
CTGTTGCTGGGGAAGAATTGAAGAAAGGACAGGGGGGAGGAGGAGAGGGT
TTGTGGAATATAGTTGGGTGTATGGTCCGTGTCAAATACATTCGGTTGGA
GAAAGGCAGGTATGCCAAGTTTCAGCCCAAGACGGGGGGGCTATCGCAAG
TCCCTGAACTGAAGGGAATGCTGGAAATGAATTTACTGAAGCACTCCACT
TTGACCAAAGGCGATCTATTGCAGGTCTGGTACAGGGGCAAGTGCTTCGA
TTTAAAGGTAACTGAGTTGGAGCCTATAGAGGCAATGGGCTTGCATGCAG
TGACGGTGATCGATACGGATCTAACGGTTGATGTGGACGTGCCGGAGGAG
CAGGTGGAGAAGGAAAAGGAGCGAGGGACGGAGTTGGGGAGGACTTCAAG
AGGCGGAGGCCACTCTGTGGGTGAAGCGATGGGGAATGAGGTCTCACCAC
TACGGATGTTGGGGGGGAGTAGCAGCATAAGTGGTCGTGGAGGAGGCGGA
GGAGGCGGAGGAGGTGGAGGAGGCGGGGGCGGAGGGAAGAAGCTGGGGGG
CAGTGGGACAACCCCGACGAGAAATGCGACTTCAGAAGAAGGCGTGGACG
AACCAGAAAATGCCCGTAGCGCGATAACGAGACACATGAAAATGGATGCC
CTTGGGTTGGAACCGACCGAGAGTGAAGAGGGGGTGATTAGCTTGGTGGT
GCGAAAGCCAGATGGGTCTGTGAAGAGCAGACTCTTCCGAAAGCACCAGC
CTTTCCAGGACGTGTTTCGTTTTGTTGATGCCTTTTCTGTGTCCGACGAA
AAGAGTTACCGCTTGGTCACTCGCTTTCCACGGCGGGTGTTTTGTGCGGT
TGAGACGGTGGGCCAGAGCGTCGAGGAGGTTTTGGGGCCAGGGACGGGGA
AGAAGGAGATGCTCATGTACGAGGCGTGTTGAATGGACTTCGACCGCAGC
GTTTCCAAGCTCAAAAAGGAGCAGGAGAAGCGACGGGCTGAAGCATTGCG
CAAGGCGGAACGTGAACGCAAAGCTCAAGAAGAGGCCCAAAGGCAGCACG
CCCTCATCCAACAAGCCGTTGAAACCCGGCGTCGGGAACAACTTGAAAAG
GAAGAGCACGACAGGCTCGCCGTAGAAGAAGAACGGAGGATCACTGCGGG
CATTAACTATAGCGTGGCTCTACTTCCCTTTGAAGTTGAGGGAGAGGGTG
ACAAGATCACTCTTCCACCAAGCGCCCTGGAAAGTTTGAGCAAGCAAGAC
GCCCTGGCCCACGGACCGATGTTGTTTCAGCTTTTCCTGGTCTCTCCTAC
ATCAGCAGCAACAACAGCAGGAGCCAGAGGGGGCGGAGGAGGAGAAAAGG
CAGGGCTGCCGCCAGGGGCGAGGAAGACACATGCAGGGGTGTTGGAATTC
TCGGCAGAGGAGGGAACGGTGGGCTTACCACTCAAAGTTCGCAAGAGCCT
TTTAGGGGGCGTTGGTGGTAGTGGTGGTGGTACTGTTGCTGGGGAAGAAT
TGAAGAAAGGACAGGGGGGAGGAGGAGAGGGTTTGTGGAATATAGTTGGG
TGTATGGTCCGTGTCAAATACATTCGGTTGGAGAAAGGCAGGTATGCCAA
GTTTCAGCCCAAGACGGGGGGGCTATCGCAAGTCCCTGAACTGAAGGGAA
TGCTGGAAATGAATTTACTGAAGCACTCCACTTTGACCAAAGGCGATCTA
TTGCAGGTCTGGTACAGGGGCAAGTGCTTCGATTTAAAGGTAACTGAGTT
GGAGCCTATAGAGGCAATGGGCTTGCATGCAGTGACGGTGATCGATACGG
ATCTAACGGTTGATGTGGACGTGCCGGAGGAGCAGGTGGAGAAGGAAAAG
GAGCGAGGGACGGAGTTGGGGAGGACTTCAAGAGGCGGAGGCCACTCTGT
GGGTGAAGCGATGGGGAATGAGGTCTCACCACTACGGATGTTGGGGGGGA
GTAGCAGCATAAGTGGTCGTGGAGGAGGCGGAGGAGGCGGAGGAGGTGGA
GGAGGCGGGGGCGGAGGGAAGAAGCTGGGGGGCAGTGGGACAACCCCGAC
GAGAAATGCGACTTCAGAAGAAGGCGTGGACGAACCAGAAAATGCCCGTA
GCGCGATAACGAGACACATGAAAATGGATGCCCTTGGGTTGGAACCGACC
GAGAGTGAAGAGGGGGTGATTAGCTTGGTGGTGCGAAAGCCAGATGGGTC
TGTGAAGAGCAGACTCTTCCGAAAGCACCAGCCTTTCCAGGACGTGTTTC
GTTTTGTTGATGCCTTTTCTGTGTCCGACGAAAAGAGTTACCGCTTGGTC
ACTCGCTTTCCACGGCGGGTGTTTTGTGCGGTTGAGACGGTGGGCCAGAG
CGTCGAGGAGGTTTTGGGGCCAGGGACGGGGAAGAAGGAGATGCTCATGT
ACGAGGCGTGTTGA

Synonyms

Publications