jgi.p|Nanoce1779_2|594569, mRNA_6317 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594569
Unique NamemRNA_6317
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length661
Alignment locationscaffold_15:329778..330813 -

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Properties
Property NameValue
TranscriptId594655
TrackFilteredModels2
ProteinId594569
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:329778..330813 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594569gene_6317Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594569mRNA_6317-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6317CDS_6317Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6317 ID=mRNA_6317|Name=jgi.p|Nanoce1779_2|594569|organism=Nannochloropsis oceanica|type=mRNA|length=661bp
CAGCACTATGGGCTTGCTTTCCATACTCAAGAAGGTGAAGCAAAAGGAGA
AAGAGATGCGTCTGCTCATCCTGGGTCTGGACAACGCCGGCAAGACGACA
ATACTTAAGAAATTTAACGGTGAGGAAATCAGCACCATCGAGCCAACTTT
GGGCTTTAACATCAAGACCCTCGAATGTCAAGGATATGTCCTCAACGTGT
GGGACGTCGGAGGACAACAAACCATTCGCTCGTACTGGCGCAATTACTTT
GAAGCGACTGATGGCTTGGTCTGGGTGGTGGATAGTGCCGATCGCCGTCG
ACTAGAAATATGTAAGATGGAGCTGCATGCGTTGTTACATCAAGAGAAGC
TCGCAGGGGCTTCACTTTTGATATTGGCTAATAAGCAGGATTTACATGGG
GCCTTGGCGGTGGGGGAGATTGCGCATGCCTTGGGTTTGGAAAGTGAGGC
GTTCACGAAAGGGCGGCATTGGACGATTGTGGGGTGTAGTGCTGTGACAG
GTCAAGGACTTGAGGATGGAATTGGATGGATGGTGACAGACATTGCCAGC
CGGATATTTATGCTCGCATAGAAAGATGGAAAAAGTAGGGGGAGAAACTC
AAAATGTCGCTAAAAAAAATGTTGTAAATTTGGTATAATTAATTTAACGG
TTGTCGTTTCT
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protein sequence of jgi.p|Nanoce1779_2|594569

>mRNA_6317-protein ID=mRNA_6317-protein|Name=jgi.p|Nanoce1779_2|594569|organism=Nannochloropsis oceanica|type=polypeptide|length=188bp
MGLLSILKKVKQKEKEMRLLILGLDNAGKTTILKKFNGEEISTIEPTLGF
NIKTLECQGYVLNVWDVGGQQTIRSYWRNYFEATDGLVWVVDSADRRRLE
ICKMELHALLHQEKLAGASLLILANKQDLHGALAVGEIAHALGLESEAFT
KGRHWTIVGCSAVTGQGLEDGIGWMVTDIASRIFMLA*
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mRNA from alignment at scaffold_15:329778..330813-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6317 ID=mRNA_6317|Name=jgi.p|Nanoce1779_2|594569|organism=Nannochloropsis oceanica|type=mRNA|length=1036bp|location=Sequence derived from alignment at scaffold_15:329778..330813- (Nannochloropsis oceanica)
CAGCACTATGGGCTTGCTTTCCATACTCAAGGTACGTGAGGTGGATGTGT
ACTTCAAAGTACTTATGTCCACAGGCTCGTGTCACAGCCCCGCCATCTCC
TGCTTCTCACGCCTTTCCCTCCCACTTTTTACTCCTCCCGTTCCATCCCA
CCACTGCAGAAGGTGAAGCAAAAGGAGAAAGAGATGCGTCTGCTCATCCT
GGGTCTGGACAACGCCGGCAAGACGACAATACTTAAGGTGAGAACGGCCA
GGGAAGGGATGCGAGTGCGGGGAGGTGGAGGACATGAGAAATCGGGAAGT
AGAGGATCATGGAAAGTGTGACTGGCATGTCTGCCCATCTAGACCAGCGA
AATAGCCACCAAGTTTGTCATGTCCTTAAATTTCTCAAACTCTTTTTTTT
CCTCATCAGCAGGACACACCCCTAACCCCTTTTTTCCTTTTCCCCTCGCC
TCCTTCCCCTCGTCTCCTCTTCTCCCCACCCTAGAAATTTAACGGTGAGG
AAATCAGCACCATCGAGCCAACTTTGGGCTTTAACATCAAGACCCTCGAA
TGTCAAGGATATGTCCTCAACGTGTGGGACGTCGGAGGACAACAAACCAT
TCGCTCGTACTGGCGCAATTACTTTGAAGCGACTGATGGCTTGGTCTGGG
TGGTGGATAGTGCCGATCGCCGTCGACTAGAAATATGTAAGATGGAGCTG
CATGCGTTGTTACATCAAGAGAAGCTCGCAGGGGCTTCACTTTTGATATT
GGCTAATAAGCAGGATTTACATGGGGCCTTGGCGGTGGGGGAGATTGCGC
ATGCCTTGGGTTTGGAAAGTGAGGCGTTCACGAAAGGGCGGCATTGGACG
ATTGTGGGGTGTAGTGCTGTGACAGGTCAAGGACTTGAGGATGGAATTGG
ATGGATGGTGACAGACATTGCCAGCCGGATATTTATGCTCGCATAGAAAG
ATGGAAAAAGTAGGGGGAGAAACTCAAAATGTCGCTAAAAAAAATGTTGT
AAATTTGGTATAATTAATTTAACGGTTGTCGTTTCT
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Coding sequence (CDS) from alignment at scaffold_15:329778..330813-

>mRNA_6317 ID=mRNA_6317|Name=jgi.p|Nanoce1779_2|594569|organism=Nannochloropsis oceanica|type=CDS|length=1692bp|location=Sequence derived from alignment at scaffold_15:329778..330813- (Nannochloropsis oceanica)
AAATTTAACGGTGAGGAAATCAGCACCATCGAGCCAACTTTGGGCTTTAA
CATCAAGACCCTCGAATGTCAAGGATATGTCCTCAACGTGTGGGACGTCG
GAGGACAACAAACCATTCGCTCGTACTGGCGCAATTACTTTGAAGCGACT
GATGGCTTGGTCTGGGTGGTGGATAGTGCCGATCGCCGTCGACTAGAAAT
ATGTAAGATGGAGCTGCATGCGTTGTTACATCAAGAGAAGCTCGCAGGGG
CTTCACTTTTGATATTGGCTAATAAGCAGGATTTACATGGGGCCTTGGCG
GTGGGGGAGATTGCGCATGCCTTGGGTTTGGAAAGTGAGGCGTTCACGAA
AGGGCGGCATTGGACGATTGTGGGGTGTAGTGCTGTGACAGGTCAAGGAC
TTGAGGATGGAATTGGATGGATGGTGACAGACATTGCCAGCCGGATATTT
ATGCTCGCATAGAAGGTGAAGCAAAAGGAGAAAGAGATGCGTCTGCTCAT
CCTGGGTCTGGACAACGCCGGCAAGACGACAATACTTAAGATGGGCTTGC
TTTCCATACTCAAGAAATTTAACGGTGAGGAAATCAGCACCATCGAGCCA
ACTTTGGGCTTTAACATCAAGACCCTCGAATGTCAAGGATATGTCCTCAA
CGTGTGGGACGTCGGAGGACAACAAACCATTCGCTCGTACTGGCGCAATT
ACTTTGAAGCGACTGATGGCTTGGTCTGGGTGGTGGATAGTGCCGATCGC
CGTCGACTAGAAATATGTAAGATGGAGCTGCATGCGTTGTTACATCAAGA
GAAGCTCGCAGGGGCTTCACTTTTGATATTGGCTAATAAGCAGGATTTAC
ATGGGGCCTTGGCGGTGGGGGAGATTGCGCATGCCTTGGGTTTGGAAAGT
GAGGCGTTCACGAAAGGGCGGCATTGGACGATTGTGGGGTGTAGTGCTGT
GACAGGTCAAGGACTTGAGGATGGAATTGGATGGATGGTGACAGACATTG
CCAGCCGGATATTTATGCTCGCATAGAAGGTGAAGCAAAAGGAGAAAGAG
ATGCGTCTGCTCATCCTGGGTCTGGACAACGCCGGCAAGACGACAATACT
TAAGATGGGCTTGCTTTCCATACTCAAGAAATTTAACGGTGAGGAAATCA
GCACCATCGAGCCAACTTTGGGCTTTAACATCAAGACCCTCGAATGTCAA
GGATATGTCCTCAACGTGTGGGACGTCGGAGGACAACAAACCATTCGCTC
GTACTGGCGCAATTACTTTGAAGCGACTGATGGCTTGGTCTGGGTGGTGG
ATAGTGCCGATCGCCGTCGACTAGAAATATGTAAGATGGAGCTGCATGCG
TTGTTACATCAAGAGAAGCTCGCAGGGGCTTCACTTTTGATATTGGCTAA
TAAGCAGGATTTACATGGGGCCTTGGCGGTGGGGGAGATTGCGCATGCCT
TGGGTTTGGAAAGTGAGGCGTTCACGAAAGGGCGGCATTGGACGATTGTG
GGGTGTAGTGCTGTGACAGGTCAAGGACTTGAGGATGGAATTGGATGGAT
GGTGACAGACATTGCCAGCCGGATATTTATGCTCGCATAGAAGGTGAAGC
AAAAGGAGAAAGAGATGCGTCTGCTCATCCTGGGTCTGGACAACGCCGGC
AAGACGACAATACTTAAGATGGGCTTGCTTTCCATACTCAAG
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Synonyms
Publications