jgi.p|Nanoce1779_2|649856, mRNA_6316 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|649856
Unique Name	mRNA_6316
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2109
Alignment location	scaffold_15:327540..329648 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	649942
Track	FilteredModels2
ProteinId	649856

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:327540..329648 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|649856	gene_6316	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|649856	mRNA_6316-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6316	CDS_6316	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:327540..329648+
coding sequence from alignment at scaffold_15:327540..329648+

mRNA sequence

>mRNA_6316 ID=mRNA_6316|Name=jgi.p|Nanoce1779_2|649856|organism=Nannochloropsis oceanica|type=mRNA|length=2109bp
ATGGCCGTTTCTTCTACCGCCACCAAAGCCTCGCCCTTGATTTTGGAAGG
CATGATGGGCTTCAATGGCCGAGTGCACAATGGTCTGCACTACACACCTC
AAGGCACTCACACAGTCTATCCTTTGGGGTCTATGGTCATTGTTCAAAAT
TTGATAACGGACCAGCAATGTTTTTTGCAGGGCCACACGGGCATTTCTGT
GAGTGCCCTGGCCATTTCGCAGGACGGCAGGCGCCTGGCCACGGGTGAGC
AAGGCGTCACTCCTGGAAGTAAGGCTGAAATCTGCGTTTGGGATTTGGAA
GGTGCCCAGGCCCTGGCTGGGGATGTCCCGTCTTCTCCCGATGACGAGAC
CAAAAACCGTCTCCACACAGATCGCCTTATTATTTTTCGCCTTCGGCAGC
ACCTGGGAAAAGTACAAGCCCTCGATTTTTCATGCGATGGTTCCTATTTG
GGAAGCGTGGGAGGCCAGGACGACAATACGGTGATTGTGTGGGACTTGCG
GGATCTGCGACCGGTGCCGGCGCAACAGGAAGCTCGACGGTCCTCTTCCT
CCTCCACTACGATGCCTTCTATGTGCGCCTGGTCCCGCGTCGTGTGCGCC
GCCCGAGGTTCGGACGATATGACACTATGCTTACAATGGTTGCACGGTCG
TAACGATCGTTTTGTAACCGGAGGCTATTTTTCGTTGCGTGTCTGGCAAG
TGGATGTGGAGACGCCCAAGATGCATTACATGGAGGCCGCGATGGGAACT
TTGCGTCGACAGTACAGCTGCTTGGCCATCTCCCCCAACGACAAGCTCTG
CTATTGTGGGACTCATACGGGTGATTTGGTGCGCGTCCGTATCGATCGTG
ACCCCATCCCGTGCTCCTACAACGAGCCTGATATGGTCCGACCCATTCTG
GACGTCGTTTCGATCATTAAGTTCCAAAGGGGGATTAAGGCGCTGGCCTG
CTTCACAAATCCGGGCACGGGTAACATGAATGTCCTCGTTGGTGCAGGAG
ATGGGAAAGTCGCCGTGATGGCACCGGGTACCCTTAAAGTGGTGGCCGGC
AAGTCCGCACAACTACTTGGTGGTGTCACATCATTGGCGGTGGCACCGGA
CGGAGCAGGTTTTTTGGCTGCGACAGACCAGTCGAATCGGTTTTATCTTA
CATTCCGGGACTTTGTACCGGGGCTGAGAGGTACTTGTCATTATGCTCCC
ATCAACCGCTTGGTCTTTCCGGCGCACTGTTCCGAACTTATTTTGACGTG
CTCGATGAACGACATCAGAGTGTGGAATGTTGCGTTGCGACAGGAATTGC
TTCGGATCCAAGTTCCTAATTTGGAAGCCAAGACTGTGGCTATTACGCCC
AAAGGCAGCACCATCTTGAGCGGATGGAGCGATGGCAAGGTGCGCGCATT
TTACCCCGAGAGTGGCAAGCTCAAGTTTGTCATCAACAATGCCCACACAG
AGGGCGCGGTGACTGCATTGGCTGTGTGCCATGACGCTGACGAGGCTTCC
CCACCCTGGAGGGTGGTAACGGGGGGGGAAGACGGGCGCGTACGATTGTG
GCACATGGCTTCCGCGCAGCAGACTATGGCTTTCTCGGCAAAGGATCACA
GAGCGGCCGTGACATCTCTTAACATTACGCGCGATAACCGTCAGTGCGTG
AGTGCCTCAGCCGACGGCTCTTGTATTGTCTGGAATCTGCTCGCGCAGAC
GCGGTTGGTTGCTGTTTTCGAACCCACCCTGTACGAAGCGGCGCTGTTCC
ACCCCGACAATTCCCAGCTCTTGACTTGCGGGACTAATCATCACATTACG
TATTACAACGCTTACGACGGCTCTTCCATTAGAGTGCTTGAAGGAGGAGA
GGATGCAGTCGTGGCCTTGGACATTGTGGCAGGCGGGGAAGTCTTCGTCT
CAGGAGGCGCGGATAAATTGGTGAAAGTTTGGGCTTACGATGAAGGGGTG
GTGCTTCGCACAGGCCACGGGCACAGTGGGCCTGTCCAGGATGTGAAGGT
CAGCCCGGACGAGCGTCGCGTGGTATCAGTGGGGAAGGAAGGAGGAATTT
TCATTTGGCGTTTGGCGGGGAACGCCGGGACGGAGGTCGCCATATCCGGG
GCAGTGTAG

protein sequence of jgi.p|Nanoce1779_2|649856

>mRNA_6316-protein ID=mRNA_6316-protein|Name=jgi.p|Nanoce1779_2|649856|organism=Nannochloropsis oceanica|type=polypeptide|length=703bp
MAVSSTATKASPLILEGMMGFNGRVHNGLHYTPQGTHTVYPLGSMVIVQN
LITDQQCFLQGHTGISVSALAISQDGRRLATGEQGVTPGSKAEICVWDLE
GAQALAGDVPSSPDDETKNRLHTDRLIIFRLRQHLGKVQALDFSCDGSYL
GSVGGQDDNTVIVWDLRDLRPVPAQQEARRSSSSSTTMPSMCAWSRVVCA
ARGSDDMTLCLQWLHGRNDRFVTGGYFSLRVWQVDVETPKMHYMEAAMGT
LRRQYSCLAISPNDKLCYCGTHTGDLVRVRIDRDPIPCSYNEPDMVRPIL
DVVSIIKFQRGIKALACFTNPGTGNMNVLVGAGDGKVAVMAPGTLKVVAG
KSAQLLGGVTSLAVAPDGAGFLAATDQSNRFYLTFRDFVPGLRGTCHYAP
INRLVFPAHCSELILTCSMNDIRVWNVALRQELLRIQVPNLEAKTVAITP
KGSTILSGWSDGKVRAFYPESGKLKFVINNAHTEGAVTALAVCHDADEAS
PPWRVVTGGEDGRVRLWHMASAQQTMAFSAKDHRAAVTSLNITRDNRQCV
SASADGSCIVWNLLAQTRLVAVFEPTLYEAALFHPDNSQLLTCGTNHHIT
YYNAYDGSSIRVLEGGEDAVVALDIVAGGEVFVSGGADKLVKVWAYDEGV
VLRTGHGHSGPVQDVKVSPDERRVVSVGKEGGIFIWRLAGNAGTEVAISG
AV*

mRNA from alignment at scaffold_15:327540..329648+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6316 ID=mRNA_6316|Name=jgi.p|Nanoce1779_2|649856|organism=Nannochloropsis oceanica|type=mRNA|length=2109bp|location=Sequence derived from alignment at scaffold_15:327540..329648+ (Nannochloropsis oceanica)
ATGGCCGTTTCTTCTACCGCCACCAAAGCCTCGCCCTTGATTTTGGAAGG
CATGATGGGCTTCAATGGCCGAGTGCACAATGGTCTGCACTACACACCTC
AAGGCACTCACACAGTCTATCCTTTGGGGTCTATGGTCATTGTTCAAAAT
TTGATAACGGACCAGCAATGTTTTTTGCAGGGCCACACGGGCATTTCTGT
GAGTGCCCTGGCCATTTCGCAGGACGGCAGGCGCCTGGCCACGGGTGAGC
AAGGCGTCACTCCTGGAAGTAAGGCTGAAATCTGCGTTTGGGATTTGGAA
GGTGCCCAGGCCCTGGCTGGGGATGTCCCGTCTTCTCCCGATGACGAGAC
CAAAAACCGTCTCCACACAGATCGCCTTATTATTTTTCGCCTTCGGCAGC
ACCTGGGAAAAGTACAAGCCCTCGATTTTTCATGCGATGGTTCCTATTTG
GGAAGCGTGGGAGGCCAGGACGACAATACGGTGATTGTGTGGGACTTGCG
GGATCTGCGACCGGTGCCGGCGCAACAGGAAGCTCGACGGTCCTCTTCCT
CCTCCACTACGATGCCTTCTATGTGCGCCTGGTCCCGCGTCGTGTGCGCC
GCCCGAGGTTCGGACGATATGACACTATGCTTACAATGGTTGCACGGTCG
TAACGATCGTTTTGTAACCGGAGGCTATTTTTCGTTGCGTGTCTGGCAAG
TGGATGTGGAGACGCCCAAGATGCATTACATGGAGGCCGCGATGGGAACT
TTGCGTCGACAGTACAGCTGCTTGGCCATCTCCCCCAACGACAAGCTCTG
CTATTGTGGGACTCATACGGGTGATTTGGTGCGCGTCCGTATCGATCGTG
ACCCCATCCCGTGCTCCTACAACGAGCCTGATATGGTCCGACCCATTCTG
GACGTCGTTTCGATCATTAAGTTCCAAAGGGGGATTAAGGCGCTGGCCTG
CTTCACAAATCCGGGCACGGGTAACATGAATGTCCTCGTTGGTGCAGGAG
ATGGGAAAGTCGCCGTGATGGCACCGGGTACCCTTAAAGTGGTGGCCGGC
AAGTCCGCACAACTACTTGGTGGTGTCACATCATTGGCGGTGGCACCGGA
CGGAGCAGGTTTTTTGGCTGCGACAGACCAGTCGAATCGGTTTTATCTTA
CATTCCGGGACTTTGTACCGGGGCTGAGAGGTACTTGTCATTATGCTCCC
ATCAACCGCTTGGTCTTTCCGGCGCACTGTTCCGAACTTATTTTGACGTG
CTCGATGAACGACATCAGAGTGTGGAATGTTGCGTTGCGACAGGAATTGC
TTCGGATCCAAGTTCCTAATTTGGAAGCCAAGACTGTGGCTATTACGCCC
AAAGGCAGCACCATCTTGAGCGGATGGAGCGATGGCAAGGTGCGCGCATT
TTACCCCGAGAGTGGCAAGCTCAAGTTTGTCATCAACAATGCCCACACAG
AGGGCGCGGTGACTGCATTGGCTGTGTGCCATGACGCTGACGAGGCTTCC
CCACCCTGGAGGGTGGTAACGGGGGGGGAAGACGGGCGCGTACGATTGTG
GCACATGGCTTCCGCGCAGCAGACTATGGCTTTCTCGGCAAAGGATCACA
GAGCGGCCGTGACATCTCTTAACATTACGCGCGATAACCGTCAGTGCGTG
AGTGCCTCAGCCGACGGCTCTTGTATTGTCTGGAATCTGCTCGCGCAGAC
GCGGTTGGTTGCTGTTTTCGAACCCACCCTGTACGAAGCGGCGCTGTTCC
ACCCCGACAATTCCCAGCTCTTGACTTGCGGGACTAATCATCACATTACG
TATTACAACGCTTACGACGGCTCTTCCATTAGAGTGCTTGAAGGAGGAGA
GGATGCAGTCGTGGCCTTGGACATTGTGGCAGGCGGGGAAGTCTTCGTCT
CAGGAGGCGCGGATAAATTGGTGAAAGTTTGGGCTTACGATGAAGGGGTG
GTGCTTCGCACAGGCCACGGGCACAGTGGGCCTGTCCAGGATGTGAAGGT
CAGCCCGGACGAGCGTCGCGTGGTATCAGTGGGGAAGGAAGGAGGAATTT
TCATTTGGCGTTTGGCGGGGAACGCCGGGACGGAGGTCGCCATATCCGGG
GCAGTGTAG

Coding sequence (CDS) from alignment at scaffold_15:327540..329648+

>mRNA_6316 ID=mRNA_6316|Name=jgi.p|Nanoce1779_2|649856|organism=Nannochloropsis oceanica|type=CDS|length=2109bp|location=Sequence derived from alignment at scaffold_15:327540..329648+ (Nannochloropsis oceanica)
ATGGCCGTTTCTTCTACCGCCACCAAAGCCTCGCCCTTGATTTTGGAAGG
CATGATGGGCTTCAATGGCCGAGTGCACAATGGTCTGCACTACACACCTC
AAGGCACTCACACAGTCTATCCTTTGGGGTCTATGGTCATTGTTCAAAAT
TTGATAACGGACCAGCAATGTTTTTTGCAGGGCCACACGGGCATTTCTGT
GAGTGCCCTGGCCATTTCGCAGGACGGCAGGCGCCTGGCCACGGGTGAGC
AAGGCGTCACTCCTGGAAGTAAGGCTGAAATCTGCGTTTGGGATTTGGAA
GGTGCCCAGGCCCTGGCTGGGGATGTCCCGTCTTCTCCCGATGACGAGAC
CAAAAACCGTCTCCACACAGATCGCCTTATTATTTTTCGCCTTCGGCAGC
ACCTGGGAAAAGTACAAGCCCTCGATTTTTCATGCGATGGTTCCTATTTG
GGAAGCGTGGGAGGCCAGGACGACAATACGGTGATTGTGTGGGACTTGCG
GGATCTGCGACCGGTGCCGGCGCAACAGGAAGCTCGACGGTCCTCTTCCT
CCTCCACTACGATGCCTTCTATGTGCGCCTGGTCCCGCGTCGTGTGCGCC
GCCCGAGGTTCGGACGATATGACACTATGCTTACAATGGTTGCACGGTCG
TAACGATCGTTTTGTAACCGGAGGCTATTTTTCGTTGCGTGTCTGGCAAG
TGGATGTGGAGACGCCCAAGATGCATTACATGGAGGCCGCGATGGGAACT
TTGCGTCGACAGTACAGCTGCTTGGCCATCTCCCCCAACGACAAGCTCTG
CTATTGTGGGACTCATACGGGTGATTTGGTGCGCGTCCGTATCGATCGTG
ACCCCATCCCGTGCTCCTACAACGAGCCTGATATGGTCCGACCCATTCTG
GACGTCGTTTCGATCATTAAGTTCCAAAGGGGGATTAAGGCGCTGGCCTG
CTTCACAAATCCGGGCACGGGTAACATGAATGTCCTCGTTGGTGCAGGAG
ATGGGAAAGTCGCCGTGATGGCACCGGGTACCCTTAAAGTGGTGGCCGGC
AAGTCCGCACAACTACTTGGTGGTGTCACATCATTGGCGGTGGCACCGGA
CGGAGCAGGTTTTTTGGCTGCGACAGACCAGTCGAATCGGTTTTATCTTA
CATTCCGGGACTTTGTACCGGGGCTGAGAGGTACTTGTCATTATGCTCCC
ATCAACCGCTTGGTCTTTCCGGCGCACTGTTCCGAACTTATTTTGACGTG
CTCGATGAACGACATCAGAGTGTGGAATGTTGCGTTGCGACAGGAATTGC
TTCGGATCCAAGTTCCTAATTTGGAAGCCAAGACTGTGGCTATTACGCCC
AAAGGCAGCACCATCTTGAGCGGATGGAGCGATGGCAAGGTGCGCGCATT
TTACCCCGAGAGTGGCAAGCTCAAGTTTGTCATCAACAATGCCCACACAG
AGGGCGCGGTGACTGCATTGGCTGTGTGCCATGACGCTGACGAGGCTTCC
CCACCCTGGAGGGTGGTAACGGGGGGGGAAGACGGGCGCGTACGATTGTG
GCACATGGCTTCCGCGCAGCAGACTATGGCTTTCTCGGCAAAGGATCACA
GAGCGGCCGTGACATCTCTTAACATTACGCGCGATAACCGTCAGTGCGTG
AGTGCCTCAGCCGACGGCTCTTGTATTGTCTGGAATCTGCTCGCGCAGAC
GCGGTTGGTTGCTGTTTTCGAACCCACCCTGTACGAAGCGGCGCTGTTCC
ACCCCGACAATTCCCAGCTCTTGACTTGCGGGACTAATCATCACATTACG
TATTACAACGCTTACGACGGCTCTTCCATTAGAGTGCTTGAAGGAGGAGA
GGATGCAGTCGTGGCCTTGGACATTGTGGCAGGCGGGGAAGTCTTCGTCT
CAGGAGGCGCGGATAAATTGGTGAAAGTTTGGGCTTACGATGAAGGGGTG
GTGCTTCGCACAGGCCACGGGCACAGTGGGCCTGTCCAGGATGTGAAGGT
CAGCCCGGACGAGCGTCGCGTGGTATCAGTGGGGAAGGAAGGAGGAATTT
TCATTTGGCGTTTGGCGGGGAACGCCGGGACGGAGGTCGCCATATCCGGG
GCAGTGTAG

Synonyms

Publications