jgi.p|Nanoce1779_2|594563, mRNA_6315 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594563
Unique NamemRNA_6315
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length920
Alignment locationscaffold_15:325513..326957 +

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Properties
Property NameValue
TranscriptId594649
TrackFilteredModels2
ProteinId594563
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:325513..326957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594563gene_6315Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594563mRNA_6315-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6315CDS_6315Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6315 ID=mRNA_6315|Name=jgi.p|Nanoce1779_2|594563|organism=Nannochloropsis oceanica|type=mRNA|length=920bp
AGCACACGCAGGCGTTACCCTTCTCCGTATACTCCGTCGAGGGGTCGTCG
CTTCCTTGAGCAGGCATCACCACCATCATCGACACCTCACCCTCCAACCC
GCCGCAAGCATGTCCCAGAATGGAGCCAAGAACGAGGAGGATAAAAGAGG
AGACAACGCGGACACCAAGAATCCCTTCACTCGCTATTACGCCCAGCTCC
TCCACCAGCAAAACATGATGCAAGACACGGTTCGTACGGGAACCTACCAA
AACGCTTTCCTGACTCACAAGATTGATTTTCAGGATAAGGTCGTGCTGGA
CGTTGGCACAGGTTCAGGTATTCTGGCATTTTTTGCCGTGCAAGCAGGGG
CTCGGCTGGTGTATGCGGCCGAGGCGAGCGGGATGGCGAAGCATGCCGAG
ACGCTTGTAAAAAGGAACGGGATGGAGGGCAAGATTATCGTGGTCAACAA
AGTCGTGGAAGAAATGGAATTACCGGAGAAGGTTGATATTATCGTCTCAG
AGCCGATTGGCTTTATGTTGGTGCATGAGAGAATGATCGAGACGTACCTC
GTGGCACGGGACAAATGGCTCAAGCCCGGGGGGCTCATGTTCCCGAATGC
AGGGGAGATTGTCATGTGCCCCTTCACGGACGAAAATTTGTACAATGAGC
AATTGGCCAAAACATCGTTTTGGTCGTCATCCACTGATTTCTATGGCATG
GACTTGACGAGTCTGACGGAAGCGGCCCTGGCTGAATTCTTCGCGCAGCC
AGTGGTTGGGTATTTTTATCCTGCTTGTCTCCTTGCTCCCACGGCGCCGA
AGCGGTACCGGGTAGATTTCACGACGGGATAGAGTGTGCGTCGACGATCC
ATTTGCAGGATCAAAGCTATCAGTATTTAAGTCATCCTGTCGCGCCAGTT
GTACCCGTGGTGCCGGGGGT
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protein sequence of jgi.p|Nanoce1779_2|594563

>mRNA_6315-protein ID=mRNA_6315-protein|Name=jgi.p|Nanoce1779_2|594563|organism=Nannochloropsis oceanica|type=polypeptide|length=241bp
MSQNGAKNEEDKRGDNADTKNPFTRYYAQLLHQQNMMQDTVRTGTYQNAF
LTHKIDFQDKVVLDVGTGSGILAFFAVQAGARLVYAAEASGMAKHAETLV
KRNGMEGKIIVVNKVVEEMELPEKVDIIVSEPIGFMLVHERMIETYLVAR
DKWLKPGGLMFPNAGEIVMCPFTDENLYNEQLAKTSFWSSSTDFYGMDLT
SLTEAALAEFFAQPVVGYFYPACLLAPTAPKRYRVDFTTG*
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mRNA from alignment at scaffold_15:325513..326957+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6315 ID=mRNA_6315|Name=jgi.p|Nanoce1779_2|594563|organism=Nannochloropsis oceanica|type=mRNA|length=1445bp|location=Sequence derived from alignment at scaffold_15:325513..326957+ (Nannochloropsis oceanica)
AGCACACGCAGGCGTTACCCTTCTCCGTATACTCCGTCGAGGGGTCGTCG
CTTCCTTGAGCAGGCATCACCACCATCATCGACACCTCACCCTCCAACCC
GCCGCAAGCATGTCCCAGAATGGAGCCAAGAACGAGGAGGATAAAAGAGG
AGACAACGCGGACACCAAGAATCCCTTCACTCGCTATTGTACGCTTGATT
GGTGATGTATGGGTAGTGGGACGGGGGGCATGAGTGGGGTATGACGGCCA
TGCAATTCTTTCCTTCTCCAGCGGCACCAAGCAACCCGAAGAGAATCTGT
GAAAAGCATGTCCCACTTGAACTTAGATGCGACAATTGCCATGTATTAGA
TACGTGCTACACACCATGCTATAAACGTCTACTACAATCTCTCCCCCAAA
ACACAGACGCCCAGCTCCTCCACCAGCAAAACATGATGCAAGACACGGTT
CGTACGGGAACCTACCAAAACGCTTTCCTGACTCACAAGATTGATTTTCA
GGATAAGGTCGTGCTGGACGTTGGCACAGGTTCAGGTATTCTGGCATTTT
TTGCCGTGCAAGCAGGGGCTCGGCTGGTGTATGCGGCCGAGGCGAGCGGG
ATGGCGAAGCATGCCGAGACGCTTGTAAAAAGGAACGGGATGGAGGGCAA
GATTATCGTGGTCAACAAAGTCGTGGAAGAAATGGAATTACCGGAGAAGG
TTGATATTATCGTCTCAGAGCCGATTGGCTTTATGTTGGTGCATGAGAGA
ATGATCGAGACGTACCTCGTGGCACGGGACAAATGGCTCAAGCCCGGGGG
GCTCATGTTCCCGAATGCAGGGGAGATTGTCATGTGCCCCTTCACGGACG
AAAATTTGTACAATGAGCAATTGGCCAAAACATCGTTTTGGTCGTCATCC
ACTGATTTCTATGGCATGGACTTGACGAGTCTGACGGAAGCGGCCCTGGC
TGAATTCTTCGCGCAGCCAGTGGTTGGGTATTTTTATCCTGCTTGTCTCC
TTGCTCCCACGGCGCCGAAGCGGTACCGGGTAGATTTCACGACGGTAAGT
TGCGAGGAATTGAAGGCGTTTGAGGTGCCTTATTCGTTTGTGGGGGAAAA
AACGGCGATAATGCATGGGATGGGTTGTTGGTTTGACATAGAATTTGCGG
GCTCGGAAAAGAGTGGGGCGGGGCCTGTGGTGCTTTCAACGAGCCCAGCA
GCGCGCGGAACGCATTGGTATCAGTGTCGATTGCTTTTGCCGCAGCCAAT
TGCGATTAATCGGGGGCAGACAGTGAGTGGCTCTTTGAAGTTTGAGGCGA
ACGATCAGTACTCATATGACTTAATGTTCATGGCCCGGTTGGATGGCACA
GGGATAGAGTGTGCGTCGACGATCCATTTGCAGGATCAAAGCTATCAGTA
TTTAAGTCATCCTGTCGCGCCAGTTGTACCCGTGGTGCCGGGGGT
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Coding sequence (CDS) from alignment at scaffold_15:325513..326957+

>mRNA_6315 ID=mRNA_6315|Name=jgi.p|Nanoce1779_2|594563|organism=Nannochloropsis oceanica|type=CDS|length=2169bp|location=Sequence derived from alignment at scaffold_15:325513..326957+ (Nannochloropsis oceanica)
ATGTCCCAGAATGGAGCCAAGAACGAGGAGGATAAAAGAGGAGACAACGC
GGACACCAAGAATCCCTTCACTCGCTATTACGCCCAGCTCCTCCACCAGC
AAAACATGATGCAAGACACGGTTCGTACGGGAACCTACCAAAACGCTTTC
CTGACTCACAAGATTGATTTTCAGGATAAGGTCGTGCTGGACGTTGGCAC
AGGTTCAGGTATTCTGGCATTTTTTGCCGTGCAAGCAGGGGCTCGGCTGG
TGTATGCGGCCGAGGCGAGCGGGATGGCGAAGCATGCCGAGACGCTTGTA
AAAAGGAACGGGATGGAGGGCAAGATTATCGTGGTCAACAAAGTCGTGGA
AGAAATGGAATTACCGGAGAAGGTTGATATTATCGTCTCAGAGCCGATTG
GCTTTATGTTGGTGCATGAGAGAATGATCGAGACGTACCTCGTGGCACGG
GACAAATGGCTCAAGCCCGGGGGGCTCATGTTCCCGAATGCAGGGGAGAT
TGTCATGTGCCCCTTCACGGACGAAAATTTGTACAATGAGCAATTGGCCA
AAACATCGTTTTGGTCGTCATCCACTGATTTCTATGGCATGGACTTGACG
AGTCTGACGGAAGCGGCCCTGGCTGAATTCTTCGCGCAGCCAGTGGTTGG
GTATTTTTATCCTGCTTGTCTCCTTGCTCCCACGGCGCCGAAGCGGTACC
GGGTAGATTTCACGACGGGATAGATGTCCCAGAATGGAGCCAAGAACGAG
GAGGATAAAAGAGGAGACAACGCGGACACCAAGAATCCCTTCACTCGCTA
TTACGCCCAGCTCCTCCACCAGCAAAACATGATGCAAGACACGGTTCGTA
CGGGAACCTACCAAAACGCTTTCCTGACTCACAAGATTGATTTTCAGGAT
AAGGTCGTGCTGGACGTTGGCACAGGTTCAGGTATTCTGGCATTTTTTGC
CGTGCAAGCAGGGGCTCGGCTGGTGTATGCGGCCGAGGCGAGCGGGATGG
CGAAGCATGCCGAGACGCTTGTAAAAAGGAACGGGATGGAGGGCAAGATT
ATCGTGGTCAACAAAGTCGTGGAAGAAATGGAATTACCGGAGAAGGTTGA
TATTATCGTCTCAGAGCCGATTGGCTTTATGTTGGTGCATGAGAGAATGA
TCGAGACGTACCTCGTGGCACGGGACAAATGGCTCAAGCCCGGGGGGCTC
ATGTTCCCGAATGCAGGGGAGATTGTCATGTGCCCCTTCACGGACGAAAA
TTTGTACAATGAGCAATTGGCCAAAACATCGTTTTGGTCGTCATCCACTG
ATTTCTATGGCATGGACTTGACGAGTCTGACGGAAGCGGCCCTGGCTGAA
TTCTTCGCGCAGCCAGTGGTTGGGTATTTTTATCCTGCTTGTCTCCTTGC
TCCCACGGCGCCGAAGCGGTACCGGGTAGATTTCACGACGGGATAGATGT
CCCAGAATGGAGCCAAGAACGAGGAGGATAAAAGAGGAGACAACGCGGAC
ACCAAGAATCCCTTCACTCGCTATTACGCCCAGCTCCTCCACCAGCAAAA
CATGATGCAAGACACGGTTCGTACGGGAACCTACCAAAACGCTTTCCTGA
CTCACAAGATTGATTTTCAGGATAAGGTCGTGCTGGACGTTGGCACAGGT
TCAGGTATTCTGGCATTTTTTGCCGTGCAAGCAGGGGCTCGGCTGGTGTA
TGCGGCCGAGGCGAGCGGGATGGCGAAGCATGCCGAGACGCTTGTAAAAA
GGAACGGGATGGAGGGCAAGATTATCGTGGTCAACAAAGTCGTGGAAGAA
ATGGAATTACCGGAGAAGGTTGATATTATCGTCTCAGAGCCGATTGGCTT
TATGTTGGTGCATGAGAGAATGATCGAGACGTACCTCGTGGCACGGGACA
AATGGCTCAAGCCCGGGGGGCTCATGTTCCCGAATGCAGGGGAGATTGTC
ATGTGCCCCTTCACGGACGAAAATTTGTACAATGAGCAATTGGCCAAAAC
ATCGTTTTGGTCGTCATCCACTGATTTCTATGGCATGGACTTGACGAGTC
TGACGGAAGCGGCCCTGGCTGAATTCTTCGCGCAGCCAGTGGTTGGGTAT
TTTTATCCTGCTTGTCTCCTTGCTCCCACGGCGCCGAAGCGGTACCGGGT
AGATTTCACGACGGGATAG
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Synonyms
Publications