jgi.p|Nanoce1779_2|649850, mRNA_6314 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|649850
Unique Name	mRNA_6314
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2797
Alignment location	scaffold_15:322543..325339 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	649936
Track	FilteredModels2
ProteinId	649850

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:322543..325339 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|649850	gene_6314	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|649850	mRNA_6314-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6314	CDS_6314	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:322543..325339+
coding sequence from alignment at scaffold_15:322543..325339+

mRNA sequence

>mRNA_6314 ID=mRNA_6314|Name=jgi.p|Nanoce1779_2|649850|organism=Nannochloropsis oceanica|type=mRNA|length=2797bp
CTCTCCTCCCTCTCTTCCCCCCTCGCGCACACCACATTCATCCATCCTCT
GCGCAAATACTGTCATACATGAATACAGCCGATACGAACGCTCATGTCCA
AGCGACCGCGGGCGGAAGAGCATGTCAACGGTGGTGGCGGCGGCCGACAA
GAGCACCACCATCGTGGAGAGGGGGGAGGCTTCAGCCAGGGTGGTAGCGG
CAGGGGTCATGGTGGACGAGGAGGCAAGATGCCCCACCTTTCGGCAGCAG
CTGAAGAGAAGCGACAGGGCATGCGCGTAAAAGAGATGGAGACGCTCCGA
AAGCGGGTAGTGGAAGAAGCGCCAGCTCCAGGTATATACATGCATGCAGC
ACACATTCGGACATAAGATACTACGTACTTGCCATTCTCTTACACCCATC
CTACACACCGCTACAATTACAGGCTCTCAACCTTTCATCGATGCTGGCAG
GAAACGCAAGACCTTCCAATCCTTGCCCCTGTCCAAAGTCACCCTCAAGG
GCCTTGGACAAAATAGCTTCACGGAGATGACTGACATCCAACTCGGTGCT
GTCCCCCACGCCCTGGCTGGACGCGACGTCCTCGGGGCCGCCAAGACCGG
GTCAGGCAAGACGCTTGCATTTGTGGTCCCGCTGTTGGAAAAATTGTACC
GGGAGGGATGGTCCCTTTCGGATGGGTTGGGGGCGTTGATTATCACTCCG
ACGAGGGAGTTGGCATTGCAAATTTTTGAAGTCTTGCGGTCGGTGGGGAA
GGGACACATGTTTTCAGCGGCGTTGCTGACAGGGGGTAAAAAGGAGTTCC
GAGAAGAACAGCGAAGGGTACCACGGATGAACATCATCGTGGCAACCCCG
GGACGGTTGTTGCAGCACTTGGAGGAGACCCCTGGATTTGATGCCAGTCA
GTTGCAGGTGTTGGTCTTAGACGAGGCGGATCGGATTCTGGACATGGGAT
TTAGTGCGCAATTGAACGCGATATTGGAGTATTTGCCTCAGGGGGGGGAT
AGGCAGACGTTGTTGTTCTCGGCGACACAGACCAAGTCGGTGCATGACTT
GGCACGGCTGTCCCTGGGGGAGGCCCCGCAGTATGTGGGTGTGCACGATA
AAAGCGAGCATGCCACCCCGGATCAGTTGGTACAGAATTACGTGATTTCT
CCATTGGAAGAGAAACTGGATATGCTCTGGTCGTTCCTCAAGAGTCACAT
GAAGCACAAGGTGGTTGTGTTTCTGTCCTCTTGCTCGCAGGTGCGGTATG
TGTATGAATGCTTTCGGTGCATGCAACCCGGGGTACCCCTGCTGGCGCTA
CACGGTAAGATAAAGCAGGCCAGACGGACTCAGATCTACTTTGATTTCGT
TCGGAGGCCCGCAGCGGTCTTGTTTGCAACGGACATTGCAGCGCGGGGTT
TGGATTTCCCAGCGTGTGATTGGGTGGTCCAGGTGGATGCACCTGAGGAC
GCGGCCATGTACATCCACAGAGTGGGGAGAACAGCGAGATACCAAAGCGG
GGGCAGGTCGCTGTTGTTTTTGTGCCCGAGTGAGGAGGAGGGCATGTTGA
AAAGGCTGAAACTGGCCCATGTCCCGGTCAAGCGGTTGACCATCAACCCC
AGCAAAACGACGAGCGTGAAGCAGAAGACTGCGGCCGTCGTGGCCTCCAA
CATGGAATGCAAGCGATTGGCAGGCAAGGCTTTCTCGTCTTACCTGCGTT
CGGTGGCGTTGATGCCCCACAAGGACATGTTCAATGTGTCTAAATTAGAC
TTGGAGGCCTTCGCAGACTCGCTGGGATTGCCCAAGTGTCCCTCGACCAA
ATTTTTGAAAATCTTGAAGGATGAGGAGGGGGGGGAGGGAGGGAGGGAGG
GTGTGAGGGCGAAGAAAAATAAGAGTAGGGCGCTGGAGCGGCTGAAGGAG
AAGATCAAGATGGAGAGGGCCGTGAAGGCGGGGGGGGGGAGGAAGGAGGA
AGTGGGGAGGAAGGAGAGGAAGAGTAACGGTGAGAGCGATAGCGGTAGCG
AAGAGGTTGAGAGTGAAGATGAGGATCACGAAGAGGAGGGAGGGTTGTTG
CGCGTGAAGCAGAAGCATGCATGGGATCAGGAGAAGGAGGAGGACGAGGA
GGATGCCGCAGTGGCCGCGCTATTGGCAAGGAAGGCAGCGAAGAAGAAAC
TGAAGGAAAGGATGAAGCTTCCTCCAGTGGGTAAGCCTGTGGCGCAGAAC
AAGAAAATTGTGTTTGCGGATAGTGACGAGGATGAGAAGGAAGAGAAGGA
GGGACGCCAGCAGCAACAACAGCTGCTCCAGGAGGAGGAGGGAGGGGAGG
ACGGAGGGGAGGACATGCTCACACTCAAGGCCAAGAACGAGGCGTACGTG
CAGATGGTCCAGCAACGACTCCAGGCAAGTCGGGAAAAGGATCGAGCAGC
CGAGCGAGAACGCGTACGAGAGAAACACAAGAAGAAGCGGCTGCGTGATA
AAGGAGAGAGAGACGAGGAGGAAGACGGGCTGGAAGGTGGAGCCGTTTTG
GGAAGCTATGAAGAGAAAGCGAGTGAAGAGGAAAGCGACGAGGAGGAGAG
TAAGGTCGACGAAGAGGACAGTGAAGAGGAAGTGGTACAGCAGAAAGTGA
AACGGTCCAAGCCCTTGTCTTTGCAAGAGCAGGAGGATGCCGTGCTGCGG
AGCTTGCGCGGTGGGAGTGGCATAATTTAGGGGAGGGTTAGATGGGAGAC
AACATTGAAAGACTCTGCGCGGCGACAAAAAGTGTGTCACAACGACGACG
ACGCAACCAAAGGTCAAATAAAGAACGAAATGCGGTCACTTAGCCAC

protein sequence of jgi.p|Nanoce1779_2|649850

>mRNA_6314-protein ID=mRNA_6314-protein|Name=jgi.p|Nanoce1779_2|649850|organism=Nannochloropsis oceanica|type=polypeptide|length=779bp
MQHTFGHKILRTCHSLTPILHTATITGSQPFIDAGRKRKTFQSLPLSKVT
LKGLGQNSFTEMTDIQLGAVPHALAGRDVLGAAKTGSGKTLAFVVPLLEK
LYREGWSLSDGLGALIITPTRELALQIFEVLRSVGKGHMFSAALLTGGKK
EFREEQRRVPRMNIIVATPGRLLQHLEETPGFDASQLQVLVLDEADRILD
MGFSAQLNAILEYLPQGGDRQTLLFSATQTKSVHDLARLSLGEAPQYVGV
HDKSEHATPDQLVQNYVISPLEEKLDMLWSFLKSHMKHKVVVFLSSCSQV
RYVYECFRCMQPGVPLLALHGKIKQARRTQIYFDFVRRPAAVLFATDIAA
RGLDFPACDWVVQVDAPEDAAMYIHRVGRTARYQSGGRSLLFLCPSEEEG
MLKRLKLAHVPVKRLTINPSKTTSVKQKTAAVVASNMECKRLAGKAFSSY
LRSVALMPHKDMFNVSKLDLEAFADSLGLPKCPSTKFLKILKDEEGGEGG
REGVRAKKNKSRALERLKEKIKMERAVKAGGGRKEEVGRKERKSNGESDS
GSEEVESEDEDHEEEGGLLRVKQKHAWDQEKEEDEEDAAVAALLARKAAK
KKLKERMKLPPVGKPVAQNKKIVFADSDEDEKEEKEGRQQQQQLLQEEEG
GEDGGEDMLTLKAKNEAYVQMVQQRLQASREKDRAAERERVREKHKKKRL
RDKGERDEEEDGLEGGAVLGSYEEKASEEESDEEESKVDEEDSEEEVVQQ
KVKRSKPLSLQEQEDAVLRSLRGGSGII*

mRNA from alignment at scaffold_15:322543..325339+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6314 ID=mRNA_6314|Name=jgi.p|Nanoce1779_2|649850|organism=Nannochloropsis oceanica|type=mRNA|length=2797bp|location=Sequence derived from alignment at scaffold_15:322543..325339+ (Nannochloropsis oceanica)
CTCTCCTCCCTCTCTTCCCCCCTCGCGCACACCACATTCATCCATCCTCT
GCGCAAATACTGTCATACATGAATACAGCCGATACGAACGCTCATGTCCA
AGCGACCGCGGGCGGAAGAGCATGTCAACGGTGGTGGCGGCGGCCGACAA
GAGCACCACCATCGTGGAGAGGGGGGAGGCTTCAGCCAGGGTGGTAGCGG
CAGGGGTCATGGTGGACGAGGAGGCAAGATGCCCCACCTTTCGGCAGCAG
CTGAAGAGAAGCGACAGGGCATGCGCGTAAAAGAGATGGAGACGCTCCGA
AAGCGGGTAGTGGAAGAAGCGCCAGCTCCAGGTATATACATGCATGCAGC
ACACATTCGGACATAAGATACTACGTACTTGCCATTCTCTTACACCCATC
CTACACACCGCTACAATTACAGGCTCTCAACCTTTCATCGATGCTGGCAG
GAAACGCAAGACCTTCCAATCCTTGCCCCTGTCCAAAGTCACCCTCAAGG
GCCTTGGACAAAATAGCTTCACGGAGATGACTGACATCCAACTCGGTGCT
GTCCCCCACGCCCTGGCTGGACGCGACGTCCTCGGGGCCGCCAAGACCGG
GTCAGGCAAGACGCTTGCATTTGTGGTCCCGCTGTTGGAAAAATTGTACC
GGGAGGGATGGTCCCTTTCGGATGGGTTGGGGGCGTTGATTATCACTCCG
ACGAGGGAGTTGGCATTGCAAATTTTTGAAGTCTTGCGGTCGGTGGGGAA
GGGACACATGTTTTCAGCGGCGTTGCTGACAGGGGGTAAAAAGGAGTTCC
GAGAAGAACAGCGAAGGGTACCACGGATGAACATCATCGTGGCAACCCCG
GGACGGTTGTTGCAGCACTTGGAGGAGACCCCTGGATTTGATGCCAGTCA
GTTGCAGGTGTTGGTCTTAGACGAGGCGGATCGGATTCTGGACATGGGAT
TTAGTGCGCAATTGAACGCGATATTGGAGTATTTGCCTCAGGGGGGGGAT
AGGCAGACGTTGTTGTTCTCGGCGACACAGACCAAGTCGGTGCATGACTT
GGCACGGCTGTCCCTGGGGGAGGCCCCGCAGTATGTGGGTGTGCACGATA
AAAGCGAGCATGCCACCCCGGATCAGTTGGTACAGAATTACGTGATTTCT
CCATTGGAAGAGAAACTGGATATGCTCTGGTCGTTCCTCAAGAGTCACAT
GAAGCACAAGGTGGTTGTGTTTCTGTCCTCTTGCTCGCAGGTGCGGTATG
TGTATGAATGCTTTCGGTGCATGCAACCCGGGGTACCCCTGCTGGCGCTA
CACGGTAAGATAAAGCAGGCCAGACGGACTCAGATCTACTTTGATTTCGT
TCGGAGGCCCGCAGCGGTCTTGTTTGCAACGGACATTGCAGCGCGGGGTT
TGGATTTCCCAGCGTGTGATTGGGTGGTCCAGGTGGATGCACCTGAGGAC
GCGGCCATGTACATCCACAGAGTGGGGAGAACAGCGAGATACCAAAGCGG
GGGCAGGTCGCTGTTGTTTTTGTGCCCGAGTGAGGAGGAGGGCATGTTGA
AAAGGCTGAAACTGGCCCATGTCCCGGTCAAGCGGTTGACCATCAACCCC
AGCAAAACGACGAGCGTGAAGCAGAAGACTGCGGCCGTCGTGGCCTCCAA
CATGGAATGCAAGCGATTGGCAGGCAAGGCTTTCTCGTCTTACCTGCGTT
CGGTGGCGTTGATGCCCCACAAGGACATGTTCAATGTGTCTAAATTAGAC
TTGGAGGCCTTCGCAGACTCGCTGGGATTGCCCAAGTGTCCCTCGACCAA
ATTTTTGAAAATCTTGAAGGATGAGGAGGGGGGGGAGGGAGGGAGGGAGG
GTGTGAGGGCGAAGAAAAATAAGAGTAGGGCGCTGGAGCGGCTGAAGGAG
AAGATCAAGATGGAGAGGGCCGTGAAGGCGGGGGGGGGGAGGAAGGAGGA
AGTGGGGAGGAAGGAGAGGAAGAGTAACGGTGAGAGCGATAGCGGTAGCG
AAGAGGTTGAGAGTGAAGATGAGGATCACGAAGAGGAGGGAGGGTTGTTG
CGCGTGAAGCAGAAGCATGCATGGGATCAGGAGAAGGAGGAGGACGAGGA
GGATGCCGCAGTGGCCGCGCTATTGGCAAGGAAGGCAGCGAAGAAGAAAC
TGAAGGAAAGGATGAAGCTTCCTCCAGTGGGTAAGCCTGTGGCGCAGAAC
AAGAAAATTGTGTTTGCGGATAGTGACGAGGATGAGAAGGAAGAGAAGGA
GGGACGCCAGCAGCAACAACAGCTGCTCCAGGAGGAGGAGGGAGGGGAGG
ACGGAGGGGAGGACATGCTCACACTCAAGGCCAAGAACGAGGCGTACGTG
CAGATGGTCCAGCAACGACTCCAGGCAAGTCGGGAAAAGGATCGAGCAGC
CGAGCGAGAACGCGTACGAGAGAAACACAAGAAGAAGCGGCTGCGTGATA
AAGGAGAGAGAGACGAGGAGGAAGACGGGCTGGAAGGTGGAGCCGTTTTG
GGAAGCTATGAAGAGAAAGCGAGTGAAGAGGAAAGCGACGAGGAGGAGAG
TAAGGTCGACGAAGAGGACAGTGAAGAGGAAGTGGTACAGCAGAAAGTGA
AACGGTCCAAGCCCTTGTCTTTGCAAGAGCAGGAGGATGCCGTGCTGCGG
AGCTTGCGCGGTGGGAGTGGCATAATTTAGGGGAGGGTTAGATGGGAGAC
AACATTGAAAGACTCTGCGCGGCGACAAAAAGTGTGTCACAACGACGACG
ACGCAACCAAAGGTCAAATAAAGAACGAAATGCGGTCACTTAGCCAC

Coding sequence (CDS) from alignment at scaffold_15:322543..325339+

>mRNA_6314 ID=mRNA_6314|Name=jgi.p|Nanoce1779_2|649850|organism=Nannochloropsis oceanica|type=CDS|length=2337bp|location=Sequence derived from alignment at scaffold_15:322543..325339+ (Nannochloropsis oceanica)
ATGCAGCACACATTCGGACATAAGATACTACGTACTTGCCATTCTCTTAC
ACCCATCCTACACACCGCTACAATTACAGGCTCTCAACCTTTCATCGATG
CTGGCAGGAAACGCAAGACCTTCCAATCCTTGCCCCTGTCCAAAGTCACC
CTCAAGGGCCTTGGACAAAATAGCTTCACGGAGATGACTGACATCCAACT
CGGTGCTGTCCCCCACGCCCTGGCTGGACGCGACGTCCTCGGGGCCGCCA
AGACCGGGTCAGGCAAGACGCTTGCATTTGTGGTCCCGCTGTTGGAAAAA
TTGTACCGGGAGGGATGGTCCCTTTCGGATGGGTTGGGGGCGTTGATTAT
CACTCCGACGAGGGAGTTGGCATTGCAAATTTTTGAAGTCTTGCGGTCGG
TGGGGAAGGGACACATGTTTTCAGCGGCGTTGCTGACAGGGGGTAAAAAG
GAGTTCCGAGAAGAACAGCGAAGGGTACCACGGATGAACATCATCGTGGC
AACCCCGGGACGGTTGTTGCAGCACTTGGAGGAGACCCCTGGATTTGATG
CCAGTCAGTTGCAGGTGTTGGTCTTAGACGAGGCGGATCGGATTCTGGAC
ATGGGATTTAGTGCGCAATTGAACGCGATATTGGAGTATTTGCCTCAGGG
GGGGGATAGGCAGACGTTGTTGTTCTCGGCGACACAGACCAAGTCGGTGC
ATGACTTGGCACGGCTGTCCCTGGGGGAGGCCCCGCAGTATGTGGGTGTG
CACGATAAAAGCGAGCATGCCACCCCGGATCAGTTGGTACAGAATTACGT
GATTTCTCCATTGGAAGAGAAACTGGATATGCTCTGGTCGTTCCTCAAGA
GTCACATGAAGCACAAGGTGGTTGTGTTTCTGTCCTCTTGCTCGCAGGTG
CGGTATGTGTATGAATGCTTTCGGTGCATGCAACCCGGGGTACCCCTGCT
GGCGCTACACGGTAAGATAAAGCAGGCCAGACGGACTCAGATCTACTTTG
ATTTCGTTCGGAGGCCCGCAGCGGTCTTGTTTGCAACGGACATTGCAGCG
CGGGGTTTGGATTTCCCAGCGTGTGATTGGGTGGTCCAGGTGGATGCACC
TGAGGACGCGGCCATGTACATCCACAGAGTGGGGAGAACAGCGAGATACC
AAAGCGGGGGCAGGTCGCTGTTGTTTTTGTGCCCGAGTGAGGAGGAGGGC
ATGTTGAAAAGGCTGAAACTGGCCCATGTCCCGGTCAAGCGGTTGACCAT
CAACCCCAGCAAAACGACGAGCGTGAAGCAGAAGACTGCGGCCGTCGTGG
CCTCCAACATGGAATGCAAGCGATTGGCAGGCAAGGCTTTCTCGTCTTAC
CTGCGTTCGGTGGCGTTGATGCCCCACAAGGACATGTTCAATGTGTCTAA
ATTAGACTTGGAGGCCTTCGCAGACTCGCTGGGATTGCCCAAGTGTCCCT
CGACCAAATTTTTGAAAATCTTGAAGGATGAGGAGGGGGGGGAGGGAGGG
AGGGAGGGTGTGAGGGCGAAGAAAAATAAGAGTAGGGCGCTGGAGCGGCT
GAAGGAGAAGATCAAGATGGAGAGGGCCGTGAAGGCGGGGGGGGGGAGGA
AGGAGGAAGTGGGGAGGAAGGAGAGGAAGAGTAACGGTGAGAGCGATAGC
GGTAGCGAAGAGGTTGAGAGTGAAGATGAGGATCACGAAGAGGAGGGAGG
GTTGTTGCGCGTGAAGCAGAAGCATGCATGGGATCAGGAGAAGGAGGAGG
ACGAGGAGGATGCCGCAGTGGCCGCGCTATTGGCAAGGAAGGCAGCGAAG
AAGAAACTGAAGGAAAGGATGAAGCTTCCTCCAGTGGGTAAGCCTGTGGC
GCAGAACAAGAAAATTGTGTTTGCGGATAGTGACGAGGATGAGAAGGAAG
AGAAGGAGGGACGCCAGCAGCAACAACAGCTGCTCCAGGAGGAGGAGGGA
GGGGAGGACGGAGGGGAGGACATGCTCACACTCAAGGCCAAGAACGAGGC
GTACGTGCAGATGGTCCAGCAACGACTCCAGGCAAGTCGGGAAAAGGATC
GAGCAGCCGAGCGAGAACGCGTACGAGAGAAACACAAGAAGAAGCGGCTG
CGTGATAAAGGAGAGAGAGACGAGGAGGAAGACGGGCTGGAAGGTGGAGC
CGTTTTGGGAAGCTATGAAGAGAAAGCGAGTGAAGAGGAAAGCGACGAGG
AGGAGAGTAAGGTCGACGAAGAGGACAGTGAAGAGGAAGTGGTACAGCAG
AAAGTGAAACGGTCCAAGCCCTTGTCTTTGCAAGAGCAGGAGGATGCCGT
GCTGCGGAGCTTGCGCGGTGGGAGTGGCATAATTTAG

Synonyms

Publications