jgi.p|Nanoce1779_2|557193, mRNA_6313 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|557193
Unique Name	mRNA_6313
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2313
Alignment location	scaffold_15:319966..322425 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	557279
Track	FilteredModels2
ProteinId	557193

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:319966..322425 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|557193	gene_6313	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|557193	mRNA_6313-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6313	CDS_6313	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:319966..322425+
coding sequence from alignment at scaffold_15:319966..322425+

mRNA sequence

>mRNA_6313 ID=mRNA_6313|Name=jgi.p|Nanoce1779_2|557193|organism=Nannochloropsis oceanica|type=mRNA|length=2313bp
CACACTTGCCTCACACTTGCCTCACACTTGCCTCACGCTTGTCCCCCTTC
CCACGCACAGCGCAGTGCCACAATCAAAATCAAGGCCCTCAATAGCTCGT
TGTTCTCATTCCTGCAATCATGCCATTTTTCATCTCTCCTCCCCATTACA
ACCCATAGCAACCACCATCATCATGCCGCCTAAGAAGCAAGCGGCCGCCT
CCCCTGCTGCCCCGACTCCCTGCACCAGCACCGCCACGCCCGGCCTAGTG
CTCAGCAATCGCTGGAGACTTGGTTCCCTGCTTGGAGAAGGCGCTTGTGG
GCAAGTTTTTGCGGTGGAGGACGTAACAGACGCTCAAAACGAGCATGCAT
GGGTCATGAAGCTCTCCCCCCTTCCTCCTCGTCCTCCCCCAGGCGTGGCC
CGGAAGAAGAACAAGACCAACGATGCCATGAAACGCAACGCCGACACGCT
GTACATGGAGCAGCTCATCTATAAGAACTACCTCATGAATGTGCCGAATG
TGCCTGTCTTGCCCAATCTCCTATCGTACGGGGAGGATAAAGGCTTTCGC
TTCCTCGTCATGCAACGCCTCGGCCAAGACTTGACCCAATTATTTAGGAG
TAAAAATTACAAGTTCTCTCTTGCTACTATCGCGGATTTGGGGAAGCAGA
TGCTTGAGGGGATTCGACGGCTGCACGAACGGCAGTTGTTATTTATTGAC
GTGAAGCCCGAGAATTTTATGTTGGGGCAGCAAGGGACGTCGGAGGCCAG
CAAGGTCTTCCTGGTTGATTTTGGCCTGGTGGAAAAATACACGGCCAGCA
GCGGTGCACATAAGCCTCAGGATGGAGCAGGTGCTGCGGGAGGAGGAGTA
GGCACGCCTTTATTTTCCAGCCTGGCCTGTCATGAGGGGAGGCCCGCGGG
ACGGAGGGATGATCTGGAAGCACTGGGGTGGGTGTTGGTGTTCTTTTTGC
GAGGGGGGGACCTGCCCTGGGCCGGGGCAAAGAATGATGCCGAGTGCCTA
AAGATGAAGAGGGAGGCGAAAGTGGACGTGTTGTTGAAGGGGAGGGAGGG
AGGGAAGGAGGTGGGGAGGGTGGTGGAGATGGCACGCGAGACATCTTTTG
AGGCTGTACCTGATTACGCGGCTTTTGAAAAGGTGTTGGTTGGGTTGGGG
AAAGTGAAGGAGGCAGGGAATAACGGAAGAGCAGCAGGAGCAGGAGCAGG
AGAAGGAGGAGGAGAGATGAAGAAAGGGGGGAGGAAGAGGAAGAGTGCCG
TTGCGATGGCTGGGGAAGGAAAGGGGGAAGGAGGAGAAGGGGGAGGGGGA
GAAGTTATTGTGTTATCACCGGATGACCCTGCTGGTAGAGCAGACAATAG
AGGGGACAGTAAGACAGCAGCAGTAAACGCAGCAGCAGCAATTGAAGAAG
AAGAGCGAGGAGGGAGTCCAGGTGAACGGCTGTTAAACAAGGGAAATGCG
TTGTTGAAGGGGTTGGGAGGGGCTGCCACCTCCAGCAACAGCAAGAGCAG
CAGCAGCAGCCGTAACAACAAGAGCAACAACAGTAGTGGTGGTGCACAGG
CCACCGAAAAAATGAAGACGACGACAAAGAAGATGAAGACACAGAGAGTA
GCAGGAAAGGGCACGCCGAATGTGATTGGCAATGATGACAACGAGGAGGG
AGGGAGGGGAGGAGGGGAGGAGGAGGAGGAAGAGGATAATCAGAGTGTGG
CCAGCATGGCCAGCGAAATGAAGGCCTTGTCGCTTGAAGTTTTGGAGGGC
CCTCATAAAGGACAGACATTCCATTTGGGTGGACTGGAGAAGGTGATGTA
CATAGGGAGGGAAGGAGGTTTGGGGGTGGTATTGTCGAAGGATGGGGGTG
TTGGGGGAAGGCATGTGAAGCTGAAGGCATCGGGTAGGGATAGTGTGCAC
TCGCTGAAGGTAATGCCTGTGGTTGGAACGGGCCTGGGGCCTGTGATGGT
GAATAAGGTGGAGGTCGGGAGGAATGGGCGGGTGTTGTTCGCGGGGGATC
TGCTGCAGGTGGGCGGGAGTACCTTGGTCTTGCGAAGAGGGTAAAGGAGG
AGAGATAGGGAGGAGTAGGGAGGGTAGCAGAGTCGCACTGTAGAGGTAGC
AGACACACGAAGGCATACAGCAAGAAGGCACGAAGTGGAAGAAGAGCTCC
ATAAAAAGAGAAACTGTACTGTGCAGTTATGAGGCAGGTATGAAGCAGGC
TATTGGAGACGCGTTGACAGATGTGAGAGGGAGCAGTGGCCAGAACGTGG
GCAAGAAGCATAGGAAGGGAAAAAATAAAAAGAACCTAGAGTGCTCTAAA
ATCAAAAGGTGCC

protein sequence of jgi.p|Nanoce1779_2|557193

>mRNA_6313-protein ID=mRNA_6313-protein|Name=jgi.p|Nanoce1779_2|557193|organism=Nannochloropsis oceanica|type=polypeptide|length=624bp
MPPKKQAAASPAAPTPCTSTATPGLVLSNRWRLGSLLGEGACGQVFAVED
VTDAQNEHAWVMKLSPLPPRPPPGVARKKNKTNDAMKRNADTLYMEQLIY
KNYLMNVPNVPVLPNLLSYGEDKGFRFLVMQRLGQDLTQLFRSKNYKFSL
ATIADLGKQMLEGIRRLHERQLLFIDVKPENFMLGQQGTSEASKVFLVDF
GLVEKYTASSGAHKPQDGAGAAGGGVGTPLFSSLACHEGRPAGRRDDLEA
LGWVLVFFLRGGDLPWAGAKNDAECLKMKREAKVDVLLKGREGGKEVGRV
VEMARETSFEAVPDYAAFEKVLVGLGKVKEAGNNGRAAGAGAGEGGGEMK
KGGRKRKSAVAMAGEGKGEGGEGGGGEVIVLSPDDPAGRADNRGDSKTAA
VNAAAAIEEEERGGSPGERLLNKGNALLKGLGGAATSSNSKSSSSSRNNK
SNNSSGGAQATEKMKTTTKKMKTQRVAGKGTPNVIGNDDNEEGGRGGGEE
EEEEDNQSVASMASEMKALSLEVLEGPHKGQTFHLGGLEKVMYIGREGGL
GVVLSKDGGVGGRHVKLKASGRDSVHSLKVMPVVGTGLGPVMVNKVEVGR
NGRVLFAGDLLQVGGSTLVLRRG*

mRNA from alignment at scaffold_15:319966..322425+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6313 ID=mRNA_6313|Name=jgi.p|Nanoce1779_2|557193|organism=Nannochloropsis oceanica|type=mRNA|length=2460bp|location=Sequence derived from alignment at scaffold_15:319966..322425+ (Nannochloropsis oceanica)
CACACTTGCCTCACACTTGCCTCACACTTGCCTCACGCTTGTCCCCCTTC
CCACGCACAGCGCAGTGCCACAATCAAAATCAAGGCCCTCAATAGCTCGT
TGTTCTCATTCCTGCAATCATGCCATTTTTCATCTCTCCTCCCCATTACA
ACCCATAGCAACCACCATCATCATGCCGCCTAAGAAGCAAGCGGCCGCCT
CCCCTGCTGCCCCGACTCCCTGCACCAGCACCGCCACGCCCGGCCTAGTG
CTCAGCAATCGCTGGAGACTTGGTTCCCTGCTTGGAGAAGGCGCTTGTGG
GCAAGTTTTTGCGGTGGAGGACGTAACAGACGCTCAAAACGAGCATGCAT
GGGTCATGAAGCTCTCCCCCCTTCCTCCTCGTCCTCCCCCAGGCGTGGCC
CGGAAGAAGAACAAGACCAACGATGCCATGAAACGCAACGCCGACACGCT
GTACATGGAGCAGCTCATCTATAAGAACTACCTCATGAATGTGCCGAATG
TGCCTGTCTTGCCCAATCTCCTATCGTACGGGGAGGATAAAGGCTTTCGC
TTCCTCGTCATGCAACGCCTCGGCCAAGACTTGACCCAATTATTTAGGAG
TAAAAATTACAAGTTCTCTCTTGCTACTATCGCGGATTTGGGGAAGCAGA
TGCTTGAGGGGATTCGACGGCTGCACGAACGGCAGTTGTTATTTATTGAC
GTGAAGCCCGAGAATTTTATGTTGGGGCAGCAAGGGACGTCGGAGGCCAG
CAAGGTGAGCAAGGGAGGGAGAGGAGAGGGAAAGAGAGATGTGAAGGAAG
GGAATTCAGCGGCTGACATCTCGGTTTGTGTAGGGAAAAAAAGTGCTCAA
TTTTTTTGGAAAACTCACCAACCCTGTCCTCTCTCCTCTGCCCTCCCTTA
GGTCTTCCTGGTTGATTTTGGCCTGGTGGAAAAATACACGGCCAGCAGCG
GTGCACATAAGCCTCAGGATGGAGCAGGTGCTGCGGGAGGAGGAGTAGGC
ACGCCTTTATTTTCCAGCCTGGCCTGTCATGAGGGGAGGCCCGCGGGACG
GAGGGATGATCTGGAAGCACTGGGGTGGGTGTTGGTGTTCTTTTTGCGAG
GGGGGGACCTGCCCTGGGCCGGGGCAAAGAATGATGCCGAGTGCCTAAAG
ATGAAGAGGGAGGCGAAAGTGGACGTGTTGTTGAAGGGGAGGGAGGGAGG
GAAGGAGGTGGGGAGGGTGGTGGAGATGGCACGCGAGACATCTTTTGAGG
CTGTACCTGATTACGCGGCTTTTGAAAAGGTGTTGGTTGGGTTGGGGAAA
GTGAAGGAGGCAGGGAATAACGGAAGAGCAGCAGGAGCAGGAGCAGGAGA
AGGAGGAGGAGAGATGAAGAAAGGGGGGAGGAAGAGGAAGAGTGCCGTTG
CGATGGCTGGGGAAGGAAAGGGGGAAGGAGGAGAAGGGGGAGGGGGAGAA
GTTATTGTGTTATCACCGGATGACCCTGCTGGTAGAGCAGACAATAGAGG
GGACAGTAAGACAGCAGCAGTAAACGCAGCAGCAGCAATTGAAGAAGAAG
AGCGAGGAGGGAGTCCAGGTGAACGGCTGTTAAACAAGGGAAATGCGTTG
TTGAAGGGGTTGGGAGGGGCTGCCACCTCCAGCAACAGCAAGAGCAGCAG
CAGCAGCCGTAACAACAAGAGCAACAACAGTAGTGGTGGTGCACAGGCCA
CCGAAAAAATGAAGACGACGACAAAGAAGATGAAGACACAGAGAGTAGCA
GGAAAGGGCACGCCGAATGTGATTGGCAATGATGACAACGAGGAGGGAGG
GAGGGGAGGAGGGGAGGAGGAGGAGGAAGAGGATAATCAGAGTGTGGCCA
GCATGGCCAGCGAAATGAAGGCCTTGTCGCTTGAAGTTTTGGAGGGCCCT
CATAAAGGACAGACATTCCATTTGGGTGGACTGGAGAAGGTGATGTACAT
AGGGAGGGAAGGAGGTTTGGGGGTGGTATTGTCGAAGGATGGGGGTGTTG
GGGGAAGGCATGTGAAGCTGAAGGCATCGGGTAGGGATAGTGTGCACTCG
CTGAAGGTAATGCCTGTGGTTGGAACGGGCCTGGGGCCTGTGATGGTGAA
TAAGGTGGAGGTCGGGAGGAATGGGCGGGTGTTGTTCGCGGGGGATCTGC
TGCAGGTGGGCGGGAGTACCTTGGTCTTGCGAAGAGGGTAAAGGAGGAGA
GATAGGGAGGAGTAGGGAGGGTAGCAGAGTCGCACTGTAGAGGTAGCAGA
CACACGAAGGCATACAGCAAGAAGGCACGAAGTGGAAGAAGAGCTCCATA
AAAAGAGAAACTGTACTGTGCAGTTATGAGGCAGGTATGAAGCAGGCTAT
TGGAGACGCGTTGACAGATGTGAGAGGGAGCAGTGGCCAGAACGTGGGCA
AGAAGCATAGGAAGGGAAAAAATAAAAAGAACCTAGAGTGCTCTAAAATC
AAAAGGTGCC

Coding sequence (CDS) from alignment at scaffold_15:319966..322425+

>mRNA_6313 ID=mRNA_6313|Name=jgi.p|Nanoce1779_2|557193|organism=Nannochloropsis oceanica|type=CDS|length=3744bp|location=Sequence derived from alignment at scaffold_15:319966..322425+ (Nannochloropsis oceanica)
ATGCCGCCTAAGAAGCAAGCGGCCGCCTCCCCTGCTGCCCCGACTCCCTG
CACCAGCACCGCCACGCCCGGCCTAGTGCTCAGCAATCGCTGGAGACTTG
GTTCCCTGCTTGGAGAAGGCGCTTGTGGGCAAGTTTTTGCGGTGGAGGAC
GTAACAGACGCTCAAAACGAGCATGCATGGGTCATGAAGCTCTCCCCCCT
TCCTCCTCGTCCTCCCCCAGGCGTGGCCCGGAAGAAGAACAAGACCAACG
ATGCCATGAAACGCAACGCCGACACGCTGTACATGGAGCAGCTCATCTAT
AAGAACTACCTCATGAATGTGCCGAATGTGCCTGTCTTGCCCAATCTCCT
ATCGTACGGGGAGGATAAAGGCTTTCGCTTCCTCGTCATGCAACGCCTCG
GCCAAGACTTGACCCAATTATTTAGGAGTAAAAATTACAAGTTCTCTCTT
GCTACTATCGCGGATTTGGGGAAGCAGATGCTTGAGGGGATTCGACGGCT
GCACGAACGGCAGTTGTTATTTATTGACGTGAAGCCCGAGAATTTTATGT
TGGGGCAGCAAGGGACGTCGGAGGCCAGCAAGGTCTTCCTGGTTGATTTT
GGCCTGGTGGAAAAATACACGGCCAGCAGCGGTGCACATAAGCCTCAGGA
TGGAGCAGGTGCTGCGGGAGGAGGAGTAGGCACGCCTTTATTTTCCAGCC
TGGCCTGTCATGAGGGGAGGCCCGCGGGACGGAGGGATGATCTGGAAGCA
CTGGGGTGGGTGTTGGTGTTCTTTTTGCGAGGGGGGGACCTGCCCTGGGC
CGGGGCAAAGAATGATGCCGAGTGCCTAAAGATGAAGAGGGAGGCGAAAG
TGGACGTGTTGTTGAAGGGGAGGGAGGGAGGGAAGGAGGTGGGGAGGGTG
GTGGAGATGGCACGCGAGACATCTTTTGAGGCTGTACCTGATTACGCGGC
TTTTGAAAAGGTGTTGGTTGGGTTGGGGAAAGTGAAGGAGGCAGGGAATA
ACGGAAGAGCAGCAGGAGCAGGAGCAGGAGAAGGAGGAGGAGAGATGAAG
AAAGGGGGGAGGAAGAGGAAGAGTGCCGTTGCGATGGCTGGGGAAGGAAA
GGGGGAAGGAGGAGAAGGGGGAGGGGGAGAAGTTATTGTGTTATCACCGG
ATGACCCTGCTGGTAGAGCAGACAATAGAGGGGACAGTAAGACAGCAGCA
GTAAACGCAGCAGCAGCAATTGAAGAAGAAGAGCGAGGAGGGAGTCCAGG
TGAACGGCTGTTAAACAAGGGAAATGCGTTGTTGAAGGGGTTGGGAGGGG
CTGCCACCTCCAGCAACAGCAAGAGCAGCAGCAGCAGCCGTAACAACAAG
AGCAACAACAGTAGTGGTGGTGCACAGGCCACCGAAAAAATGAAGACGAC
GACAAAGAAGATGAAGACACAGAGAGTAGCAGGAAAGGGCACGCCGAATG
TGATTGGCAATGATGACAACGAGGAGGGAGGGAGGGGAGGAGGGGAGGAG
GAGGAGGAAGAGGATAATCAGAGTGTGGCCAGCATGGCCAGCGAAATGAA
GGCCTTGTCGCTTGAAGTTTTGGAGGGCCCTCATAAAGGACAGACATTCC
ATTTGGGTGGACTGGAGAAGGTGATGTACATAGGGAGGGAAGGAGGTTTG
GGGGTGGTATTGTCGAAGGATGGGGGTGTTGGGGGAAGGCATGTGAAGCT
GAAGGCATCGGGTAGGGATAGTGTGCACTCGCTGAAGGTAATGCCTGTGG
TTGGAACGGGCCTGGGGCCTGTGATGGTGAATAAGGTGGAGGTCGGGAGG
AATGGGCGGGTGTTGTTCGCGGGGGATCTGCTGCAGGTGGGCGGGAGTAC
CTTGGTCTTGCGAAGAGGGTAAATGCCGCCTAAGAAGCAAGCGGCCGCCT
CCCCTGCTGCCCCGACTCCCTGCACCAGCACCGCCACGCCCGGCCTAGTG
CTCAGCAATCGCTGGAGACTTGGTTCCCTGCTTGGAGAAGGCGCTTGTGG
GCAAGTTTTTGCGGTGGAGGACGTAACAGACGCTCAAAACGAGCATGCAT
GGGTCATGAAGCTCTCCCCCCTTCCTCCTCGTCCTCCCCCAGGCGTGGCC
CGGAAGAAGAACAAGACCAACGATGCCATGAAACGCAACGCCGACACGCT
GTACATGGAGCAGCTCATCTATAAGAACTACCTCATGAATGTGCCGAATG
TGCCTGTCTTGCCCAATCTCCTATCGTACGGGGAGGATAAAGGCTTTCGC
TTCCTCGTCATGCAACGCCTCGGCCAAGACTTGACCCAATTATTTAGGAG
TAAAAATTACAAGTTCTCTCTTGCTACTATCGCGGATTTGGGGAAGCAGA
TGCTTGAGGGGATTCGACGGCTGCACGAACGGCAGTTGTTATTTATTGAC
GTGAAGCCCGAGAATTTTATGTTGGGGCAGCAAGGGACGTCGGAGGCCAG
CAAGGTCTTCCTGGTTGATTTTGGCCTGGTGGAAAAATACACGGCCAGCA
GCGGTGCACATAAGCCTCAGGATGGAGCAGGTGCTGCGGGAGGAGGAGTA
GGCACGCCTTTATTTTCCAGCCTGGCCTGTCATGAGGGGAGGCCCGCGGG
ACGGAGGGATGATCTGGAAGCACTGGGGTGGGTGTTGGTGTTCTTTTTGC
GAGGGGGGGACCTGCCCTGGGCCGGGGCAAAGAATGATGCCGAGTGCCTA
AAGATGAAGAGGGAGGCGAAAGTGGACGTGTTGTTGAAGGGGAGGGAGGG
AGGGAAGGAGGTGGGGAGGGTGGTGGAGATGGCACGCGAGACATCTTTTG
AGGCTGTACCTGATTACGCGGCTTTTGAAAAGGTGTTGGTTGGGTTGGGG
AAAGTGAAGGAGGCAGGGAATAACGGAAGAGCAGCAGGAGCAGGAGCAGG
AGAAGGAGGAGGAGAGATGAAGAAAGGGGGGAGGAAGAGGAAGAGTGCCG
TTGCGATGGCTGGGGAAGGAAAGGGGGAAGGAGGAGAAGGGGGAGGGGGA
GAAGTTATTGTGTTATCACCGGATGACCCTGCTGGTAGAGCAGACAATAG
AGGGGACAGTAAGACAGCAGCAGTAAACGCAGCAGCAGCAATTGAAGAAG
AAGAGCGAGGAGGGAGTCCAGGTGAACGGCTGTTAAACAAGGGAAATGCG
TTGTTGAAGGGGTTGGGAGGGGCTGCCACCTCCAGCAACAGCAAGAGCAG
CAGCAGCAGCCGTAACAACAAGAGCAACAACAGTAGTGGTGGTGCACAGG
CCACCGAAAAAATGAAGACGACGACAAAGAAGATGAAGACACAGAGAGTA
GCAGGAAAGGGCACGCCGAATGTGATTGGCAATGATGACAACGAGGAGGG
AGGGAGGGGAGGAGGGGAGGAGGAGGAGGAAGAGGATAATCAGAGTGTGG
CCAGCATGGCCAGCGAAATGAAGGCCTTGTCGCTTGAAGTTTTGGAGGGC
CCTCATAAAGGACAGACATTCCATTTGGGTGGACTGGAGAAGGTGATGTA
CATAGGGAGGGAAGGAGGTTTGGGGGTGGTATTGTCGAAGGATGGGGGTG
TTGGGGGAAGGCATGTGAAGCTGAAGGCATCGGGTAGGGATAGTGTGCAC
TCGCTGAAGGTAATGCCTGTGGTTGGAACGGGCCTGGGGCCTGTGATGGT
GAATAAGGTGGAGGTCGGGAGGAATGGGCGGGTGTTGTTCGCGGGGGATC
TGCTGCAGGTGGGCGGGAGTACCTTGGTCTTGCGAAGAGGGTAA

Synonyms

Publications