jgi.p|Nanoce1779_2|631458, mRNA_6310 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|631458
Unique NamemRNA_6310
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2082
Alignment locationscaffold_15:309827..312070 -

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Properties
Property NameValue
TranscriptId631544
TrackFilteredModels2
ProteinId631458
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:309827..312070 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|631458gene_6310Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|631458mRNA_6310-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6310CDS_6310Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6310 ID=mRNA_6310|Name=jgi.p|Nanoce1779_2|631458|organism=Nannochloropsis oceanica|type=mRNA|length=2082bp
GGCACCATAGCCAAGGCCTCGGCATTGCCCTGCATGGTTGCTGCAAGTGG
TAGCAGTATGGCAAGAGGGGAGCATGGGGTGGAGAAGGAAGGAAGGAGAG
TGAGATGATGTCAACCAAAGAAAGCCGGGGCTGCAAGACGCGACCAATGC
CTACCGCTTTATGAATTATCTAAGGTTGGCGACAGGCATAAGTGGAGAAA
GATGAGACAATGCTTGAGTGGCGAATATCGTACACTTTGCTGTCAAACGT
TGCAAAACGAAGAAGCGTCGCCTAAGCTCATGGACTCATCTGATGACGGC
TGCGGACAGATTGCATCTTGCCTCACCAACTACTCAACCCACAGGCATCC
ATAGAGCAGCACCAGGAGTATTATATCAATAAGTCACTGTGAATTACTGT
TGAAATCCGCATCGTCGCTTTTGCGGAGGGCAACTTTTACCTCCTGCCTC
CCTCCTGCCTCTCCTCGTCCTCCTCCCTCGTCTTCTTCCTATCTTACTTG
CCCAGAATTTTAACACCCCTGGGCCTTTTGAACCCTTCTAAGGCTATCAG
AAGGATATCCCCACCCTGTGGACATCCAGAAGGAAGCATTCGCTAATCTG
CGCGACGCTTCCTCCCGTCGACTGCGTTTAGAAGGCGGAAAGGTTGAGCA
GAGGCAAGAGGGAACGGAGAGCTGGCATTGTGTTTTGCATGGGCTCGAGA
CAGTGAGGGTTTTGCTCTTGTGGTGGAGAATGGATAACATGGACTTCCTG
TCTCGATCCCTGTATGTCCTTTGTTTGGAACAACTCCAGTGAATCAACAA
GCCTGGGCCTTTTTACGCCTCTTGTTCCTAGACATACCGGGTCAATAGTA
TGTACTATCCATTGAAATATGGCGGTGACAGTGACAGCTACACTTTGTGC
TACGCTTTAAGAAGCTGAGATGTTTACCGGCCCGGTCCATGCGGAATGAT
CGGCGAGACGAAGGACCTCCTCCTCTTTCCGAGCCCACCAAGAGACCAAA
TAGCAGCGGCATCGATGTCGCAAGTCTGTGGCATCCCCCCTCCCAGATCG
TGCGGATGGTTGACACGAGTAGTAGGACCCACAGTGGTCCGAAATCCAAG
CGCAACGGGGCCACGGGGAGAGCAAGTGACCTTCCTCGCCCCCCTCCTTC
CCGCCCTCTTCCCGCCATTGCAATCAAGAGCCTCTCTACACTTTTCCCTC
CTGCGTACCAACAGACCTAATCTCTCTTTTTCCTTCCTCACATTGTCCTC
TTTCCCTTCCTCCTATCTTCCCACCAGCACAGCACAGCAGCCCCCAAAGC
GCAAGTATATATAAATGATTAACCGATCGATTTTTGAGGACCGATTGACG
TTCAAAGAGACGACTATCACGGGACATACGGCCGTGAGTCGACTTGTAGC
TAGATTCAATGCCTTTGTCAACGCCGCTGCGGTTGCAACTGGTGGTGGAG
GTGGTGGAGGTGGAACACGGGAAGAGGGGGGAGAGGAGGGAGGAAGGGAG
TTGGCGTTCGAGCAGTATGACGCCTTAATGAAGGAGTTGATGTTGATGCG
GCTGGAGATTGACAAGGCCGAAGCCATCTTTGCGGCTTTGCCCCGAGAGA
GAGATGAATTCGACGCCTACGCGGAGAGAATCGCTGAACAAACCGCCCGA
GCCGCAGCCGAGATAGCGGCGCTAAAAGAAGAATTAAACACTGAGCGTGC
CGTGCGATTGCAAAGAGAGGACTACGAGGTTTTGGGCAGACTTGCCAATC
AATTTCCAGCCAAAGCCCGGACCGCAGCTGGGCAAGCGAAGGTAGCAGCA
GAAATCGGGGGGATGGAAGAGGAAAAGGCCCGACTGGTGGATGCAGTGGC
ACTCAGGAAAAGACAGTTAGCGTTTGTTTTGAATGCTGTGAGGGATTTAA
GGGAGGGATTAGATTATGATTTGAGGACGGAGGAGGAGAAGGAACGGTGG
TTGACGGAGCGGGCGGCTGCGCGGGCTAAGAGGGAAGAGGGAGGTGGGGG
TGGAGAAGGAGGAGGAGGAGGGGGGGAGGAGGTTGAAGGAGGGGAGGAGG
AAGAGGGTGGGGAGGAGATGCAGACAGACTAA
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protein sequence of jgi.p|Nanoce1779_2|631458

>mRNA_6310-protein ID=mRNA_6310-protein|Name=jgi.p|Nanoce1779_2|631458|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MINRSIFEDRLTFKETTITGHTAVSRLVARFNAFVNAAAVATGGGGGGGG
TREEGGEEGGRELAFEQYDALMKELMLMRLEIDKAEAIFAALPRERDEFD
AYAERIAEQTARAAAEIAALKEELNTERAVRLQREDYEVLGRLANQFPAK
ARTAAGQAKVAAEIGGMEEEKARLVDAVALRKRQLAFVLNAVRDLREGLD
YDLRTEEEKERWLTERAAARAKREEGGGGGEGGGGGGEEVEGGEEEEGGE
EMQTD*
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mRNA from alignment at scaffold_15:309827..312070-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6310 ID=mRNA_6310|Name=jgi.p|Nanoce1779_2|631458|organism=Nannochloropsis oceanica|type=mRNA|length=2244bp|location=Sequence derived from alignment at scaffold_15:309827..312070- (Nannochloropsis oceanica)
GGCACCATAGCCAAGGCCTCGGCATTGCCCTGCATGGTTGCTGCAAGTGG
TAGCAGTATGGCAAGAGGGGAGCATGGGGTGGAGAAGGAAGGAAGGAGAG
TGAGATGATGTCAACCAAAGAAAGCCGGGGCTGCAAGACGCGACCAATGC
CTACCGCTTTATGAATTATCTAAGGTTGGCGACAGGCATAAGTGGAGAAA
GATGAGACAATGCTTGAGTGGCGAATATCGTACACTTTGCTGTCAAACGT
TGCAAAACGAAGAAGCGTCGCCTAAGCTCATGGACTCATCTGATGACGGC
TGCGGACAGATTGCATCTTGCCTCACCAACTACTCAACCCACAGGCATCC
ATAGAGCAGCACCAGGAGTATTATATCAATAAGTCACTGTGAATTACTGT
TGAAATCCGCATCGTCGCTTTTGCGGAGGGCAACTTTTACCTCCTGCCTC
CCTCCTGCCTCTCCTCGTCCTCCTCCCTCGTCTTCTTCCTATCTTACTTG
CCCAGAATTTTAACACCCCTGGGCCTTTTGAACCCTTCTAAGGCTATCAG
AAGGATATCCCCACCCTGTGGACATCCAGAAGGAAGCATTCGCTAATCTG
CGCGACGCTTCCTCCCGTCGACTGCGTTTAGAAGGCGGAAAGGTTGAGCA
GAGGCAAGAGGGAACGGAGAGCTGGCATTGTGTTTTGCATGGGCTCGAGA
CAGTGAGGGTTTTGCTCTTGTGGTGGAGAATGGATAACATGGACTTCCTG
TCTCGATCCCTGTATGTCCTTTGTTTGGAACAACTCCAGTGAATCAACAA
GCCTGGGCCTTTTTACGCCTCTTGTTCCTAGACATACCGGGTCAATAGTA
TGTACTATCCATTGAAATATGGCGGTGACAGTGACAGCTACACTTTGTGC
TACGCTTTAAGAAGCTGAGATGTTTACCGGCCCGGTCCATGCGGAATGAT
CGGCGAGACGAAGGACCTCCTCCTCTTTCCGAGCCCACCAAGAGACCAAA
TAGCAGCGGCATCGATGTCGCAAGTCTGTGGCATCCCCCCTCCCAGATCG
TGCGGATGGTTGACACGAGTAGTAGGACCCACAGTGGTCCGAAATCCAAG
CGCAACGGGGCCACGGGGAGAGCAAGTGACCTTCCTCGCCCCCCTCCTTC
CCGCCCTCTTCCCGCCATTGCAATCAAGAGCCTCTCTACACTTTTCCCTC
CTGCGTACCAACAGACCTAATCTCTCTTTTTCCTTCCTCACATTGTCCTC
TTTCCCTTCCTCCTATCTTCCCACCAGCACAGCACAGCAGCCCCCAAAGC
GCAAGTATATATAAATGATTAACCGATCGATTTTTGAGGACCGATTGACG
TTCAAAGAGACGACTATCACGGGACATACGGCCGTGAGTCGACTTGTAGC
TAGATTCAATGCCTTTGTCAACGCCGCTGCGGTTGCAACTGGTGGTGGAG
GTGGTGGAGGTGGAACACGGGAAGAGGGGGGAGAGGAGGGAGGAAGGGAG
TTGGCGTTCGAGCAGTATGACGCCTTAATGAAGGAGTTGATGTTGATGCG
GCTGGAGGTAAGACGGAAAGAGGTGTGAGAGGGGTGGCTGGATCAATGGG
CTGGCTTGGGCTCAATTCGTGCCGCTGCTGGTATACTGAAGACACCAACG
AATAGGAGGGAGCCTCATCCACACATCCTTCCCTCCTTCCCTCCCTCCTT
CCATCCTTCCCACCGTTAGATTGACAAGGCCGAAGCCATCTTTGCGGCTT
TGCCCCGAGAGAGAGATGAATTCGACGCCTACGCGGAGAGAATCGCTGAA
CAAACCGCCCGAGCCGCAGCCGAGATAGCGGCGCTAAAAGAAGAATTAAA
CACTGAGCGTGCCGTGCGATTGCAAAGAGAGGACTACGAGGTTTTGGGCA
GACTTGCCAATCAATTTCCAGCCAAAGCCCGGACCGCAGCTGGGCAAGCG
AAGGTAGCAGCAGAAATCGGGGGGATGGAAGAGGAAAAGGCCCGACTGGT
GGATGCAGTGGCACTCAGGAAAAGACAGTTAGCGTTTGTTTTGAATGCTG
TGAGGGATTTAAGGGAGGGATTAGATTATGATTTGAGGACGGAGGAGGAG
AAGGAACGGTGGTTGACGGAGCGGGCGGCTGCGCGGGCTAAGAGGGAAGA
GGGAGGTGGGGGTGGAGAAGGAGGAGGAGGAGGGGGGGAGGAGGTTGAAG
GAGGGGAGGAGGAAGAGGGTGGGGAGGAGATGCAGACAGACTAA
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Coding sequence (CDS) from alignment at scaffold_15:309827..312070-

>mRNA_6310 ID=mRNA_6310|Name=jgi.p|Nanoce1779_2|631458|organism=Nannochloropsis oceanica|type=CDS|length=1536bp|location=Sequence derived from alignment at scaffold_15:309827..312070- (Nannochloropsis oceanica)
ATTGACAAGGCCGAAGCCATCTTTGCGGCTTTGCCCCGAGAGAGAGATGA
ATTCGACGCCTACGCGGAGAGAATCGCTGAACAAACCGCCCGAGCCGCAG
CCGAGATAGCGGCGCTAAAAGAAGAATTAAACACTGAGCGTGCCGTGCGA
TTGCAAAGAGAGGACTACGAGGTTTTGGGCAGACTTGCCAATCAATTTCC
AGCCAAAGCCCGGACCGCAGCTGGGCAAGCGAAGGTAGCAGCAGAAATCG
GGGGGATGGAAGAGGAAAAGGCCCGACTGGTGGATGCAGTGGCACTCAGG
AAAAGACAGTTAGCGTTTGTTTTGAATGCTGTGAGGGATTTAAGGGAGGG
ATTAGATTATGATTTGAGGACGGAGGAGGAGAAGGAACGGTGGTTGACGG
AGCGGGCGGCTGCGCGGGCTAAGAGGGAAGAGGGAGGTGGGGGTGGAGAA
GGAGGAGGAGGAGGGGGGGAGGAGGTTGAAGGAGGGGAGGAGGAAGAGGG
TGGGGAGGAGATGCAGACAGACTAAATGATTAACCGATCGATTTTTGAGG
ACCGATTGACGTTCAAAGAGACGACTATCACGGGACATACGGCCGTGAGT
CGACTTGTAGCTAGATTCAATGCCTTTGTCAACGCCGCTGCGGTTGCAAC
TGGTGGTGGAGGTGGTGGAGGTGGAACACGGGAAGAGGGGGGAGAGGAGG
GAGGAAGGGAGTTGGCGTTCGAGCAGTATGACGCCTTAATGAAGGAGTTG
ATGTTGATGCGGCTGGAGATTGACAAGGCCGAAGCCATCTTTGCGGCTTT
GCCCCGAGAGAGAGATGAATTCGACGCCTACGCGGAGAGAATCGCTGAAC
AAACCGCCCGAGCCGCAGCCGAGATAGCGGCGCTAAAAGAAGAATTAAAC
ACTGAGCGTGCCGTGCGATTGCAAAGAGAGGACTACGAGGTTTTGGGCAG
ACTTGCCAATCAATTTCCAGCCAAAGCCCGGACCGCAGCTGGGCAAGCGA
AGGTAGCAGCAGAAATCGGGGGGATGGAAGAGGAAAAGGCCCGACTGGTG
GATGCAGTGGCACTCAGGAAAAGACAGTTAGCGTTTGTTTTGAATGCTGT
GAGGGATTTAAGGGAGGGATTAGATTATGATTTGAGGACGGAGGAGGAGA
AGGAACGGTGGTTGACGGAGCGGGCGGCTGCGCGGGCTAAGAGGGAAGAG
GGAGGTGGGGGTGGAGAAGGAGGAGGAGGAGGGGGGGAGGAGGTTGAAGG
AGGGGAGGAGGAAGAGGGTGGGGAGGAGATGCAGACAGACTAAATGATTA
ACCGATCGATTTTTGAGGACCGATTGACGTTCAAAGAGACGACTATCACG
GGACATACGGCCGTGAGTCGACTTGTAGCTAGATTCAATGCCTTTGTCAA
CGCCGCTGCGGTTGCAACTGGTGGTGGAGGTGGTGGAGGTGGAACACGGG
AAGAGGGGGGAGAGGAGGGAGGAAGGGAGTTGGCGTTCGAGCAGTATGAC
GCCTTAATGAAGGAGTTGATGTTGATGCGGCTGGAG
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Synonyms
Publications