jgi.p|Nanoce1779_2|635963, mRNA_631 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|635963
Unique NamemRNA_631
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length630
Alignment locationscaffold_2:52091..53016 +

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Properties
Property NameValue
TranscriptId636049
TrackFilteredModels2
ProteinId635963
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:52091..53016 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|635963gene_631Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|635963mRNA_631-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_631CDS_631Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_631 ID=mRNA_631|Name=jgi.p|Nanoce1779_2|635963|organism=Nannochloropsis oceanica|type=mRNA|length=630bp
ATGGTCATGGTACTCGGCTCGTCTGTGTTGTTTGCGCGTGTGGGGCGTAT
TTGTGTTAGTGGGGAGCGTCAGAATGTCCGTACACTCCTTACCTCCGCGG
CTGCCTTTGGAGCCGAGGTCCTGGTTGTAGGTCAGCCGGGCTTTGACGAA
CTCTCCCACGTCCCGAAGCGACTCGCGACTGCCTTTGCTGCTGTGGAGGG
AGAGGCAGAGCCACCGCATCCTCCCACGCCTCTATATCGACGCTTTGACG
GGACATTGGAGGAATGCCGTGATTACTTGCATGCTCAAAATATACAAGTT
TGGGGAATAGAGATTGGAGAGACGGCGGTAAATGTGGAGGAGGCCCCATG
GGACAAAGGGGGCGGAGGAGGAGGAGGAGGAGGAGTGGCGTTACTGCTCG
GGAATGAGGGAACGGGCATGTCTTCAAGGCAGGCAAGGGTTTGCGATGGA
TTCATGTATATAAGCCAGTATGGCCAGGGCACCGCGTCGTTAAATGTGGC
AGTTGCAGGGAGCATCGTCATGCATCGCTATAGCGTGTGGGCGGCCGCCA
AACGACAACAAGAGAGAAAAATCAAAGAGGAGATGAAGGAGAAGGGAAAT
GAGATGGAGGAGAGGAGATATAAACCATAG
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protein sequence of jgi.p|Nanoce1779_2|635963

>mRNA_631-protein ID=mRNA_631-protein|Name=jgi.p|Nanoce1779_2|635963|organism=Nannochloropsis oceanica|type=polypeptide|length=210bp
MVMVLGSSVLFARVGRICVSGERQNVRTLLTSAAAFGAEVLVVGQPGFDE
LSHVPKRLATAFAAVEGEAEPPHPPTPLYRRFDGTLEECRDYLHAQNIQV
WGIEIGETAVNVEEAPWDKGGGGGGGGGVALLLGNEGTGMSSRQARVCDG
FMYISQYGQGTASLNVAVAGSIVMHRYSVWAAAKRQQERKIKEEMKEKGN
EMEERRYKP*
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mRNA from alignment at scaffold_2:52091..53016+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_631 ID=mRNA_631|Name=jgi.p|Nanoce1779_2|635963|organism=Nannochloropsis oceanica|type=mRNA|length=926bp|location=Sequence derived from alignment at scaffold_2:52091..53016+ (Nannochloropsis oceanica)
ATGGTCATGGTACTCGGCTCGTCTGTGTTGTTTGCGCGTGTGGGGCGTAT
TTGTGTTAGTGGGGAGGTTGCAAAACTAACCCTCAATTACCAGTCTTAAA
CAACCTGAAACCACTACTACTATAAACACACGACAGTCATTGCTATCGTC
CCATCGCCTACGCGGTACGGAAATGGAGCCTGTCGTCGTAAATGGCGAAA
CCCACCCCATCTCATCCGAGTCAATGTCTCCACCATCGCCACGCCTCTTC
CTTCTTCTACACCACATCTCCAAGCGTCAGAATGTCCGTACACTCCTTAC
CTCCGCGGCTGCCTTTGGAGCCGAGGTCCTGGTTGTAGGTCAGCCGGGCT
TTGACGAACTCTCCCACGTCCCGAAGCGACTCGCGACTGCCTTTGCTGCT
GTGGAGGGAGAGGCAGAGCCACCGCATCCTCCCACGCCTCTATATCGACG
CTTTGACGGGACATTGGAGGAATGCCGTGATTACTTGCATGCTCAAAATA
TACAAGTTTGGGGAATAGAGATTGGAGAGACGGCGGTAAATGTGGAGGAG
GCCCCATGGGACAAAGGGGGCGGAGGAGGAGGAGGAGGAGGAGTGGCGTT
ACTGCTCGGGAATGAGGGAACGGGCATGTCTTCAAGGCAGGCAAGGGTTT
GCGATGGATTCATGTATATAAGCCAGTATGGCCAGGTACGTGTTTACTTT
TCTCCAATCTCCCTCTTGCTTTTATCTCACCTCTCTCCTTCCCTTCCTCC
TTCTCTCCCTGCTCCTTTCGCAGGGCACCGCGTCGTTAAATGTGGCAGTT
GCAGGGAGCATCGTCATGCATCGCTATAGCGTGTGGGCGGCCGCCAAACG
ACAACAAGAGAGAAAAATCAAAGAGGAGATGAAGGAGAAGGGAAATGAGA
TGGAGGAGAGGAGATATAAACCATAG
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Coding sequence (CDS) from alignment at scaffold_2:52091..53016+

>mRNA_631 ID=mRNA_631|Name=jgi.p|Nanoce1779_2|635963|organism=Nannochloropsis oceanica|type=CDS|length=1890bp|location=Sequence derived from alignment at scaffold_2:52091..53016+ (Nannochloropsis oceanica)
ATGGTCATGGTACTCGGCTCGTCTGTGTTGTTTGCGCGTGTGGGGCGTAT
TTGTGTTAGTGGGGAGCGTCAGAATGTCCGTACACTCCTTACCTCCGCGG
CTGCCTTTGGAGCCGAGGTCCTGGTTGTAGGTCAGCCGGGCTTTGACGAA
CTCTCCCACGTCCCGAAGCGACTCGCGACTGCCTTTGCTGCTGTGGAGGG
AGAGGCAGAGCCACCGCATCCTCCCACGCCTCTATATCGACGCTTTGACG
GGACATTGGAGGAATGCCGTGATTACTTGCATGCTCAAAATATACAAGTT
TGGGGAATAGAGATTGGAGAGACGGCGGTAAATGTGGAGGAGGCCCCATG
GGACAAAGGGGGCGGAGGAGGAGGAGGAGGAGGAGTGGCGTTACTGCTCG
GGAATGAGGGAACGGGCATGTCTTCAAGGCAGGCAAGGGTTTGCGATGGA
TTCATGTATATAAGCCAGTATGGCCAGGGCACCGCGTCGTTAAATGTGGC
AGTTGCAGGGAGCATCGTCATGCATCGCTATAGCGTGTGGGCGGCCGCCA
AACGACAACAAGAGAGAAAAATCAAAGAGGAGATGAAGGAGAAGGGAAAT
GAGATGGAGGAGAGGAGATATAAACCATAGATGGTCATGGTACTCGGCTC
GTCTGTGTTGTTTGCGCGTGTGGGGCGTATTTGTGTTAGTGGGGAGCGTC
AGAATGTCCGTACACTCCTTACCTCCGCGGCTGCCTTTGGAGCCGAGGTC
CTGGTTGTAGGTCAGCCGGGCTTTGACGAACTCTCCCACGTCCCGAAGCG
ACTCGCGACTGCCTTTGCTGCTGTGGAGGGAGAGGCAGAGCCACCGCATC
CTCCCACGCCTCTATATCGACGCTTTGACGGGACATTGGAGGAATGCCGT
GATTACTTGCATGCTCAAAATATACAAGTTTGGGGAATAGAGATTGGAGA
GACGGCGGTAAATGTGGAGGAGGCCCCATGGGACAAAGGGGGCGGAGGAG
GAGGAGGAGGAGGAGTGGCGTTACTGCTCGGGAATGAGGGAACGGGCATG
TCTTCAAGGCAGGCAAGGGTTTGCGATGGATTCATGTATATAAGCCAGTA
TGGCCAGGGCACCGCGTCGTTAAATGTGGCAGTTGCAGGGAGCATCGTCA
TGCATCGCTATAGCGTGTGGGCGGCCGCCAAACGACAACAAGAGAGAAAA
ATCAAAGAGGAGATGAAGGAGAAGGGAAATGAGATGGAGGAGAGGAGATA
TAAACCATAGATGGTCATGGTACTCGGCTCGTCTGTGTTGTTTGCGCGTG
TGGGGCGTATTTGTGTTAGTGGGGAGCGTCAGAATGTCCGTACACTCCTT
ACCTCCGCGGCTGCCTTTGGAGCCGAGGTCCTGGTTGTAGGTCAGCCGGG
CTTTGACGAACTCTCCCACGTCCCGAAGCGACTCGCGACTGCCTTTGCTG
CTGTGGAGGGAGAGGCAGAGCCACCGCATCCTCCCACGCCTCTATATCGA
CGCTTTGACGGGACATTGGAGGAATGCCGTGATTACTTGCATGCTCAAAA
TATACAAGTTTGGGGAATAGAGATTGGAGAGACGGCGGTAAATGTGGAGG
AGGCCCCATGGGACAAAGGGGGCGGAGGAGGAGGAGGAGGAGGAGTGGCG
TTACTGCTCGGGAATGAGGGAACGGGCATGTCTTCAAGGCAGGCAAGGGT
TTGCGATGGATTCATGTATATAAGCCAGTATGGCCAGGGCACCGCGTCGT
TAAATGTGGCAGTTGCAGGGAGCATCGTCATGCATCGCTATAGCGTGTGG
GCGGCCGCCAAACGACAACAAGAGAGAAAAATCAAAGAGGAGATGAAGGA
GAAGGGAAATGAGATGGAGGAGAGGAGATATAAACCATAG
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Synonyms
Publications