jgi.p|Nanoce1779_2|594535, mRNA_6309 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|594535
Unique Name	mRNA_6309
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1263
Alignment location	scaffold_15:306117..307379 -

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Properties


Property Name	Value
TranscriptId	594621
Track	FilteredModels2
ProteinId	594535

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:306117..307379 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594535	gene_6309	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594535	mRNA_6309-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6309	CDS_6309	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:306117..307379-
coding sequence from alignment at scaffold_15:306117..307379-

mRNA sequence

>mRNA_6309 ID=mRNA_6309|Name=jgi.p|Nanoce1779_2|594535|organism=Nannochloropsis oceanica|type=mRNA|length=1263bp
GGGGGCTCCGTCGTCGGGGGTTGGGAGCGGGGGAGGGAGGGAGGGAGGGA
CGGGGATGGGTTTCGTTAGGGTGAGCTCTCAATCGATGCAGCAGTTGGCA
TCCCAGGCCGCGGCGGCGGCGAATTTGTGGGCAACGGCCAAAGATAGGGA
AGACGAAGAGAGGGAGGAAGAGAGGGGTAGCCACGGGAAGGTGTATGCGC
GGGACTACAACGCCAGTTGGTCGACCCAATTTCTCAACTCGGTGGTGAGG
CAATTGCAGGCACTGCAGCGGGACCGGAAGATGACCATCGCGCGGTGTTT
TGTCGGGGTGGGCACGGGGTTGGTGATTGGCTTGGCCTTTCGGGGACCCA
AGGGACAGGAGTTTGCACAGAGCGGCATCACGGACACGCTGGGCTTAATG
CTAACGAGCGCCATTTTCCTGTTGATAACCAACTTTTTCCAGGTGGCTTT
CACCTTGCCGGGGGAATTGCAGGTGTTCTTCCGCGAGAGGATGGCGGGCG
TGAACCGGGTTAGCACGTACTACGTGGGTCATGTGGTGCAAAACTTCGTC
TTTCTCTTCTTTTGGTCCTTAGCGTTTTGTTTCGCGACCTTCCCGTTGGC
CTTGCCCGGCTTGGGGTGGGTAAAATGGGCCACGATCTTCGGCATTGTGT
GCCTGAGCAACGCGGCGAGCACGGCGTTGGGATATGTGGTGGCAGTGGCG
ACGCGGAACGAGGCAGTGGCTCTGGCGCTTGTGCCTACGGTGAGCCTGCC
CATGGCGTTATTTGCCGGCTTCCTCGTAGAGTTGCGAACGGTTCCGGTGT
TCTTGCGCTGGCTCCAGCATTTGTCGATCGTCAAGTACACGCTGCACGCC
TTGATACTGGTGACGTTTGAAGGACAGGACATTCGGTGTCCGGTCTCGGC
GTCAGGGGAGGAGGGAGGGGGGGAACGACGGGGAGAAGGCTTCCCGGGAG
GGGGGCGGTGCATCTACCCGAGTCTGGAGTCGGTGTTGCAGCGAGTGTCT
GCGGGGGAACATACACTGCGAGAGAATTTGGTGATCCTGGGAGGATTGGG
CGCTGGGCTCCTGGTGCTGGGGTACTTGATCTTGGCGCGGCATGCTGTCA
CGGTTAAGGTCCGGTAGGATTATCGGGAGGGAGGACAACATGATTTAGCA
CGAGAAAGATGATGGGCGATAAATGGGGATGGGAGGGAGGGAGGGAGAGA
GTGTAACGGCCGACCAAACCGCCGGCAAGGGGGAGTGAGAGCCTCTTTCT
TGCACGCGACGGA

protein sequence of jgi.p|Nanoce1779_2|594535

>mRNA_6309-protein ID=mRNA_6309-protein|Name=jgi.p|Nanoce1779_2|594535|organism=Nannochloropsis oceanica|type=polypeptide|length=354bp
MGFVRVSSQSMQQLASQAAAAANLWATAKDREDEEREEERGSHGKVYARD
YNASWSTQFLNSVVRQLQALQRDRKMTIARCFVGVGTGLVIGLAFRGPKG
QEFAQSGITDTLGLMLTSAIFLLITNFFQVAFTLPGELQVFFRERMAGVN
RVSTYYVGHVVQNFVFLFFWSLAFCFATFPLALPGLGWVKWATIFGIVCL
SNAASTALGYVVAVATRNEAVALALVPTVSLPMALFAGFLVELRTVPVFL
RWLQHLSIVKYTLHALILVTFEGQDIRCPVSASGEEGGGERRGEGFPGGG
RCIYPSLESVLQRVSAGEHTLRENLVILGGLGAGLLVLGYLILARHAVTV
KVR*

mRNA from alignment at scaffold_15:306117..307379-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6309 ID=mRNA_6309|Name=jgi.p|Nanoce1779_2|594535|organism=Nannochloropsis oceanica|type=mRNA|length=1263bp|location=Sequence derived from alignment at scaffold_15:306117..307379- (Nannochloropsis oceanica)
GGGGGCTCCGTCGTCGGGGGTTGGGAGCGGGGGAGGGAGGGAGGGAGGGA
CGGGGATGGGTTTCGTTAGGGTGAGCTCTCAATCGATGCAGCAGTTGGCA
TCCCAGGCCGCGGCGGCGGCGAATTTGTGGGCAACGGCCAAAGATAGGGA
AGACGAAGAGAGGGAGGAAGAGAGGGGTAGCCACGGGAAGGTGTATGCGC
GGGACTACAACGCCAGTTGGTCGACCCAATTTCTCAACTCGGTGGTGAGG
CAATTGCAGGCACTGCAGCGGGACCGGAAGATGACCATCGCGCGGTGTTT
TGTCGGGGTGGGCACGGGGTTGGTGATTGGCTTGGCCTTTCGGGGACCCA
AGGGACAGGAGTTTGCACAGAGCGGCATCACGGACACGCTGGGCTTAATG
CTAACGAGCGCCATTTTCCTGTTGATAACCAACTTTTTCCAGGTGGCTTT
CACCTTGCCGGGGGAATTGCAGGTGTTCTTCCGCGAGAGGATGGCGGGCG
TGAACCGGGTTAGCACGTACTACGTGGGTCATGTGGTGCAAAACTTCGTC
TTTCTCTTCTTTTGGTCCTTAGCGTTTTGTTTCGCGACCTTCCCGTTGGC
CTTGCCCGGCTTGGGGTGGGTAAAATGGGCCACGATCTTCGGCATTGTGT
GCCTGAGCAACGCGGCGAGCACGGCGTTGGGATATGTGGTGGCAGTGGCG
ACGCGGAACGAGGCAGTGGCTCTGGCGCTTGTGCCTACGGTGAGCCTGCC
CATGGCGTTATTTGCCGGCTTCCTCGTAGAGTTGCGAACGGTTCCGGTGT
TCTTGCGCTGGCTCCAGCATTTGTCGATCGTCAAGTACACGCTGCACGCC
TTGATACTGGTGACGTTTGAAGGACAGGACATTCGGTGTCCGGTCTCGGC
GTCAGGGGAGGAGGGAGGGGGGGAACGACGGGGAGAAGGCTTCCCGGGAG
GGGGGCGGTGCATCTACCCGAGTCTGGAGTCGGTGTTGCAGCGAGTGTCT
GCGGGGGAACATACACTGCGAGAGAATTTGGTGATCCTGGGAGGATTGGG
CGCTGGGCTCCTGGTGCTGGGGTACTTGATCTTGGCGCGGCATGCTGTCA
CGGTTAAGGTCCGGTAGGATTATCGGGAGGGAGGACAACATGATTTAGCA
CGAGAAAGATGATGGGCGATAAATGGGGATGGGAGGGAGGGAGGGAGAGA
GTGTAACGGCCGACCAAACCGCCGGCAAGGGGGAGTGAGAGCCTCTTTCT
TGCACGCGACGGA

Coding sequence (CDS) from alignment at scaffold_15:306117..307379-

>mRNA_6309 ID=mRNA_6309|Name=jgi.p|Nanoce1779_2|594535|organism=Nannochloropsis oceanica|type=CDS|length=1062bp|location=Sequence derived from alignment at scaffold_15:306117..307379- (Nannochloropsis oceanica)
ATGGGTTTCGTTAGGGTGAGCTCTCAATCGATGCAGCAGTTGGCATCCCA
GGCCGCGGCGGCGGCGAATTTGTGGGCAACGGCCAAAGATAGGGAAGACG
AAGAGAGGGAGGAAGAGAGGGGTAGCCACGGGAAGGTGTATGCGCGGGAC
TACAACGCCAGTTGGTCGACCCAATTTCTCAACTCGGTGGTGAGGCAATT
GCAGGCACTGCAGCGGGACCGGAAGATGACCATCGCGCGGTGTTTTGTCG
GGGTGGGCACGGGGTTGGTGATTGGCTTGGCCTTTCGGGGACCCAAGGGA
CAGGAGTTTGCACAGAGCGGCATCACGGACACGCTGGGCTTAATGCTAAC
GAGCGCCATTTTCCTGTTGATAACCAACTTTTTCCAGGTGGCTTTCACCT
TGCCGGGGGAATTGCAGGTGTTCTTCCGCGAGAGGATGGCGGGCGTGAAC
CGGGTTAGCACGTACTACGTGGGTCATGTGGTGCAAAACTTCGTCTTTCT
CTTCTTTTGGTCCTTAGCGTTTTGTTTCGCGACCTTCCCGTTGGCCTTGC
CCGGCTTGGGGTGGGTAAAATGGGCCACGATCTTCGGCATTGTGTGCCTG
AGCAACGCGGCGAGCACGGCGTTGGGATATGTGGTGGCAGTGGCGACGCG
GAACGAGGCAGTGGCTCTGGCGCTTGTGCCTACGGTGAGCCTGCCCATGG
CGTTATTTGCCGGCTTCCTCGTAGAGTTGCGAACGGTTCCGGTGTTCTTG
CGCTGGCTCCAGCATTTGTCGATCGTCAAGTACACGCTGCACGCCTTGAT
ACTGGTGACGTTTGAAGGACAGGACATTCGGTGTCCGGTCTCGGCGTCAG
GGGAGGAGGGAGGGGGGGAACGACGGGGAGAAGGCTTCCCGGGAGGGGGG
CGGTGCATCTACCCGAGTCTGGAGTCGGTGTTGCAGCGAGTGTCTGCGGG
GGAACATACACTGCGAGAGAATTTGGTGATCCTGGGAGGATTGGGCGCTG
GGCTCCTGGTGCTGGGGTACTTGATCTTGGCGCGGCATGCTGTCACGGTT
AAGGTCCGGTAG

Synonyms

Publications