jgi.p|Nanoce1779_2|594534, mRNA_6308 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594534
Unique NamemRNA_6308
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1569
Alignment locationscaffold_15:304693..306261 -

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Properties
Property NameValue
TranscriptId594620
TrackFilteredModels2
ProteinId594534
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:304693..306261 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594534gene_6308Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594534mRNA_6308-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6308CDS_6308Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6308 ID=mRNA_6308|Name=jgi.p|Nanoce1779_2|594534|organism=Nannochloropsis oceanica|type=mRNA|length=1569bp
ATTATCGGGAGGGAGGACAACATGATTTAGCACGAGAAAGATGATGGGCG
ATAAATGGGGATGGGAGGGAGGGAGGGAGAGAGTGTAACGGCCGACCAAA
CCGCCGGCAAGGGGGAGTGAGAGCCTCTTTCTTGCACGCGACGGACTGGC
TATCAAGAGTATACTTCCTCCCCCCCCCCCCAAATAATTCTGCCTCTGTA
TCGTCGGTCTAGTCTTGAGACATAGTGTGAGTGCTTCATATTTGTTGGAT
CAAAACCTGTCACTTTCCTCGAGTCGAAGAATGCCGGTGCGAGAGATGGT
GTCCGTCTGCCTGTCGTTGGAGAGGGGCTGAGGGAGTGAGAGAGCGAGGG
AGCGAGGGAGGGCAGGAGGGTGTGGGCTGAGGCAGTTTTTGGAATTCTGT
GTGTCTGCCTACAAGAGGGAGGGGGGGGGATGGGGAACGAGTGAAGGGGT
GAAGGGTTCGATGAAGGGAGAGAAAGGGAACGAATGGGAGAGAACGGAAG
GGAGGAAGGAGAGGAGGAGGGAGGAAGAGAGAGAGAGTGAGAGGATTTGG
AGGGAAAGAGGGAATATGTACAGATACATGTGTAACGGGGCGATTTTTCC
TCCCCACACGGAAGTGGGGGTGTTGAATGTGGGGGCGTTTTAATTTGAGT
AGTAGGGAAGAGAGGTTGGGAAAGTATAGCTCAGAGGAGACGGAGGAGAA
GCAGCTGCACTGAAAATGGCAGTGCCATCCTTCCGTTCTTTACATGTTTA
TTTCTGCTGCAGCGGTTGTGACAGTAGCAGCAGCAGCAGCGGCGGCGGTG
GCAGCAGCAGCGACAGTAGCAGGAACAGCTGAAACAGCAGCAGCAGAAGC
AGCAGCAGAGAAGGCACATATGAATGTAGGGCCTCAACAGGGGCGAAGGA
AAAGCCCGACGAGGAAATCAGAAATTAGACGCTCCCCACATCTTGAAGTA
CAAGAATGCAAAGAAATTCCGATGGATGGAAAGGGGAATGGAACCAGGGA
GGCGTAGGAAAGAGGGCTTGAAAGTGAGGGATGGAGAACGCGACGACGAC
GCCGTAATTGGAATAACATCGACAACAACAAGAACAACATCGACACTATC
GACAACACCGACAACATCGACAACATCGACAACATCGACGACAAGAACAA
CAACAATAACAATTAAAATGATAATAGTGATAATTACTTTTCTAAATTAT
AAATGAATGAGAACAATAGAAGCGCCAGGACGAAGGGTGGAGGGAGGGGG
AAAACGTCAAAATTCAACATCAAAGGATGAGAGAATGATGATATGTGTGT
GTGAGAAAGAGACGGAGAGCGAACGAGGGAGAGAAATGTTGAGATAAAGA
AGAATCCTGCCTGCCGTCCATTGATTTGTCTTGTCCGTATTGCTATCGTT
TATGCTTCCTATTCGCTTCGCAGCTCTCCCATCAGCCAGAGAGGCAGGGA
TGCACTCTCCGAGCACACGTCATACTACGTTTTATCTTTCTGATGCTGGA
AAGATTTGGGGCCCGGCTTGGTATGGACGAAGATAGGCGTTCCGAAGCAC
AAAGAAAAACAAGGTGGGA
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protein sequence of jgi.p|Nanoce1779_2|594534

>mRNA_6308-protein ID=mRNA_6308-protein|Name=jgi.p|Nanoce1779_2|594534|organism=Nannochloropsis oceanica|type=polypeptide|length=88bp
MFISAAAVVTVAAAAAAAVAAAATVAGTAETAAAEAAAEKAHMNVGPQQG
RRKSPTRKSEIRRSPHLEVQECKEIPMDGKGNGTREA*
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mRNA from alignment at scaffold_15:304693..306261-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6308 ID=mRNA_6308|Name=jgi.p|Nanoce1779_2|594534|organism=Nannochloropsis oceanica|type=mRNA|length=1569bp|location=Sequence derived from alignment at scaffold_15:304693..306261- (Nannochloropsis oceanica)
ATTATCGGGAGGGAGGACAACATGATTTAGCACGAGAAAGATGATGGGCG
ATAAATGGGGATGGGAGGGAGGGAGGGAGAGAGTGTAACGGCCGACCAAA
CCGCCGGCAAGGGGGAGTGAGAGCCTCTTTCTTGCACGCGACGGACTGGC
TATCAAGAGTATACTTCCTCCCCCCCCCCCCAAATAATTCTGCCTCTGTA
TCGTCGGTCTAGTCTTGAGACATAGTGTGAGTGCTTCATATTTGTTGGAT
CAAAACCTGTCACTTTCCTCGAGTCGAAGAATGCCGGTGCGAGAGATGGT
GTCCGTCTGCCTGTCGTTGGAGAGGGGCTGAGGGAGTGAGAGAGCGAGGG
AGCGAGGGAGGGCAGGAGGGTGTGGGCTGAGGCAGTTTTTGGAATTCTGT
GTGTCTGCCTACAAGAGGGAGGGGGGGGGATGGGGAACGAGTGAAGGGGT
GAAGGGTTCGATGAAGGGAGAGAAAGGGAACGAATGGGAGAGAACGGAAG
GGAGGAAGGAGAGGAGGAGGGAGGAAGAGAGAGAGAGTGAGAGGATTTGG
AGGGAAAGAGGGAATATGTACAGATACATGTGTAACGGGGCGATTTTTCC
TCCCCACACGGAAGTGGGGGTGTTGAATGTGGGGGCGTTTTAATTTGAGT
AGTAGGGAAGAGAGGTTGGGAAAGTATAGCTCAGAGGAGACGGAGGAGAA
GCAGCTGCACTGAAAATGGCAGTGCCATCCTTCCGTTCTTTACATGTTTA
TTTCTGCTGCAGCGGTTGTGACAGTAGCAGCAGCAGCAGCGGCGGCGGTG
GCAGCAGCAGCGACAGTAGCAGGAACAGCTGAAACAGCAGCAGCAGAAGC
AGCAGCAGAGAAGGCACATATGAATGTAGGGCCTCAACAGGGGCGAAGGA
AAAGCCCGACGAGGAAATCAGAAATTAGACGCTCCCCACATCTTGAAGTA
CAAGAATGCAAAGAAATTCCGATGGATGGAAAGGGGAATGGAACCAGGGA
GGCGTAGGAAAGAGGGCTTGAAAGTGAGGGATGGAGAACGCGACGACGAC
GCCGTAATTGGAATAACATCGACAACAACAAGAACAACATCGACACTATC
GACAACACCGACAACATCGACAACATCGACAACATCGACGACAAGAACAA
CAACAATAACAATTAAAATGATAATAGTGATAATTACTTTTCTAAATTAT
AAATGAATGAGAACAATAGAAGCGCCAGGACGAAGGGTGGAGGGAGGGGG
AAAACGTCAAAATTCAACATCAAAGGATGAGAGAATGATGATATGTGTGT
GTGAGAAAGAGACGGAGAGCGAACGAGGGAGAGAAATGTTGAGATAAAGA
AGAATCCTGCCTGCCGTCCATTGATTTGTCTTGTCCGTATTGCTATCGTT
TATGCTTCCTATTCGCTTCGCAGCTCTCCCATCAGCCAGAGAGGCAGGGA
TGCACTCTCCGAGCACACGTCATACTACGTTTTATCTTTCTGATGCTGGA
AAGATTTGGGGCCCGGCTTGGTATGGACGAAGATAGGCGTTCCGAAGCAC
AAAGAAAAACAAGGTGGGA
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Coding sequence (CDS) from alignment at scaffold_15:304693..306261-

>mRNA_6308 ID=mRNA_6308|Name=jgi.p|Nanoce1779_2|594534|organism=Nannochloropsis oceanica|type=CDS|length=264bp|location=Sequence derived from alignment at scaffold_15:304693..306261- (Nannochloropsis oceanica)
ATGTTTATTTCTGCTGCAGCGGTTGTGACAGTAGCAGCAGCAGCAGCGGC
GGCGGTGGCAGCAGCAGCGACAGTAGCAGGAACAGCTGAAACAGCAGCAG
CAGAAGCAGCAGCAGAGAAGGCACATATGAATGTAGGGCCTCAACAGGGG
CGAAGGAAAAGCCCGACGAGGAAATCAGAAATTAGACGCTCCCCACATCT
TGAAGTACAAGAATGCAAAGAAATTCCGATGGATGGAAAGGGGAATGGAA
CCAGGGAGGCGTAG
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Synonyms
Publications