jgi.p|Nanoce1779_2|530318, mRNA_6307 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|530318
Unique Name	mRNA_6307
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1164
Alignment location	scaffold_15:302743..304214 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	530404
Track	FilteredModels2
ProteinId	530318

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:302743..304214 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|530318	gene_6307	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|530318	mRNA_6307-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6307	CDS_6307	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:302743..304214+
coding sequence from alignment at scaffold_15:302743..304214+

mRNA sequence

>mRNA_6307 ID=mRNA_6307|Name=jgi.p|Nanoce1779_2|530318|organism=Nannochloropsis oceanica|type=mRNA|length=1164bp
ATGTCTACCATCTCCCCTGCACCCGCCCCACCGCCACCGTCCCTGACGTT
CAACCCGCACACCCTCACCGAGCTCGTGGTACCCTCCAAGGATTTTGATA
GCGTCCGTGTCCACGCCATCTCGGACATCCATGTGGACTACAGAAAAAAT
TTGGAACTGTTTAAGCGTTGGTGCAGTAGCAGCAGCAGTGGCAGTTGTAT
TAGTGGTGATATCGCATCCAGCCCCTCTAACGTCCGCGCTGCTCTTGCAG
CGGCCCGTCGCCGTTTCCATGCCACATTCATTGTTGCAGGCAACCATGAC
TTGTGGGTTAGCAGCGCTTTGGCGGAAGAGGGGGTGGTGGATTCTATAGA
TAAACTAACGCGTGGTAAAATCTACACCGGTCCTGTCCTTCTCCAACTTC
CCCGCTCCTCCCCCGATCCCTCCCTCCCTCTCTCGTTTCTCCTGCTTGTG
CCGTTACTCTCGTGGTATCACCCGTCATGGGACACAGAGCCTGACTTACC
CACTGAGGTCCTCGCGGAGCTTTATGATGGCCGTCCTGCTTTCGAGCAAC
GCTGGGCCGACTTTAGATTTTGCAAGTGGCCGGAGGAGGTAGTGGAAAGG
AAAGAGGGAGGGAGGCAGGAGTGGGGGAGTATTACGACGAAGGACAAGGG
AATAGCGGAATGGTTTGCCGAGCAGAATGAAGGATTTTTAAAGGATACCC
GGGTACGCCTGGAAACGAGGGAAGGGGGGAATGAGGGCAGGGCAAAGAAG
AAAGTGGTGGTGATTTCTTTCTCTCATTTCCTTCCGCGGGAGGAACTGTG
TCCGGAGAAACGGTTTTTGATCGAGCCGTTGCTGCCCAAAGTGATTGGAA
GCCAGCCATTGAGAGAGCAAGTGGAGCGGTTGAAGCCTGACTTGCATTTG
TTCGGCCATACGCATATTCCCGTCGACATGGAGGTGGGAGGAATACGGTA
TCTGCAATGGCCCCTTGGGTCGGTGGGGGAGCAGGGACGTCAAACGGGCG
AGATGAGCGTTAAGGGTCCCGTGGTCGTGTTTGATTCCAAAGGCGGTGGA
GGGGTGCAGGGAGAGGTGCCGACGAGGTGGGGGGCGCACTATAAAGAGGA
GGGGAGGGATGTGCTAAACACGGAGCTCGCACCGTGGGTGAAAATGTATT
GGAGTCAACGCTGA

protein sequence of jgi.p|Nanoce1779_2|530318

>mRNA_6307-protein ID=mRNA_6307-protein|Name=jgi.p|Nanoce1779_2|530318|organism=Nannochloropsis oceanica|type=polypeptide|length=388bp
MSTISPAPAPPPPSLTFNPHTLTELVVPSKDFDSVRVHAISDIHVDYRKN
LELFKRWCSSSSSGSCISGDIASSPSNVRAALAAARRRFHATFIVAGNHD
LWVSSALAEEGVVDSIDKLTRGKIYTGPVLLQLPRSSPDPSLPLSFLLLV
PLLSWYHPSWDTEPDLPTEVLAELYDGRPAFEQRWADFRFCKWPEEVVER
KEGGRQEWGSITTKDKGIAEWFAEQNEGFLKDTRVRLETREGGNEGRAKK
KVVVISFSHFLPREELCPEKRFLIEPLLPKVIGSQPLREQVERLKPDLHL
FGHTHIPVDMEVGGIRYLQWPLGSVGEQGRQTGEMSVKGPVVVFDSKGGG
GVQGEVPTRWGAHYKEEGRDVLNTELAPWVKMYWSQR*

mRNA from alignment at scaffold_15:302743..304214+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6307 ID=mRNA_6307|Name=jgi.p|Nanoce1779_2|530318|organism=Nannochloropsis oceanica|type=mRNA|length=1472bp|location=Sequence derived from alignment at scaffold_15:302743..304214+ (Nannochloropsis oceanica)
ATGTCTACCATCTCCCCTGCACCCGCCCCACCGCCACCGTCCCTGACGTT
CAACCCGCACACCCTCACCGAGCTCGTGGTACCCTCCAAGGATTTTGATA
GCGTCCGTGTCCACGCCATCTCGGACATCCATGTGGACTACAGAAAAAAT
TTGGAACTGTTTAAGCGTTGGTGCAGTAGCAGCAGCAGTGGCAGTTGTAT
TAGTGGTACTGCTGGAGACGCGGGCTTTGCCCCGACATCTCTCCATCAGG
AGAAGGAGGAGCGGGTATTTTCTATTTTGATTATCCCAGGTATGCTTCAC
TCAAAAGCTGGAAACCTTTGAAATGCAAGTTTGTCTCCCAATCTCTCTCT
TGCCCTCATCCCTCCGTTCCCTCCTTCCCCCACTTTTTTCGGTCTTGCAC
AGGTGATATCGCATCCAGCCCCTCTAACGTCCGCGCTGCTCTTGCAGCGG
CCCGTCGCCGTTTCCATGCCACATTCATTGTTGCAGGCAACCATGACTTG
TGGGTTAGCAGCGCTTTGGCGGAAGAGGGGGTGGTGGATTCTATAGATAA
ACTAACGTGGTTGCACCAACTAGCAGCGACCGAGGCAGAAGACGATTCGG
AGGACGGGGATGGAGACGAAGAAAAGAAGAGCAGCAGCAGCAGCAGCAGC
AGCAGCTGTATCAACAGGCGTGGTAAAATCTACACCGGTCCTGTCCTTCT
CCAACTTCCCCGCTCCTCCCCCGATCCCTCCCTCCCTCTCTCGTTTCTCC
TGCTTGTGCCGTTACTCTCGTGGTATCACCCGTCATGGGACACAGAGCCT
GACTTACCCACTGAGGTCCTCGCGGAGCTTTATGATGGCCGTCCTGCTTT
CGAGCAACGCTGGGCCGACTTTAGATTTTGCAAGTGGCCGGAGGAGGTAG
TGGAAAGGAAAGAGGGAGGGAGGCAGGAGTGGGGGAGTATTACGACGAAG
GACAAGGGAATAGCGGAATGGTTTGCCGAGCAGAATGAAGGATTTTTAAA
GGATACCCGGGTACGCCTGGAAACGAGGGAAGGGGGGAATGAGGGCAGGG
CAAAGAAGAAAGTGGTGGTGATTTCTTTCTCTCATTTCCTTCCGCGGGAG
GAACTGTGTCCGGAGAAACGGTTTTTGATCGAGCCGTTGCTGCCCAAAGT
GATTGGAAGCCAGCCATTGAGAGAGCAAGTGGAGCGGTTGAAGCCTGACT
TGCATTTGTTCGGCCATACGCATATTCCCGTCGACATGGAGGTGGGAGGA
ATACGGTATCTGCAATGGCCCCTTGGGTCGGTGGGGGAGCAGGGACGTCA
AACGGGCGAGATGAGCGTTAAGGGTCCCGTGGTCGTGTTTGATTCCAAAG
GCGGTGGAGGGGTGCAGGGAGAGGTGCCGACGAGGTGGGGGGCGCACTAT
AAAGAGGAGGGGAGGGATGTGCTAAACACGGAGCTCGCACCGTGGGTGAA
AATGTATTGGAGTCAACGCTGA

Coding sequence (CDS) from alignment at scaffold_15:302743..304214+

>mRNA_6307 ID=mRNA_6307|Name=jgi.p|Nanoce1779_2|530318|organism=Nannochloropsis oceanica|type=CDS|length=3492bp|location=Sequence derived from alignment at scaffold_15:302743..304214+ (Nannochloropsis oceanica)
ATGTCTACCATCTCCCCTGCACCCGCCCCACCGCCACCGTCCCTGACGTT
CAACCCGCACACCCTCACCGAGCTCGTGGTACCCTCCAAGGATTTTGATA
GCGTCCGTGTCCACGCCATCTCGGACATCCATGTGGACTACAGAAAAAAT
TTGGAACTGTTTAAGCGTTGGTGCAGTAGCAGCAGCAGTGGCAGTTGTAT
TAGTGGTGATATCGCATCCAGCCCCTCTAACGTCCGCGCTGCTCTTGCAG
CGGCCCGTCGCCGTTTCCATGCCACATTCATTGTTGCAGGCAACCATGAC
TTGTGGGTTAGCAGCGCTTTGGCGGAAGAGGGGGTGGTGGATTCTATAGA
TAAACTAACGCGTGGTAAAATCTACACCGGTCCTGTCCTTCTCCAACTTC
CCCGCTCCTCCCCCGATCCCTCCCTCCCTCTCTCGTTTCTCCTGCTTGTG
CCGTTACTCTCGTGGTATCACCCGTCATGGGACACAGAGCCTGACTTACC
CACTGAGGTCCTCGCGGAGCTTTATGATGGCCGTCCTGCTTTCGAGCAAC
GCTGGGCCGACTTTAGATTTTGCAAGTGGCCGGAGGAGGTAGTGGAAAGG
AAAGAGGGAGGGAGGCAGGAGTGGGGGAGTATTACGACGAAGGACAAGGG
AATAGCGGAATGGTTTGCCGAGCAGAATGAAGGATTTTTAAAGGATACCC
GGGTACGCCTGGAAACGAGGGAAGGGGGGAATGAGGGCAGGGCAAAGAAG
AAAGTGGTGGTGATTTCTTTCTCTCATTTCCTTCCGCGGGAGGAACTGTG
TCCGGAGAAACGGTTTTTGATCGAGCCGTTGCTGCCCAAAGTGATTGGAA
GCCAGCCATTGAGAGAGCAAGTGGAGCGGTTGAAGCCTGACTTGCATTTG
TTCGGCCATACGCATATTCCCGTCGACATGGAGGTGGGAGGAATACGGTA
TCTGCAATGGCCCCTTGGGTCGGTGGGGGAGCAGGGACGTCAAACGGGCG
AGATGAGCGTTAAGGGTCCCGTGGTCGTGTTTGATTCCAAAGGCGGTGGA
GGGGTGCAGGGAGAGGTGCCGACGAGGTGGGGGGCGCACTATAAAGAGGA
GGGGAGGGATGTGCTAAACACGGAGCTCGCACCGTGGGTGAAAATGTATT
GGAGTCAACGCTGAATGTCTACCATCTCCCCTGCACCCGCCCCACCGCCA
CCGTCCCTGACGTTCAACCCGCACACCCTCACCGAGCTCGTGGTACCCTC
CAAGGATTTTGATAGCGTCCGTGTCCACGCCATCTCGGACATCCATGTGG
ACTACAGAAAAAATTTGGAACTGTTTAAGCGTTGGTGCAGTAGCAGCAGC
AGTGGCAGTTGTATTAGTGGTGATATCGCATCCAGCCCCTCTAACGTCCG
CGCTGCTCTTGCAGCGGCCCGTCGCCGTTTCCATGCCACATTCATTGTTG
CAGGCAACCATGACTTGTGGGTTAGCAGCGCTTTGGCGGAAGAGGGGGTG
GTGGATTCTATAGATAAACTAACGCGTGGTAAAATCTACACCGGTCCTGT
CCTTCTCCAACTTCCCCGCTCCTCCCCCGATCCCTCCCTCCCTCTCTCGT
TTCTCCTGCTTGTGCCGTTACTCTCGTGGTATCACCCGTCATGGGACACA
GAGCCTGACTTACCCACTGAGGTCCTCGCGGAGCTTTATGATGGCCGTCC
TGCTTTCGAGCAACGCTGGGCCGACTTTAGATTTTGCAAGTGGCCGGAGG
AGGTAGTGGAAAGGAAAGAGGGAGGGAGGCAGGAGTGGGGGAGTATTACG
ACGAAGGACAAGGGAATAGCGGAATGGTTTGCCGAGCAGAATGAAGGATT
TTTAAAGGATACCCGGGTACGCCTGGAAACGAGGGAAGGGGGGAATGAGG
GCAGGGCAAAGAAGAAAGTGGTGGTGATTTCTTTCTCTCATTTCCTTCCG
CGGGAGGAACTGTGTCCGGAGAAACGGTTTTTGATCGAGCCGTTGCTGCC
CAAAGTGATTGGAAGCCAGCCATTGAGAGAGCAAGTGGAGCGGTTGAAGC
CTGACTTGCATTTGTTCGGCCATACGCATATTCCCGTCGACATGGAGGTG
GGAGGAATACGGTATCTGCAATGGCCCCTTGGGTCGGTGGGGGAGCAGGG
ACGTCAAACGGGCGAGATGAGCGTTAAGGGTCCCGTGGTCGTGTTTGATT
CCAAAGGCGGTGGAGGGGTGCAGGGAGAGGTGCCGACGAGGTGGGGGGCG
CACTATAAAGAGGAGGGGAGGGATGTGCTAAACACGGAGCTCGCACCGTG
GGTGAAAATGTATTGGAGTCAACGCTGAATGTCTACCATCTCCCCTGCAC
CCGCCCCACCGCCACCGTCCCTGACGTTCAACCCGCACACCCTCACCGAG
CTCGTGGTACCCTCCAAGGATTTTGATAGCGTCCGTGTCCACGCCATCTC
GGACATCCATGTGGACTACAGAAAAAATTTGGAACTGTTTAAGCGTTGGT
GCAGTAGCAGCAGCAGTGGCAGTTGTATTAGTGGTGATATCGCATCCAGC
CCCTCTAACGTCCGCGCTGCTCTTGCAGCGGCCCGTCGCCGTTTCCATGC
CACATTCATTGTTGCAGGCAACCATGACTTGTGGGTTAGCAGCGCTTTGG
CGGAAGAGGGGGTGGTGGATTCTATAGATAAACTAACGCGTGGTAAAATC
TACACCGGTCCTGTCCTTCTCCAACTTCCCCGCTCCTCCCCCGATCCCTC
CCTCCCTCTCTCGTTTCTCCTGCTTGTGCCGTTACTCTCGTGGTATCACC
CGTCATGGGACACAGAGCCTGACTTACCCACTGAGGTCCTCGCGGAGCTT
TATGATGGCCGTCCTGCTTTCGAGCAACGCTGGGCCGACTTTAGATTTTG
CAAGTGGCCGGAGGAGGTAGTGGAAAGGAAAGAGGGAGGGAGGCAGGAGT
GGGGGAGTATTACGACGAAGGACAAGGGAATAGCGGAATGGTTTGCCGAG
CAGAATGAAGGATTTTTAAAGGATACCCGGGTACGCCTGGAAACGAGGGA
AGGGGGGAATGAGGGCAGGGCAAAGAAGAAAGTGGTGGTGATTTCTTTCT
CTCATTTCCTTCCGCGGGAGGAACTGTGTCCGGAGAAACGGTTTTTGATC
GAGCCGTTGCTGCCCAAAGTGATTGGAAGCCAGCCATTGAGAGAGCAAGT
GGAGCGGTTGAAGCCTGACTTGCATTTGTTCGGCCATACGCATATTCCCG
TCGACATGGAGGTGGGAGGAATACGGTATCTGCAATGGCCCCTTGGGTCG
GTGGGGGAGCAGGGACGTCAAACGGGCGAGATGAGCGTTAAGGGTCCCGT
GGTCGTGTTTGATTCCAAAGGCGGTGGAGGGGTGCAGGGAGAGGTGCCGA
CGAGGTGGGGGGCGCACTATAAAGAGGAGGGGAGGGATGTGCTAAACACG
GAGCTCGCACCGTGGGTGAAAATGTATTGGAGTCAACGCTGA

Synonyms

Publications