jgi.p|Nanoce1779_2|671902, mRNA_6306 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|671902
Unique Name	mRNA_6306
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1242
Alignment location	scaffold_15:300244..302002 -

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Properties


Property Name	Value
TranscriptId	671988
Track	FilteredModels2
ProteinId	671902

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:300244..302002 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|671902	gene_6306	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|671902	mRNA_6306-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6306	CDS_6306	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:300244..302002-
coding sequence from alignment at scaffold_15:300244..302002-

mRNA sequence

>mRNA_6306 ID=mRNA_6306|Name=jgi.p|Nanoce1779_2|671902|organism=Nannochloropsis oceanica|type=mRNA|length=1242bp
ACAGCCACCATGAAAGGCTTTGAAGACATCGATTGGGGAATATTTGACAA
TTCACCACCCAATCTTACACTTTCCTCTGCTGCTGATGTTGCTGCACCAT
TGCCCTTTCCCTCCCACCCTTCCTCTTCGTCCTTCTCCTCCTCCCCAGCC
AAGGGCAGCCTGGCGCTCTCGCGCTCGCCGCCTCATCACCACCTGCGGTT
GACGCACAGGCAGCTTTCGAGCTCTCCTGCTCCTCCTTGTTTCAAAACTG
TTCTTGGTGTCAAGGAAAGGCTTCATTCTACTTTTCTTATCGCCACCACA
ACTGCTGCTACCGCGGAGATGGCGGCAGCACCCACTTCTTGGGAGAAGGC
GAAGACGAAAGACAAGAATAAGGAAAATGACGACGAAAGGGAGGAGGAGG
AGGAGGAGGAGAAAGAGCAGAAGCGGCAAAAAGATGGCTTGGGTTTACTC
GTGAGCATGAGTGACAAGGCGTTTGAATGTGAGGGTGATACAGGAGCACT
GGGTCGATGCACTCTCATCCAGAGGGGGAGGGAGGGAGGACAGTGGAAAG
GGAGGGAGGGAGGGCAGCAGCACTTAGAGACGCTTTTACTGCTTGATCTT
AAGGGTGTAGAGTATGTGGGAAGAGTGGGAAGGCTCGGAGGGACGGCCTG
GTTGGTCGATGTTGCTTCAAAAGCGAGAGCAAAGAAGGGAGGGGGGGGAA
TGAGGGAGGGAAGGGGGGAGGGAGGGACCGGGGAGGCGAGGGTGGAGAGT
GTGTACGAGAATATCGTGAACTTGCTTTCGATAAATAGCTCCTTGGACAA
GATAGGTGGGGCTATGAGGAGAGAGACGACGAGTGGCATCGGGAGCAGCA
ACAGCAGCAGCAGTAGCAGTGGGCAGAAAAGGGTGAAAACCGTAAGCTTG
CGGGGTTTGCAGGCGCTGGAGGAGGGAAGGGAAGACTGGGATCAGATGAA
GGAGGAGGAGGAAGAGGAGAAGATAGGGATGGGGGAGGAGGAGGAGGAGG
CCGAGGAGGAGAAGGAGGCCGAGGAGGAGACTGAGGAAGATGATAGCGAT
GAAAGTGACTGCTGAGGGAGAAGGGGGGCGCGGAAGGGGTGTGTGTGGAT
TGCACATGGATGAATGACGAGTCGGCAACGGGCAGCGAAGAGGAAGGAAA
GGAGTGTTTTGGTTTTGTGTCAAGTCGTAGATTGAGATCGAGCAAGGCAT
GGACAAGAAACGGAAAGAGAGAGAAAGAAAAACAGGAGACGG

protein sequence of jgi.p|Nanoce1779_2|671902

>mRNA_6306-protein ID=mRNA_6306-protein|Name=jgi.p|Nanoce1779_2|671902|organism=Nannochloropsis oceanica|type=polypeptide|length=352bp
MKGFEDIDWGIFDNSPPNLTLSSAADVAAPLPFPSHPSSSSFSSSPAKGS
LALSRSPPHHHLRLTHRQLSSSPAPPCFKTVLGVKERLHSTFLIATTTAA
TAEMAAAPTSWEKAKTKDKNKENDDEREEEEEEEKEQKRQKDGLGLLVSM
SDKAFECEGDTGALGRCTLIQRGREGGQWKGREGGQQHLETLLLLDLKGV
EYVGRVGRLGGTAWLVDVASKARAKKGGGGMREGRGEGGTGEARVESVYE
NIVNLLSINSSLDKIGGAMRRETTSGIGSSNSSSSSSGQKRVKTVSLRGL
QALEEGREDWDQMKEEEEEEKIGMGEEEEEAEEEKEAEEETEEDDSDESD
C*

mRNA from alignment at scaffold_15:300244..302002-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6306 ID=mRNA_6306|Name=jgi.p|Nanoce1779_2|671902|organism=Nannochloropsis oceanica|type=mRNA|length=1759bp|location=Sequence derived from alignment at scaffold_15:300244..302002- (Nannochloropsis oceanica)
ACAGCCACCATGAAAGGCTTTGAAGACATCGATTGGGGAATATTTGACAA
TTCACCACCCAATCTTACACTTTCCTCTGCTGCTGATGTTGCTGCACCAT
TGCCCTTTCCCTCCCACCCTTCCTCTTCGTCCTTCTCCTCCTCCCCAGCC
AAGGGCAGCCTGGCGCTCTCGCGCTCGCCGCCTCATCACCACCTGCGGTT
GACGCACAGGCAGCTTTCGAGCTCTCCTGCTCCTCCTTGTTTCAAAACTG
TTCTTGGTGTCAAGGAAAGGCTTCATTCTACTTTTCTTATCGCCACCACA
ACTGCTGCTACCGCGGAGATGGCGGCAGCACCCACTTCTTGGGAGAAGGC
GAAGACGAAAGACAAGAATAAGGAAAATGACGACGAAAGGGAGGAGGAGG
AGGAGGAGGAGAAAGAGCAGAAGGTAGAGAAGGAGGTAGCAGAGGAGATT
AAAGAGGAAAAAATATGCCAAGGCAAGCAAGCAGCTACTACTTCTACCAG
TTACCTTCCTCCAACCCCCACTACCGCCACCCGTCCCAGGAAGGGAAATG
GCACAGGCCCAATCATTCAGACAAGCATGCCGCTCCTCTTTCCTTCCGCG
GTGCAGCGGCAAAAAGATGGCTTGGGTTTACTCGTGAGCATGAGTGACAA
GGCGTTTGAATGTGAGGGTGATACAGGAGCACTGGGTCGATGCACTCTCA
TCCAGAGGGGGAGGGAGGGAGGACAGTGGAAAGGGAGGGAGGGAGGGCAG
CAGCACTTAGAGACGCTTTTACTGCTTGATCTTAAGGGTGTAGAGTATGT
GGGAAGAGTGGGAAGGCTCGGAGGGACGGCCTGGTTGGTCGATGTTGCTT
CAAAAGCGAGAGCAAAGAAGGGAGGGGGGGGAATGAGGGAGGGAAGGGGG
GAGGGAGGGACCGGGGAGGCGAGGGTGGAGAGTGTGTACGAGAATATCGT
GAACTTGCTTTCGATAAATAGCTCCTTGGACAAGATAGGTGGGGTGAGAT
TGAGGAGGAGGGAGGACGAGGACGGGGAGGAATGGAATGTGTCGTCGGAA
GGGTCCGACAGTGACTTGAAGGAGAAGGGAGAAAAAGGAAATAAGATGAG
TGGAAGGAATGGATGGAAGACGACAACTATGGCAGCTTCAGGGAGTAGAA
GGAAGAGAAAGGGAAATGTGGTGGCGTGGAAGAGGAAGGGTGGTGGCTTT
GGCGGTGGGAGAGGACGGGAGGGAGGAAGGAAGAGAATGAAGACGACAGC
GACAGTCACAAGGAAGAAGAAGAGGGTCAGTGCGAAAAGAAAAAAGGCCG
ATGGCTGACAACACGTCGGTGGGCAAGGCTATGAGGAGAGAGACGACGAG
TGGCATCGGGAGCAGCAACAGCAGCAGCAGTAGCAGTGGGCAGAAAAGGG
TGAAAACCGTAAGCTTGCGGGGTTTGCAGGCGCTGGAGGAGGGAAGGGAA
GACTGGGATCAGATGAAGGAGGAGGAGGAAGAGGAGAAGATAGGGATGGG
GGAGGAGGAGGAGGAGGCCGAGGAGGAGAAGGAGGCCGAGGAGGAGACTG
AGGAAGATGATAGCGATGAAAGTGACTGCTGAGGGAGAAGGGGGGCGCGG
AAGGGGTGTGTGTGGATTGCACATGGATGAATGACGAGTCGGCAACGGGC
AGCGAAGAGGAAGGAAAGGAGTGTTTTGGTTTTGTGTCAAGTCGTAGATT
GAGATCGAGCAAGGCATGGACAAGAAACGGAAAGAGAGAGAAAGAAAAAC
AGGAGACGG

Coding sequence (CDS) from alignment at scaffold_15:300244..302002-

>mRNA_6306 ID=mRNA_6306|Name=jgi.p|Nanoce1779_2|671902|organism=Nannochloropsis oceanica|type=CDS|length=3168bp|location=Sequence derived from alignment at scaffold_15:300244..302002- (Nannochloropsis oceanica)
GCTATGAGGAGAGAGACGACGAGTGGCATCGGGAGCAGCAACAGCAGCAG
CAGTAGCAGTGGGCAGAAAAGGGTGAAAACCGTAAGCTTGCGGGGTTTGC
AGGCGCTGGAGGAGGGAAGGGAAGACTGGGATCAGATGAAGGAGGAGGAG
GAAGAGGAGAAGATAGGGATGGGGGAGGAGGAGGAGGAGGCCGAGGAGGA
GAAGGAGGCCGAGGAGGAGACTGAGGAAGATGATAGCGATGAAAGTGACT
GCTGACGGCAAAAAGATGGCTTGGGTTTACTCGTGAGCATGAGTGACAAG
GCGTTTGAATGTGAGGGTGATACAGGAGCACTGGGTCGATGCACTCTCAT
CCAGAGGGGGAGGGAGGGAGGACAGTGGAAAGGGAGGGAGGGAGGGCAGC
AGCACTTAGAGACGCTTTTACTGCTTGATCTTAAGGGTGTAGAGTATGTG
GGAAGAGTGGGAAGGCTCGGAGGGACGGCCTGGTTGGTCGATGTTGCTTC
AAAAGCGAGAGCAAAGAAGGGAGGGGGGGGAATGAGGGAGGGAAGGGGGG
AGGGAGGGACCGGGGAGGCGAGGGTGGAGAGTGTGTACGAGAATATCGTG
AACTTGCTTTCGATAAATAGCTCCTTGGACAAGATAGGTGGGATGAAAGG
CTTTGAAGACATCGATTGGGGAATATTTGACAATTCACCACCCAATCTTA
CACTTTCCTCTGCTGCTGATGTTGCTGCACCATTGCCCTTTCCCTCCCAC
CCTTCCTCTTCGTCCTTCTCCTCCTCCCCAGCCAAGGGCAGCCTGGCGCT
CTCGCGCTCGCCGCCTCATCACCACCTGCGGTTGACGCACAGGCAGCTTT
CGAGCTCTCCTGCTCCTCCTTGTTTCAAAACTGTTCTTGGTGTCAAGGAA
AGGCTTCATTCTACTTTTCTTATCGCCACCACAACTGCTGCTACCGCGGA
GATGGCGGCAGCACCCACTTCTTGGGAGAAGGCGAAGACGAAAGACAAGA
ATAAGGAAAATGACGACGAAAGGGAGGAGGAGGAGGAGGAGGAGAAAGAG
CAGAAGGCTATGAGGAGAGAGACGACGAGTGGCATCGGGAGCAGCAACAG
CAGCAGCAGTAGCAGTGGGCAGAAAAGGGTGAAAACCGTAAGCTTGCGGG
GTTTGCAGGCGCTGGAGGAGGGAAGGGAAGACTGGGATCAGATGAAGGAG
GAGGAGGAAGAGGAGAAGATAGGGATGGGGGAGGAGGAGGAGGAGGCCGA
GGAGGAGAAGGAGGCCGAGGAGGAGACTGAGGAAGATGATAGCGATGAAA
GTGACTGCTGACGGCAAAAAGATGGCTTGGGTTTACTCGTGAGCATGAGT
GACAAGGCGTTTGAATGTGAGGGTGATACAGGAGCACTGGGTCGATGCAC
TCTCATCCAGAGGGGGAGGGAGGGAGGACAGTGGAAAGGGAGGGAGGGAG
GGCAGCAGCACTTAGAGACGCTTTTACTGCTTGATCTTAAGGGTGTAGAG
TATGTGGGAAGAGTGGGAAGGCTCGGAGGGACGGCCTGGTTGGTCGATGT
TGCTTCAAAAGCGAGAGCAAAGAAGGGAGGGGGGGGAATGAGGGAGGGAA
GGGGGGAGGGAGGGACCGGGGAGGCGAGGGTGGAGAGTGTGTACGAGAAT
ATCGTGAACTTGCTTTCGATAAATAGCTCCTTGGACAAGATAGGTGGGAT
GAAAGGCTTTGAAGACATCGATTGGGGAATATTTGACAATTCACCACCCA
ATCTTACACTTTCCTCTGCTGCTGATGTTGCTGCACCATTGCCCTTTCCC
TCCCACCCTTCCTCTTCGTCCTTCTCCTCCTCCCCAGCCAAGGGCAGCCT
GGCGCTCTCGCGCTCGCCGCCTCATCACCACCTGCGGTTGACGCACAGGC
AGCTTTCGAGCTCTCCTGCTCCTCCTTGTTTCAAAACTGTTCTTGGTGTC
AAGGAAAGGCTTCATTCTACTTTTCTTATCGCCACCACAACTGCTGCTAC
CGCGGAGATGGCGGCAGCACCCACTTCTTGGGAGAAGGCGAAGACGAAAG
ACAAGAATAAGGAAAATGACGACGAAAGGGAGGAGGAGGAGGAGGAGGAG
AAAGAGCAGAAGGCTATGAGGAGAGAGACGACGAGTGGCATCGGGAGCAG
CAACAGCAGCAGCAGTAGCAGTGGGCAGAAAAGGGTGAAAACCGTAAGCT
TGCGGGGTTTGCAGGCGCTGGAGGAGGGAAGGGAAGACTGGGATCAGATG
AAGGAGGAGGAGGAAGAGGAGAAGATAGGGATGGGGGAGGAGGAGGAGGA
GGCCGAGGAGGAGAAGGAGGCCGAGGAGGAGACTGAGGAAGATGATAGCG
ATGAAAGTGACTGCTGACGGCAAAAAGATGGCTTGGGTTTACTCGTGAGC
ATGAGTGACAAGGCGTTTGAATGTGAGGGTGATACAGGAGCACTGGGTCG
ATGCACTCTCATCCAGAGGGGGAGGGAGGGAGGACAGTGGAAAGGGAGGG
AGGGAGGGCAGCAGCACTTAGAGACGCTTTTACTGCTTGATCTTAAGGGT
GTAGAGTATGTGGGAAGAGTGGGAAGGCTCGGAGGGACGGCCTGGTTGGT
CGATGTTGCTTCAAAAGCGAGAGCAAAGAAGGGAGGGGGGGGAATGAGGG
AGGGAAGGGGGGAGGGAGGGACCGGGGAGGCGAGGGTGGAGAGTGTGTAC
GAGAATATCGTGAACTTGCTTTCGATAAATAGCTCCTTGGACAAGATAGG
TGGGATGAAAGGCTTTGAAGACATCGATTGGGGAATATTTGACAATTCAC
CACCCAATCTTACACTTTCCTCTGCTGCTGATGTTGCTGCACCATTGCCC
TTTCCCTCCCACCCTTCCTCTTCGTCCTTCTCCTCCTCCCCAGCCAAGGG
CAGCCTGGCGCTCTCGCGCTCGCCGCCTCATCACCACCTGCGGTTGACGC
ACAGGCAGCTTTCGAGCTCTCCTGCTCCTCCTTGTTTCAAAACTGTTCTT
GGTGTCAAGGAAAGGCTTCATTCTACTTTTCTTATCGCCACCACAACTGC
TGCTACCGCGGAGATGGCGGCAGCACCCACTTCTTGGGAGAAGGCGAAGA
CGAAAGACAAGAATAAGGAAAATGACGACGAAAGGGAGGAGGAGGAGGAG
GAGGAGAAAGAGCAGAAG

Synonyms

Publications