jgi.p|Nanoce1779_2|594512, mRNA_6302 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594512
Unique NamemRNA_6302
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1259
Alignment locationscaffold_15:287271..288888 +

Link to JBrowse

Properties
Property NameValue
TranscriptId594598
TrackFilteredModels2
ProteinId594512
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:287271..288888 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594512gene_6302Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594512mRNA_6302-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6302CDS_6302Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6302 ID=mRNA_6302|Name=jgi.p|Nanoce1779_2|594512|organism=Nannochloropsis oceanica|type=mRNA|length=1259bp
AGGTCACGCGTCATCGCGTCGTCGTCCTCCCACCTTCCAGCGGCTGGCCT
CTTTTCCTCTCCTCTTCTATCTGCTCCATTACTACCCCCCTCCCATCCGT
CCACGACACAAGAAAGAACCACTCGTAGCAAGGCCTCGCCTTCTCACCAC
ATCACTACTATGTCGATGAACATTTTCCGCTTGGCGGGAGATATGTCGCA
CGTATTCTCCATCATCATCCTTTTGCTTCGGTTGCAAGTTGCAAAGAACG
CCAATGGCGTCTCTCTCAAGACGCAAGAATTGTTCTTGATCGTATTTTGT
ACTCGGTACCTAGACCTGTTTATACGCTACATTTCTCTCTATAACTCCGT
GATGAAGATTTTGTACATCGGCTCCACGGCGGGTAAGTCGTTGAGGGGGG
TGGGAGGAAGCGAGGGAGAGAGAGGAAAGGGGAGGGAGGGAGAATGGACA
GGAGGAAACATGTGAAGCATGTACACAGAGCGTTTCCCACCTGCTCGTCC
GCTTCTTGTAATACACGAAACTCAAGATTGAGATGCATGCATGACAGCCG
AAGGAAAAGGAAGAGACGCTAATTTCTTCTCAGTGCGTTTATGCTCTTCT
CAACTCCCTCCACCCGTCCCTCTGTTTTTCTCTGTCCCCCTCCCTCCATT
TCTCTCTCCCCCCCTCCCTCCTTTCCTCTTTCGCAGCGATCGTTCACATG
ATCAGATACCGGGAGCCATACCGCAGCACGTACGACAAGAACCAAGACTC
TTTCCGACTGGAGTTCGCCTTGGCGCCCTGCTTTGTCCTGGCGTTGATCA
CAAACTTAATAAGGGGCTTCGGCATCGTTGAGCTGCTGTGGACCTTTTCC
ATCTACCTGGAGGCAGTGGCCATCCTCCCTCAATTGATCGTGCTGCAGCG
ATACAGCGTGGTGGAGAATTTGACAGGACATTACATTTTCTTCCTTGGGG
CGTACCGAGGCCTTTACATCCTGAACTGGATCTATCGGGCCTACACGGAG
AAGCACTACCACCACGATTTGGTCGTGTACGCCTGTGGCTTTGTCCAAAC
CGCCCTCTATGCCGACTTCTTCTATTACTACATGCAGAGCAAATACCACG
GCGGCACTTTCTCCTTACCCACATCTGCGGGCGGGTTCAAGTAAATCGGA
TTGTGGGAGGAAATGAAAGGTGGAAGCATGGAGGGAGGAGGGAAGGAGGG
AAGGAGGGAATGAAGGGAGCATTTTGTGTAGTACGACTACAAGGAGAAGG
AGAGCCACG
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protein sequence of jgi.p|Nanoce1779_2|594512

>mRNA_6302-protein ID=mRNA_6302-protein|Name=jgi.p|Nanoce1779_2|594512|organism=Nannochloropsis oceanica|type=polypeptide|length=149bp
MIRYREPYRSTYDKNQDSFRLEFALAPCFVLALITNLIRGFGIVELLWTF
SIYLEAVAILPQLIVLQRYSVVENLTGHYIFFLGAYRGLYILNWIYRAYT
EKHYHHDLVVYACGFVQTALYADFFYYYMQSKYHGGTFSLPTSAGGFK*
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mRNA from alignment at scaffold_15:287271..288888+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6302 ID=mRNA_6302|Name=jgi.p|Nanoce1779_2|594512|organism=Nannochloropsis oceanica|type=mRNA|length=1618bp|location=Sequence derived from alignment at scaffold_15:287271..288888+ (Nannochloropsis oceanica)
AGGTCACGCGTCATCGCGTCGTCGTCCTCCCACCTTCCAGCGGCTGGCCT
CTTTTCCTCTCCTCTTCTATCTGCTCCATTACTACCCCCCTCCCATCCGT
CCACGACACAAGAAAGAACCACTCGTAGCAAGGCCTCGCCTTCTCACCAC
ATCACTACTATGTCGATGAACATTTTCCGCTTGGCGGGAGATATGTCGCA
CGTATTCTCCATCATCATCCTTTTGCTTCGGTTGCAAGTTGCAAAGAACG
CCAATGGCGTCTCTCTCAAGACGCAAGAATTGTTCTTGATCGTATTTTGT
ACTCGGTACCTAGACCTGTTTATACGCTACATTTCTCTCTATAACTCCGT
GATGAAGATTTTGTACATCGGCTCCACGGCGGGTAAGTCGTTGAGGGGGG
TGGGAGGAAGCGAGGGAGAGAGAGGAAAGGGGAGGGAGGGAGAATGGACA
GGAGGAAACATGTGAAGCATGTACACAGAGCGTTTCCCACCTGCTCGTCC
GCTTCTTGTAATACACGAAACTCAAGATTGAGATGCATGCATGACAGCCG
AAGGAAAAGGAAGAGACGCTAATTTCTTCTCAGTGCGTTTATGCTCTTCT
CAACTCCCTCCACCCGTCCCTCTGTTTTTCTCTGTCCCCCTCCCTCCATT
TCTCTCTCCCCCCCTCCCTCCTTTCCTCTTTCGCAGCGATCGTTCACATG
ATCAGATACCGGGAGCCATACCGCAGCACGTACGACAAGAACCAAGACTC
TTTCCGACTGGAGTTCGCCTTGGCGCCCTGCTTTGTCCTGGCGTTGATCA
CAAACTTAATAAGGGGCTTCGGCATCGTTGAGGTAGGGAGGAAGGGAGGT
CGGGGGGGAGGGAAGGAACCTGTACGGTTTCCTGATACGTGTCTTATCTA
GCACCCTGTCCTCCCCTCCATCCCTCCTCCTTCGACCCCTTAGCTGCTGT
GGACCTTTTCCATCTACCTGGAGGCAGTGGCCATCCTCCCTCAATTGATC
GTGCTGCAGCGATACAGCGTGGTGGAGAATTTGACAGGACATTACATTTT
CTTCCTTGGGGCGTACCGAGGCCTTTACATCCTGAACTGGGTAGGGAGGG
AGGAAGGGGGGGAGGAAGGGGGGGAGGGAAGGGGGGGTGGGAAGGGGGGG
AGGGAGGGTGGGGGGCGCAGAGGTATGTGGTTGAGGGCTTTCCGTGAACA
CAGCATCTCCTTCCTCCTTGGGGCGAACGTACTGTTACCTAGTTCAATGT
TTTTATTTATCTCAGACATGAGATATTGACATTTTCAAATTACTTATTTG
TTATTCATCTATTTCCGTCATTTAACTATTGATTACAGATCTATCGGGCC
TACACGGAGAAGCACTACCACCACGATTTGGTCGTGTACGCCTGTGGCTT
TGTCCAAACCGCCCTCTATGCCGACTTCTTCTATTACTACATGCAGAGCA
AATACCACGGCGGCACTTTCTCCTTACCCACATCTGCGGGCGGGTTCAAG
TAAATCGGATTGTGGGAGGAAATGAAAGGTGGAAGCATGGAGGGAGGAGG
GAAGGAGGGAAGGAGGGAATGAAGGGAGCATTTTGTGTAGTACGACTACA
AGGAGAAGGAGAGCCACG
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Coding sequence (CDS) from alignment at scaffold_15:287271..288888+

>mRNA_6302 ID=mRNA_6302|Name=jgi.p|Nanoce1779_2|594512|organism=Nannochloropsis oceanica|type=CDS|length=1341bp|location=Sequence derived from alignment at scaffold_15:287271..288888+ (Nannochloropsis oceanica)
ATGATCAGATACCGGGAGCCATACCGCAGCACGTACGACAAGAACCAAGA
CTCTTTCCGACTGGAGTTCGCCTTGGCGCCCTGCTTTGTCCTGGCGTTGA
TCACAAACTTAATAAGGGGCTTCGGCATCGTTGAGCTGCTGTGGACCTTT
TCCATCTACCTGGAGGCAGTGGCCATCCTCCCTCAATTGATCGTGCTGCA
GCGATACAGCGTGGTGGAGAATTTGACAGGACATTACATTTTCTTCCTTG
GGGCGTACCGAGGCCTTTACATCCTGAACTGGATCTATCGGGCCTACACG
GAGAAGCACTACCACCACGATTTGGTCGTGTACGCCTGTGGCTTTGTCCA
AACCGCCCTCTATGCCGACTTCTTCTATTACTACATGCAGAGCAAATACC
ACGGCGGCACTTTCTCCTTACCCACATCTGCGGGCGGGTTCAAGTAAATG
ATCAGATACCGGGAGCCATACCGCAGCACGTACGACAAGAACCAAGACTC
TTTCCGACTGGAGTTCGCCTTGGCGCCCTGCTTTGTCCTGGCGTTGATCA
CAAACTTAATAAGGGGCTTCGGCATCGTTGAGCTGCTGTGGACCTTTTCC
ATCTACCTGGAGGCAGTGGCCATCCTCCCTCAATTGATCGTGCTGCAGCG
ATACAGCGTGGTGGAGAATTTGACAGGACATTACATTTTCTTCCTTGGGG
CGTACCGAGGCCTTTACATCCTGAACTGGATCTATCGGGCCTACACGGAG
AAGCACTACCACCACGATTTGGTCGTGTACGCCTGTGGCTTTGTCCAAAC
CGCCCTCTATGCCGACTTCTTCTATTACTACATGCAGAGCAAATACCACG
GCGGCACTTTCTCCTTACCCACATCTGCGGGCGGGTTCAAGTAAATGATC
AGATACCGGGAGCCATACCGCAGCACGTACGACAAGAACCAAGACTCTTT
CCGACTGGAGTTCGCCTTGGCGCCCTGCTTTGTCCTGGCGTTGATCACAA
ACTTAATAAGGGGCTTCGGCATCGTTGAGCTGCTGTGGACCTTTTCCATC
TACCTGGAGGCAGTGGCCATCCTCCCTCAATTGATCGTGCTGCAGCGATA
CAGCGTGGTGGAGAATTTGACAGGACATTACATTTTCTTCCTTGGGGCGT
ACCGAGGCCTTTACATCCTGAACTGGATCTATCGGGCCTACACGGAGAAG
CACTACCACCACGATTTGGTCGTGTACGCCTGTGGCTTTGTCCAAACCGC
CCTCTATGCCGACTTCTTCTATTACTACATGCAGAGCAAATACCACGGCG
GCACTTTCTCCTTACCCACATCTGCGGGCGGGTTCAAGTAA
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Synonyms
Publications