jgi.p|Nanoce1779_2|594509, mRNA_6300 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594509
Unique NamemRNA_6300
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1106
Alignment locationscaffold_15:285753..286892 -

Link to JBrowse

Properties
Property NameValue
TranscriptId594595
TrackFilteredModels2
ProteinId594509
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:285753..286892 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594509gene_6300Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594509mRNA_6300-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6300CDS_6300Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6300 ID=mRNA_6300|Name=jgi.p|Nanoce1779_2|594509|organism=Nannochloropsis oceanica|type=mRNA|length=1106bp
ACAGCTTCCCCTATGTGGGTAGGCGGTGGCGGCGTCGAGGGCGGCGGTGA
AAATGACAAGGAGGCGTCGCAGTTGGAGGACGACGACGAGGAAGAGAGCA
TCATCATCTCCCCCCCGCCTCCAGCCTCCCCCATACAACAGCATGAGGCA
AAAGCAGTCTCTGCCAAATCAGCGGCTACTCCATCGTTTACCGCTCTTGG
AGGTCAAGATAGAACTCTGCAGCAACAAGTGCCGGTCTCCACAACGCAAG
CCTCTTCCCCCCCACCTCCCGAGAGAGACACCGACACTTCAGCACCTTCC
TCGCTTCCCTCACAATTCCCACAGTCTTTTTGCGATAATCATGACCTTCT
CCGTGCGATGCTCCTAAATTTTTATAGGGCACACAACCCCAGTAACGTAG
ATAAGATCGACGCGTTTCTTGCTCGATACCAAGGGAGAGAAGCCCAGCTC
TTGCTGGACATCCAAGGGAAATATCAAGAAAAGGGCGTACGAGTCTTGGA
CTACCTGCCACCCATCTCATCGGCAGCAGAAGGAGCAAAGGGAGATGTTA
TGAATGCAAGGATTGTGGGGGCGATGAAAACGATGACGTTTGAAGAAAAC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGTAATCCAGATGGGAA
CAAGCTCTTGCAACCCGCATCTACATCGTGCAAGACAGCAGCCGGTAACA
GTACCACCAAGAGCACCATCACCACCAGCAGCGGGGGAAGGAGTAGCAGC
AGCATCACCAGCAGCGGGGGGAGGAGCAGCAGCAGCAGTAGCAGTGTAGA
CGTATCTCAATTGCCAGCGTTGCTCCTCAGTGCGTTCACCAAGAAAGACA
CCAGTGCCAGCAGCAGCAGCAGCAGCAGCGGTGGCGGTGGCAGCAGCTCT
AGGAGCAGCAGCCGTAGGAGCGACCATGACAAAGGGCAGCGGCAGCACCA
GGAACATAGACGTCAGGGATCCTTATCCTCATCTGCGTCTCCTCCATCTG
CCAACGACAGATGCACAACTGTCTTTTCATCCACCGACTCTCCTCCTCCA
GCCGCCTGTCCATCATCACCACCCCCCTCCTCCCCGCCCTGACCGTCGAG
CGTGAC
back to top

protein sequence of jgi.p|Nanoce1779_2|594509

>mRNA_6300-protein ID=mRNA_6300-protein|Name=jgi.p|Nanoce1779_2|594509|organism=Nannochloropsis oceanica|type=polypeptide|length=360bp
MWVGGGGVEGGGENDKEASQLEDDDEEESIIISPPPPASPIQQHEAKAVS
AKSAATPSFTALGGQDRTLQQQVPVSTTQASSPPPPERDTDTSAPSSLPS
QFPQSFCDNHDLLRAMLLNFYRAHNPSNVDKIDAFLARYQGREAQLLLDI
QGKYQEKGVRVLDYLPPISSAAEGAKGDVMNARIVGAMKTMTFEENSSSS
SSSSSSSGNPDGNKLLQPASTSCKTAAGNSTTKSTITTSSGGRSSSSITS
SGGRSSSSSSSVDVSQLPALLLSAFTKKDTSASSSSSSSGGGGSSSRSSS
RRSDHDKGQRQHQEHRRQGSLSSSASPPSANDRCTTVFSSTDSPPPAACP
SSPPPSSPP*
back to top

mRNA from alignment at scaffold_15:285753..286892-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6300 ID=mRNA_6300|Name=jgi.p|Nanoce1779_2|594509|organism=Nannochloropsis oceanica|type=mRNA|length=1140bp|location=Sequence derived from alignment at scaffold_15:285753..286892- (Nannochloropsis oceanica)
ACAGCTTCCCCTATGTGGGTAGGCGGTGGCGGCGTCGAGGGCGGCGGTGA
AAATGACAAGGAGGCGTCGCAGTTGGAGGACGACGACGAGGAAGAGAGCA
TCATCATCTCCCCCCCGCCTCCAGCCTCCCCCATACAACAGCATGAGGCA
AAAGCAGTCTCTGCCAAATCAGCGGCTACTCCATCGTTTACCGCTCTTGG
AGGTCAAGATAGAACTCTGCAGCAACAAGTGCCGGTCTCCACAACGCAAG
CCTCTTCCCCCCCACCTCCCGAGAGAGACACCGACACTTCAGCACCTTCC
TCGCTTCCCTCACAATTCCCACAGTCTTTTTGCGATAATCATGACCTTCT
CCGTGCGATGCTCCTAAATTTTTATAGGGCACACAACCCCAGTAACGTAG
ATAAGATCGACGCGTTTCTTGCTCGATACCAAGGGAGAGAAGCCCAGCTC
TTGCTGGACATCCAAGGGAAATATCAAGAAAAGGGCGTACGAGTCTTGGA
CTACCTGCCACCCATCTCATCGGCAGCAGAAGGAGCAAAGGGAGATGTTA
TGAATGCAAGGATTGTGGGGGCGATGAAAACGATGACGTTTGAAGAAAAC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGTAATCCAGATGGGAA
CAAGCTCTTGCAACCCGCATCTACATCGTGCAAGACAGCAGCCGGTAACA
GTACCACCAAGAGCACCATCACCACCAGCAGCGGGGGAAGGAGTAGCAGC
AGCATCACCAGCAGCGGGGGGAGGAGCAGCAGCAGCAGTAGCAGTGTAGA
CGTATCTCAATTGCCAGCGTTGCTCCTCAGTGCGTTCACCAAGAAAGACA
CCAGTGCCAGCAGCAGCAGCAGCAGCAGCGGTGGCGGTGGCAGCAGCTCT
AGGAGCAGCAGCCGTAGGAGCGACCATGACAAAGGGCAGCGGCAGCACCA
GGAACATAGACGTCAGGGATCCTTATCCTCATCTGCGTCTCCTCCATCTG
CCAACGACAGATGCACAACTGTCTTTTCATCCACCGACTCTCCTCCTCCA
GCCGCCTGTCCATCATCACCACCCCCCTCCTCTCTTTCATCCTCCCCTCC
CCTCCCCTCCCTCCTCCCCGCCCTGACCGTCGAGCGTGAC
back to top

Coding sequence (CDS) from alignment at scaffold_15:285753..286892-

>mRNA_6300 ID=mRNA_6300|Name=jgi.p|Nanoce1779_2|594509|organism=Nannochloropsis oceanica|type=CDS|length=2160bp|location=Sequence derived from alignment at scaffold_15:285753..286892- (Nannochloropsis oceanica)
CCCTCCTCCCCGCCCTGAATGTGGGTAGGCGGTGGCGGCGTCGAGGGCGG
CGGTGAAAATGACAAGGAGGCGTCGCAGTTGGAGGACGACGACGAGGAAG
AGAGCATCATCATCTCCCCCCCGCCTCCAGCCTCCCCCATACAACAGCAT
GAGGCAAAAGCAGTCTCTGCCAAATCAGCGGCTACTCCATCGTTTACCGC
TCTTGGAGGTCAAGATAGAACTCTGCAGCAACAAGTGCCGGTCTCCACAA
CGCAAGCCTCTTCCCCCCCACCTCCCGAGAGAGACACCGACACTTCAGCA
CCTTCCTCGCTTCCCTCACAATTCCCACAGTCTTTTTGCGATAATCATGA
CCTTCTCCGTGCGATGCTCCTAAATTTTTATAGGGCACACAACCCCAGTA
ACGTAGATAAGATCGACGCGTTTCTTGCTCGATACCAAGGGAGAGAAGCC
CAGCTCTTGCTGGACATCCAAGGGAAATATCAAGAAAAGGGCGTACGAGT
CTTGGACTACCTGCCACCCATCTCATCGGCAGCAGAAGGAGCAAAGGGAG
ATGTTATGAATGCAAGGATTGTGGGGGCGATGAAAACGATGACGTTTGAA
GAAAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGTAATCCAGA
TGGGAACAAGCTCTTGCAACCCGCATCTACATCGTGCAAGACAGCAGCCG
GTAACAGTACCACCAAGAGCACCATCACCACCAGCAGCGGGGGAAGGAGT
AGCAGCAGCATCACCAGCAGCGGGGGGAGGAGCAGCAGCAGCAGTAGCAG
TGTAGACGTATCTCAATTGCCAGCGTTGCTCCTCAGTGCGTTCACCAAGA
AAGACACCAGTGCCAGCAGCAGCAGCAGCAGCAGCGGTGGCGGTGGCAGC
AGCTCTAGGAGCAGCAGCCGTAGGAGCGACCATGACAAAGGGCAGCGGCA
GCACCAGGAACATAGACGTCAGGGATCCTTATCCTCATCTGCGTCTCCTC
CATCTGCCAACGACAGATGCACAACTGTCTTTTCATCCACCGACTCTCCT
CCTCCAGCCGCCTGTCCATCATCACCACCCCCCTCCTCCCCGCCCTGAAT
GTGGGTAGGCGGTGGCGGCGTCGAGGGCGGCGGTGAAAATGACAAGGAGG
CGTCGCAGTTGGAGGACGACGACGAGGAAGAGAGCATCATCATCTCCCCC
CCGCCTCCAGCCTCCCCCATACAACAGCATGAGGCAAAAGCAGTCTCTGC
CAAATCAGCGGCTACTCCATCGTTTACCGCTCTTGGAGGTCAAGATAGAA
CTCTGCAGCAACAAGTGCCGGTCTCCACAACGCAAGCCTCTTCCCCCCCA
CCTCCCGAGAGAGACACCGACACTTCAGCACCTTCCTCGCTTCCCTCACA
ATTCCCACAGTCTTTTTGCGATAATCATGACCTTCTCCGTGCGATGCTCC
TAAATTTTTATAGGGCACACAACCCCAGTAACGTAGATAAGATCGACGCG
TTTCTTGCTCGATACCAAGGGAGAGAAGCCCAGCTCTTGCTGGACATCCA
AGGGAAATATCAAGAAAAGGGCGTACGAGTCTTGGACTACCTGCCACCCA
TCTCATCGGCAGCAGAAGGAGCAAAGGGAGATGTTATGAATGCAAGGATT
GTGGGGGCGATGAAAACGATGACGTTTGAAGAAAACAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCGGTAATCCAGATGGGAACAAGCTCTTGCAAC
CCGCATCTACATCGTGCAAGACAGCAGCCGGTAACAGTACCACCAAGAGC
ACCATCACCACCAGCAGCGGGGGAAGGAGTAGCAGCAGCATCACCAGCAG
CGGGGGGAGGAGCAGCAGCAGCAGTAGCAGTGTAGACGTATCTCAATTGC
CAGCGTTGCTCCTCAGTGCGTTCACCAAGAAAGACACCAGTGCCAGCAGC
AGCAGCAGCAGCAGCGGTGGCGGTGGCAGCAGCTCTAGGAGCAGCAGCCG
TAGGAGCGACCATGACAAAGGGCAGCGGCAGCACCAGGAACATAGACGTC
AGGGATCCTTATCCTCATCTGCGTCTCCTCCATCTGCCAACGACAGATGC
ACAACTGTCTTTTCATCCACCGACTCTCCTCCTCCAGCCGCCTGTCCATC
ATCACCACCC
back to top
Synonyms
Publications