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Properties
| Property Name | Value |
|---|
| TranscriptId | 573664 |
| Track | FilteredModels2 |
| ProteinId | 573578 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_2 | supercontig | scaffold_2:49157..52078 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_630 ID=mRNA_630|Name=jgi.p|Nanoce1779_2|573578|organism=Nannochloropsis oceanica|type=mRNA|length=2234bp
AATAACAGTAAGATCAAAAAGCTGAAGGGGGGAGCGCTCTTTATTTCGCG
GGCGCTAGCCATGCCCGGCAGCCTCCTGCCAAGACGCCCTCCCTCAACGA
TCGTCGTCCTGCTACTATTTTTAATTCTGCAAGTGATGCTTGCAGCCGCC
CGCCGTAGCTGCGCTAGCTATCGACCCGTCTCGGTCACTCTTGCATTAGT
TCCTACTTCTGGTACCACATCAGCAACGCGGACGTCTTTCGGAAGAAGCG
CTCCCGCAATGTCGACCAAGGGTGCAGCATTTAAGACTTTGGCAGCACCC
ACCGAGTACGAAGAGGTCATTAAAAAGTCTCGCTTCTTGACTCACGCCGT
CTCTGCTACGTCATTTGCCGAAGCCCAGGACTTCTTGAAGCGGGTGTCTG
ATTTGAAGGCCACGCATAATTGTTGGGGATGGCGCGGACGAGGCGAAGAG
CGTAGTTCGGACGATGGCGAGCCTGGCGGGACGGCCGGGCGGCCCATCCT
CTCTGCCATAGAAAGCGAGGAGTTGGTGGACGTGGTTGTGGTGGTGACAA
GGTATTTTGGGGGCATTAAGCTTGGCGCTGGTGGCCTGGTGCGGGCGTAT
GGCGGCGTGGCGCGAACATGTTTGAGGAACGCAGAGACAGTGACTCATAT
TCCCAAGGTTTTGGTGCGATTGATAGCACCTTTGGCCATGTCGGGGGCAG
TCTTCCAGACCATCAGTCGTGTTGAGAAGGTAGGGGAGGACTACACGGCT
GAGGAGGTGATGGTGGACGTCAAGGTGGAGGCGAGTCAAGTGGAGGGACT
GCGGCAGCAGCTGCAGGACGCCACCAAGGGGGCAGGAAGGTTGGAAGAAA
AAGCATGAAAAGAAATGAACTTAAAGAAATGGTTTACAATCACAACGAAC
AAATTGACATGCACCAAGCACGCACATTCCTTTTCCTTCTCGTCTACGAC
AGTTCCAAAAAAGGGATAACGATGAGTGCACACTCGCACTCGCAGCCACA
GCTTGGAAACACCATTGCACAGCCACTCGACCCAGCCTGCTTTTGTTTTA
AGACGAGAACATCTTGTGCACAAGGAAACAAAGATGCCCAGTCAGGGGCT
TTCTTAAATTGCTTAGAAAGGCGTCGAAACTAGAAGATCGAAAGGCGTGC
GTGCGGACGAGACAACAATGAAGTAAAAAGAGGGCGAGCCGGCACGGTCC
GTGCTTCTAATTTGCCAGATCATTCCCTCCTGCGCCCTACCAAGCGTCCC
CGACACGCCCTCCCTTCCCATTCAAACAGTGCCGTATTGTGGCAGACGGA
CGTAGGAGTGGGAAGACTCCTGTAGTCCACTGACAAACCTGGGCAACATC
GTCTGTGCGGCAAGGACGAAGACGAAGAAATCTTGGGCAGCTCGGACCTG
ACGATGTACTTGGCTTACAATACACCACCAACCATACGCCACACTACACA
CAGGTCATACCACTGTGTATCCTAGTCACTCTCGCATAAGCTTGTCAAGT
CGCCGCCGCTTCTCAACGAGTATTTTTTTACCAAGCCGACCCACGAGAGG
AAAAAAGAGAAGGCTCGTTTTCTTCGGAGCACCTCCTGCTCCACCACCGC
CACTGCGACAAAGCAAGCACCACCACCACGCGAACAATACAACATACGGA
GCATGGCTGATATTTCTGTTACCCCTATAGAAGACGCCGTCGAAACTGTG
GCCCTTTCCCCCATGCCTGTGATCGAGCAGGAACAAGAACACCAGCAGCT
GAAGCACGAGGCTCCCGATCAAGAAGGACTGCAGCAGCAGGAAGACCATC
AGCACCAAGTGCACCAGCAAGAACAAGAGCAACATCAGCCGAAGATAGAT
GTGCACGAACCCCCACAATCCGCGCCGTTCGTGGCTCCCGGTGAGGTGGA
CGTGGTGCCTGCGCCTCTGATCCTCTCGCAGCTCCCATGCATGCCTTCCA
AAGGCCCCACCTCGACTATTGCCACCAGGAAAAGCAGCATTTTAAGTGGC
GGCACAGGAAACCAAGGCCGATGGACAGAAGCAGAACATGAGTTGTTCTT
GGAGGGCATTGATACGTATGGGAAGGGGGCGTGGAAGGTGATTAGTGAGA
AGGTTGTCAAGTCCCGGAGTGCGGAGCAGGTGAGGATACACGCGCAGAAG
TATTTCCTACGGCAGACAAAGCAGCAGAGCAAGAAGAAAAATGACGATGT
CGCTGGTAGTTGTACTTTCAGGGGGGGAGGAGGG back to topprotein sequence of jgi.p|Nanoce1779_2|573578 >mRNA_630-protein ID=mRNA_630-protein|Name=jgi.p|Nanoce1779_2|573578|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MPGSLLPRRPPSTIVVLLLFLILQVMLAAARRSCASYRPVSVTLALVPTS
GTTSATRTSFGRSAPAMSTKGAAFKTLAAPTEYEEVIKKSRFLTHAVSAT
SFAEAQDFLKRVSDLKATHNCWGWRGRGEERSSDDGEPGGTAGRPILSAI
ESEELVDVVVVVTRYFGGIKLGAGGLVRAYGGVARTCLRNAETVTHIPKV
LVRLIAPLAMSGAVFQTISRVEKVGEDYTAEEVMVDVKVEASQVEGLRQQ
LQDATKGAGRLEEKA* back to topmRNA from alignment at scaffold_2:49157..52078- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_630 ID=mRNA_630|Name=jgi.p|Nanoce1779_2|573578|organism=Nannochloropsis oceanica|type=mRNA|length=2922bp|location=Sequence derived from alignment at scaffold_2:49157..52078- (Nannochloropsis oceanica)
AATAACAGTAAGATCAAAAAGCTGAAGGGGGGAGCGCTCTTTATTTCGCG
GGCGCTAGCCATGCCCGGCAGCCTCCTGCCAAGACGCCCTCCCTCAACGA
TCGTCGTCCTGCTACTATTTTTAATTCTGCAAGTGATGCTTGCAGCCGCC
CGCCGTAGCTGCGCTAGCTATCGACCCGTCTCGGTCACTCTTGCATTAGT
TCCTACTTCTGGTACCACATCAGCAACGCGGACGTCTTTCGGAAGAAGCG
CTCCCGCAATGTCGACCAAGGGTGCAGCATTTAAGACTTTGGCAGCACCC
ACCGAGTACGAAGAGGTACGTCGGCGGCAAGAAGCGAAATGGCAAGGGAT
AACAGGAAGGTTTCACTCAAGAATGTCCTACCTCCTTTCCGCCTATTTTC
TCAAGGCTTTTTCCCCCGCCCTTCCCATCAGTCCTGCCCCTCAAGCCCTC
AGCCTCTCGCCCACTGCTTCCTTGCCCCCCTGGCATCTCTCCCCTTATCC
TTCCCTCTTTTCCCAGGTCATTAAAAAGTCTCGCTTCTTGACTCACGCCG
TCTCTGCTACGTCATTTGCCGAAGCCCAGGACTTCTTGAAGCGGGTGTCT
GATTTGAAGGCCACGCATAATTGTTGGGGATGGCGGTACGTGAGGAGGGA
GACTTTGCGTTCTTCGGTGGGCGGGTGAGACAAGAGTGGAACACGAGTGT
ATGCTCTGCGTCCATCAAAAAGATTGTTTTCCGAAATGATGCATGCATAC
ACGCACGACAACAATACTTACTCCACTTGTCCTCTCTCTCTCCTACCTCC
CTTAACAAATGAACAGCGGACGAGGCGAAGAGCGTAGTTCGGACGATGGC
GAGCCTGGCGGGACGGCCGGGCGGCCCATCCTCTCTGCCATAGAAAGCGA
GGAGTTGGTGGACGTGGTTGTGGTGGTGACAAGGTAATGTTATGAAAAGA
GCGGAGGGAAGGAGGGATGGGGGGAGGGAGGGAAGAGAAGGTCGATGTTG
TTAAGGAGGGGAGGGAGGGGATGAGGTTGATGAGCCCTTTTTTCTGCATG
CACTTCCTTCAGCTATGTACCAATATTATTGATTTTAAGCCCGCTTATCG
TTAAATTAAAATTAAACAAGGTATTTTGGGGGCATTAAGCTTGGCGCTGG
TGGCCTGGTGCGGGCGTATGGCGGCGTGGCGCGAACATGTTTGAGGAACG
CAGAGACAGTGACTCATATTCCCAAGGTTTTGGTGCGATTGATAGCACCT
TTGGCCATGTCGGGGGCAGTCTTCCAGGTGAGTGTTCATAAATTTTATTT
CTAAACTAATTTATACTATTTTATGCTATGTATTTCTATTTCATTTACTT
GTTCGAACTCCATTTCATCGAAACTTCCATCAAAACCCCACGACAGACCA
TCAGTCGTGTTGAGAAGGTAGGGGAGGACTACACGGCTGAGGAGGTGATG
GTGGACGTCAAGGTGGAGGCGAGTCAAGTGGAGGGACTGCGGCAGCAGCT
GCAGGACGCCACCAAGGGGGCAGGAAGGTTGGAAGAAAAAGCATGAAAAG
AAATGAACTTAAAGAAATGGTTTACAATCACAACGAACAAATTGACATGC
ACCAAGCACGCACATTCCTTTTCCTTCTCGTCTACGACAGTTCCAAAAAA
GGGATAACGATGAGTGCACACTCGCACTCGCAGCCACAGCTTGGAAACAC
CATTGCACAGCCACTCGACCCAGCCTGCTTTTGTTTTAAGACGAGAACAT
CTTGTGCACAAGGAAACAAAGATGCCCAGTCAGGGGCTTTCTTAAATTGC
TTAGAAAGGCGTCGAAACTAGAAGATCGAAAGGCGTGCGTGCGGACGAGA
CAACAATGAAGTAAAAAGAGGGCGAGCCGGCACGGTCCGTGCTTCTAATT
TGCCAGATCATTCCCTCCTGCGCCCTACCAAGCGTCCCCGACACGCCCTC
CCTTCCCATTCAAACAGTGCCGTATTGTGGCAGACGGACGTAGGAGTGGG
AAGACTCCTGTAGTCCACTGACAAACCTGGGCAACATCGTCTGTGCGGCA
AGGACGAAGACGAAGAAATCTTGGGCAGCTCGGACCTGACGATGTACTTG
GCTTACAATACACCACCAACCATACGCCACACTACACACAGGTCATACCA
CTGTGTATCCTAGTCACTCTCGCATAAGCTTGTCAAGTCGCCGCCGCTTC
TCAACGAGTATTTTTTTACCAAGCCGACCCACGAGAGGAAAAAAGAGAAG
GCTCGTTTTCTTCGGAGCACCTCCTGCTCCACCACCGCCACTGCGACAAA
GCAAGCACCACCACCACGCGAACAATACAACATACGGAGCATGGCTGATA
TTTCTGTTACCCCTATAGAAGACGCCGTCGAAACTGTGGCCCTTTCCCCC
ATGCCTGTGATCGAGCAGGAACAAGAACACCAGCAGCTGAAGCACGAGGC
TCCCGATCAAGAAGGACTGCAGCAGCAGGAAGACCATCAGCACCAAGTGC
ACCAGCAAGAACAAGAGCAACATCAGCCGAAGATAGATGTGCACGAACCC
CCACAATCCGCGCCGTTCGTGGCTCCCGGTGAGGTGGACGTGGTGCCTGC
GCCTCTGATCCTCTCGCAGCTCCCATGCATGCCTTCCAAAGGCCCCACCT
CGACTATTGCCACCAGGAAAAGCAGCATTTTAAGTGGCGGCACAGGAAAC
CAAGGCCGATGGACAGAAGCAGAACATGAGTTGTTCTTGGAGGGCATTGA
TACGTATGGGAAGGGGGCGTGGAAGGTGATTAGTGAGAAGGTTGTCAAGT
CCCGGAGTGCGGAGCAGGTGAGGATACACGCGCAGAAGTATTTCCTACGG
CAGACAAAGCAGCAGAGCAAGAAGAAAAATGACGATGTCGCTGGTAGTTG
TACTTTCAGGGGGGGAGGAGGG back to topCoding sequence (CDS) from alignment at scaffold_2:49157..52078- >mRNA_630 ID=mRNA_630|Name=jgi.p|Nanoce1779_2|573578|organism=Nannochloropsis oceanica|type=CDS|length=3990bp|location=Sequence derived from alignment at scaffold_2:49157..52078- (Nannochloropsis oceanica)
ACCATCAGTCGTGTTGAGAAGGTAGGGGAGGACTACACGGCTGAGGAGGT
GATGGTGGACGTCAAGGTGGAGGCGAGTCAAGTGGAGGGACTGCGGCAGC
AGCTGCAGGACGCCACCAAGGGGGCAGGAAGGTTGGAAGAAAAAGCATGA
GTATTTTGGGGGCATTAAGCTTGGCGCTGGTGGCCTGGTGCGGGCGTATG
GCGGCGTGGCGCGAACATGTTTGAGGAACGCAGAGACAGTGACTCATATT
CCCAAGGTTTTGGTGCGATTGATAGCACCTTTGGCCATGTCGGGGGCAGT
CTTCCAGCGGACGAGGCGAAGAGCGTAGTTCGGACGATGGCGAGCCTGGC
GGGACGGCCGGGCGGCCCATCCTCTCTGCCATAGAAAGCGAGGAGTTGGT
GGACGTGGTTGTGGTGGTGACAAGGTCATTAAAAAGTCTCGCTTCTTGAC
TCACGCCGTCTCTGCTACGTCATTTGCCGAAGCCCAGGACTTCTTGAAGC
GGGTGTCTGATTTGAAGGCCACGCATAATTGTTGGGGATGGCGATGCCCG
GCAGCCTCCTGCCAAGACGCCCTCCCTCAACGATCGTCGTCCTGCTACTA
TTTTTAATTCTGCAAGTGATGCTTGCAGCCGCCCGCCGTAGCTGCGCTAG
CTATCGACCCGTCTCGGTCACTCTTGCATTAGTTCCTACTTCTGGTACCA
CATCAGCAACGCGGACGTCTTTCGGAAGAAGCGCTCCCGCAATGTCGACC
AAGGGTGCAGCATTTAAGACTTTGGCAGCACCCACCGAGTACGAAGAGAC
CATCAGTCGTGTTGAGAAGGTAGGGGAGGACTACACGGCTGAGGAGGTGA
TGGTGGACGTCAAGGTGGAGGCGAGTCAAGTGGAGGGACTGCGGCAGCAG
CTGCAGGACGCCACCAAGGGGGCAGGAAGGTTGGAAGAAAAAGCATGAGT
ATTTTGGGGGCATTAAGCTTGGCGCTGGTGGCCTGGTGCGGGCGTATGGC
GGCGTGGCGCGAACATGTTTGAGGAACGCAGAGACAGTGACTCATATTCC
CAAGGTTTTGGTGCGATTGATAGCACCTTTGGCCATGTCGGGGGCAGTCT
TCCAGCGGACGAGGCGAAGAGCGTAGTTCGGACGATGGCGAGCCTGGCGG
GACGGCCGGGCGGCCCATCCTCTCTGCCATAGAAAGCGAGGAGTTGGTGG
ACGTGGTTGTGGTGGTGACAAGGTCATTAAAAAGTCTCGCTTCTTGACTC
ACGCCGTCTCTGCTACGTCATTTGCCGAAGCCCAGGACTTCTTGAAGCGG
GTGTCTGATTTGAAGGCCACGCATAATTGTTGGGGATGGCGATGCCCGGC
AGCCTCCTGCCAAGACGCCCTCCCTCAACGATCGTCGTCCTGCTACTATT
TTTAATTCTGCAAGTGATGCTTGCAGCCGCCCGCCGTAGCTGCGCTAGCT
ATCGACCCGTCTCGGTCACTCTTGCATTAGTTCCTACTTCTGGTACCACA
TCAGCAACGCGGACGTCTTTCGGAAGAAGCGCTCCCGCAATGTCGACCAA
GGGTGCAGCATTTAAGACTTTGGCAGCACCCACCGAGTACGAAGAGACCA
TCAGTCGTGTTGAGAAGGTAGGGGAGGACTACACGGCTGAGGAGGTGATG
GTGGACGTCAAGGTGGAGGCGAGTCAAGTGGAGGGACTGCGGCAGCAGCT
GCAGGACGCCACCAAGGGGGCAGGAAGGTTGGAAGAAAAAGCATGAGTAT
TTTGGGGGCATTAAGCTTGGCGCTGGTGGCCTGGTGCGGGCGTATGGCGG
CGTGGCGCGAACATGTTTGAGGAACGCAGAGACAGTGACTCATATTCCCA
AGGTTTTGGTGCGATTGATAGCACCTTTGGCCATGTCGGGGGCAGTCTTC
CAGCGGACGAGGCGAAGAGCGTAGTTCGGACGATGGCGAGCCTGGCGGGA
CGGCCGGGCGGCCCATCCTCTCTGCCATAGAAAGCGAGGAGTTGGTGGAC
GTGGTTGTGGTGGTGACAAGGTCATTAAAAAGTCTCGCTTCTTGACTCAC
GCCGTCTCTGCTACGTCATTTGCCGAAGCCCAGGACTTCTTGAAGCGGGT
GTCTGATTTGAAGGCCACGCATAATTGTTGGGGATGGCGATGCCCGGCAG
CCTCCTGCCAAGACGCCCTCCCTCAACGATCGTCGTCCTGCTACTATTTT
TAATTCTGCAAGTGATGCTTGCAGCCGCCCGCCGTAGCTGCGCTAGCTAT
CGACCCGTCTCGGTCACTCTTGCATTAGTTCCTACTTCTGGTACCACATC
AGCAACGCGGACGTCTTTCGGAAGAAGCGCTCCCGCAATGTCGACCAAGG
GTGCAGCATTTAAGACTTTGGCAGCACCCACCGAGTACGAAGAGACCATC
AGTCGTGTTGAGAAGGTAGGGGAGGACTACACGGCTGAGGAGGTGATGGT
GGACGTCAAGGTGGAGGCGAGTCAAGTGGAGGGACTGCGGCAGCAGCTGC
AGGACGCCACCAAGGGGGCAGGAAGGTTGGAAGAAAAAGCATGAGTATTT
TGGGGGCATTAAGCTTGGCGCTGGTGGCCTGGTGCGGGCGTATGGCGGCG
TGGCGCGAACATGTTTGAGGAACGCAGAGACAGTGACTCATATTCCCAAG
GTTTTGGTGCGATTGATAGCACCTTTGGCCATGTCGGGGGCAGTCTTCCA
GCGGACGAGGCGAAGAGCGTAGTTCGGACGATGGCGAGCCTGGCGGGACG
GCCGGGCGGCCCATCCTCTCTGCCATAGAAAGCGAGGAGTTGGTGGACGT
GGTTGTGGTGGTGACAAGGTCATTAAAAAGTCTCGCTTCTTGACTCACGC
CGTCTCTGCTACGTCATTTGCCGAAGCCCAGGACTTCTTGAAGCGGGTGT
CTGATTTGAAGGCCACGCATAATTGTTGGGGATGGCGATGCCCGGCAGCC
TCCTGCCAAGACGCCCTCCCTCAACGATCGTCGTCCTGCTACTATTTTTA
ATTCTGCAAGTGATGCTTGCAGCCGCCCGCCGTAGCTGCGCTAGCTATCG
ACCCGTCTCGGTCACTCTTGCATTAGTTCCTACTTCTGGTACCACATCAG
CAACGCGGACGTCTTTCGGAAGAAGCGCTCCCGCAATGTCGACCAAGGGT
GCAGCATTTAAGACTTTGGCAGCACCCACCGAGTACGAAGAGACCATCAG
TCGTGTTGAGAAGGTAGGGGAGGACTACACGGCTGAGGAGGTGATGGTGG
ACGTCAAGGTGGAGGCGAGTCAAGTGGAGGGACTGCGGCAGCAGCTGCAG
GACGCCACCAAGGGGGCAGGAAGGTTGGAAGAAAAAGCATGAGTATTTTG
GGGGCATTAAGCTTGGCGCTGGTGGCCTGGTGCGGGCGTATGGCGGCGTG
GCGCGAACATGTTTGAGGAACGCAGAGACAGTGACTCATATTCCCAAGGT
TTTGGTGCGATTGATAGCACCTTTGGCCATGTCGGGGGCAGTCTTCCAGC
GGACGAGGCGAAGAGCGTAGTTCGGACGATGGCGAGCCTGGCGGGACGGC
CGGGCGGCCCATCCTCTCTGCCATAGAAAGCGAGGAGTTGGTGGACGTGG
TTGTGGTGGTGACAAGGTCATTAAAAAGTCTCGCTTCTTGACTCACGCCG
TCTCTGCTACGTCATTTGCCGAAGCCCAGGACTTCTTGAAGCGGGTGTCT
GATTTGAAGGCCACGCATAATTGTTGGGGATGGCGATGCCCGGCAGCCTC
CTGCCAAGACGCCCTCCCTCAACGATCGTCGTCCTGCTACTATTTTTAAT
TCTGCAAGTGATGCTTGCAGCCGCCCGCCGTAGCTGCGCTAGCTATCGAC
CCGTCTCGGTCACTCTTGCATTAGTTCCTACTTCTGGTACCACATCAGCA
ACGCGGACGTCTTTCGGAAGAAGCGCTCCCGCAATGTCGACCAAGGGTGC
AGCATTTAAGACTTTGGCAGCACCCACCGAGTACGAAGAG back to top
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