jgi.p|Nanoce1779_2|594506, mRNA_6298 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|594506
Unique Name	mRNA_6298
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1757
Alignment location	scaffold_15:282307..284350 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	594592
Track	FilteredModels2
ProteinId	594506

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:282307..284350 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594506	gene_6298	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594506	mRNA_6298-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6298	CDS_6298	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:282307..284350+
coding sequence from alignment at scaffold_15:282307..284350+

mRNA sequence

>mRNA_6298 ID=mRNA_6298|Name=jgi.p|Nanoce1779_2|594506|organism=Nannochloropsis oceanica|type=mRNA|length=1757bp
AGGCTACCAAGCAGTTGTCTCTCGACTTCCCCTCATCCTCGTCCGACGAC
CAGCCACCATCACCATGGCCGAGGCGACGACGACGACGGCAGAGATCACA
GCAAACGGGACGGCCAAGCCGGGTCCCGCTGTAAAAATCGATGTGACGGA
GATTGCGAAGCCCTACCGCGAGGAGGTCCGTACCGCCATCCGAGACAAGT
GCGGCGGCGTGGGCCCGAAGCTGGTAGCTTTTTTGGCCAACACGGACCCT
TACGCTCGTCAGTATGCCGAATGGACTGGCCGTGCCTGCGAGGCGGACGG
CATCCGCTACGAGCTCCGCATCATCACTGAAAATGAGCTGGAGGAGAAGC
TATATGAAGCCAACGAAGATCCAAGTGTGCATGGGATATTAATATACTAC
CCGGTCTTCGGGTTCTTCCCTTCTTTTTATGGTGGGTCGATGGACGATTA
TTTGAGGGATTCGGTGTCGTTTAAGAAGGACGTGGAAGGGCTGTCCTTCA
CTTACCGCTTTAATCTCTATAGAAACATTCGGTTCATGGACGCCCCATCT
TCCCTCCCTCCGTCGTCCTCCGGTAATCCCTCCCAAAGGCCGTCTGCTTT
CGCACCACAATTGAAGTGTCTGTTGCCGTGCACCGCGTTGAGTGTTGTGA
AGATCCTCGAAACCATCGGCGGGTACAATTTGGACCTGCCCATCGGTGAG
AGGATGAAAGGCAAGGTCGTGAGTATCATCAATCGAAGTGAGATTGTGGG
GAGGCCTCTCGGCGCGCTCTTGGCGAACGATGGCGCGGACATTTTCTCTG
TCGATATCGACTCGATCTACCATTTCCGTCGAGGCCAACTGCTCAAAACG
ACCGAAACGCCTGAAAGCGCCGTTCGACGCTCGGACGTCATTGTCTGTGG
TGTCCCAGTAAAAAGCTACAAGCTCCCCACGGCATGGGTGAAGCCCGGGG
CGATCGTCGTTAACGTCGCCAGTTACAAAAACGTCAACGAGGAAGAGCTC
CTCAACGTCCCGGGGGTGAAGTATGTACCATTGGTGGGAAAAGTGACAAT
TGCCATGCTAGAACGAAATCTGATCCGACTGTACGAGCAGTACCACGCCG
AAGCTTCGCCGGGAAAGGACTTCAAGTACGTGTTGGAAAACCGACCTCCT
ATGCTGAAGGGTTGAAGGAGGGAAGGAAGAAAGGAGGAGGGAGGTTGGAT
CGATGGCGGCTGCGACGTGGGATGTGAGGACAGGAGAGAGAAAGGGTTTT
TGATAGAGAATGCAAGAAAACCACACCAATTTTGATGCAAAAGAACATAT
ACAAATATTTTCAAAGGGAGCGATGCGCCGCAAAGAGGAGGAGGAGGAGG
ATGAGGAAGAGGAGGAAAAGGAGGAGACATGGGCAAGGCAAGTTTTTAAT
TGAAGATGGCACTGCAATTTAGACAAGGGAGGAAGGGAAAAAGGACGTAG
AAGAGCCGTGACAGATACATAGCTTCTGGGAACATTTTTGAGGCCTCACT
TTTGATAATTTATAGAGATAGCGGACATAATTGAAGATGAAGAGCCGGCG
TGGTAGTTGGATGGGTGGGCATGAAGACGAGGAGGGTGGTGATTTGGCGA
TCACTGTTGTTCCCTACCACGTCCTTCCCATTTCATTGAATGGAGCTTGG
TGGCATGGTTGCCCAGGGCCAAGATTGAGAGTTAAAGCCTTAAAAAAGAA
AAGCCATTAATATTTTTGAAGGGTAGAAGTGAAAAGAAGGAAGAGAAGAG
GAAGTCG

protein sequence of jgi.p|Nanoce1779_2|594506

>mRNA_6298-protein ID=mRNA_6298-protein|Name=jgi.p|Nanoce1779_2|594506|organism=Nannochloropsis oceanica|type=polypeptide|length=367bp
MAEATTTTAEITANGTAKPGPAVKIDVTEIAKPYREEVRTAIRDKCGGVG
PKLVAFLANTDPYARQYAEWTGRACEADGIRYELRIITENELEEKLYEAN
EDPSVHGILIYYPVFGFFPSFYGGSMDDYLRDSVSFKKDVEGLSFTYRFN
LYRNIRFMDAPSSLPPSSSGNPSQRPSAFAPQLKCLLPCTALSVVKILET
IGGYNLDLPIGERMKGKVVSIINRSEIVGRPLGALLANDGADIFSVDIDS
IYHFRRGQLLKTTETPESAVRRSDVIVCGVPVKSYKLPTAWVKPGAIVVN
VASYKNVNEEELLNVPGVKYVPLVGKVTIAMLERNLIRLYEQYHAEASPG
KDFKYVLENRPPMLKG*

mRNA from alignment at scaffold_15:282307..284350+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6298 ID=mRNA_6298|Name=jgi.p|Nanoce1779_2|594506|organism=Nannochloropsis oceanica|type=mRNA|length=2044bp|location=Sequence derived from alignment at scaffold_15:282307..284350+ (Nannochloropsis oceanica)
AGGCTACCAAGCAGTTGTCTCTCGACTTCCCCTCATCCTCGTCCGACGAC
CAGCCACCATCACCATGGCCGAGGCGACGACGACGACGGCAGAGATCACA
GCAAACGGGACGGCCAAGCCGGGTCCCGCTGTAAAAATCGATGTGACGGA
GATTGCGAAGCCCTACCGCGAGGAGGTCCGTACCGCCATCCGAGACAAGT
GCGGCGGCGTGGGCCCGAAGCTGGTAGCTTTTTTGGCCAACACGGTGAGA
CATGGCTAATAATCTGCACGTCCATGATATTCCGTGTTTGTGCGCGTGCG
CGTATGTATACGTACCAAGAGAAGTGGGTGTCAGGGGTCATCATGGTGGG
TGGGTTGGGGTGGGGGAGAGTGGTAGACTATTGCTGTCCACCGCGTCTTC
TCATGTCCCTGTCGTTACGCCTACGATTTATGCCAAAATGCCCCTGCTTG
TTCGATGCGCAGTCTCAGTATCGCATCCGCTGACCTGACAAGTCCTCCTC
CCTCTATTCCTTCCCCAATTCCTGCCCACAGGACCCTTACGCTCGTCAGT
ATGCCGAATGGACTGGCCGTGCCTGCGAGGCGGACGGCATCCGCTACGAG
CTCCGCATCATCACTGAAAATGAGCTGGAGGAGAAGCTATATGAAGCCAA
CGAAGATCCAAGTGTGCATGGGATATTAATATACTACCCGGTCTTCGGGT
TCTTCCCTTCTTTTTATGGTGGGTCGATGGACGATTATTTGAGGGATTCG
GTGTCGTTTAAGAAGGACGTGGAAGGGCTGTCCTTCACTTACCGCTTTAA
TCTCTATAGAAACATTCGGTTCATGGACGCCCCATCTTCCCTCCCTCCGT
CGTCCTCCGGTAATCCCTCCCAAAGGCCGTCTGCTTTCGCACCACAATTG
AAGTGTCTGTTGCCGTGCACCGCGTTGAGTGTTGTGAAGATCCTCGAAAC
CATCGGCGGGTACAATTTGGACCTGCCCATCGGTGAGAGGATGAAAGGCA
AGGTCGTGAGTATCATCAATCGAAGTGAGATTGTGGGGAGGCCTCTCGGC
GCGCTCTTGGCGAACGATGGCGCGGACATTTTCTCTGTCGATATCGACTC
GATCTACCATTTCCGTCGAGGCCAACTGCTCAAAACGACCGAAACGCCTG
AAAGCGCCGTTCGACGCTCGGACGTCATTGTCTGTGGTGTCCCAGTAAAA
AGCTACAAGCTCCCCACGGCATGGGTGAAGCCCGGGGCGATCGTCGTTAA
CGTCGCCAGTTACAAAAACGTCAACGAGGAAGAGCTCCTCAACGTCCCGG
GGGTGAAGTATGTACCATTGGTGGGAAAAGTGACAATTGCCATGCTAGAA
CGAAATCTGATCCGACTGTACGAGCAGTACCACGCCGAAGCTTCGCCGGG
AAAGGACTTCAAGTACGTGTTGGAAAACCGACCTCCTATGCTGAAGGGTT
GAAGGAGGGAAGGAAGAAAGGAGGAGGGAGGTTGGATCGATGGCGGCTGC
GACGTGGGATGTGAGGACAGGAGAGAGAAAGGGTTTTTGATAGAGAATGC
AAGAAAACCACACCAATTTTGATGCAAAAGAACATATACAAATATTTTCA
AAGGGAGCGATGCGCCGCAAAGAGGAGGAGGAGGAGGATGAGGAAGAGGA
GGAAAAGGAGGAGACATGGGCAAGGCAAGTTTTTAATTGAAGATGGCACT
GCAATTTAGACAAGGGAGGAAGGGAAAAAGGACGTAGAAGAGCCGTGACA
GATACATAGCTTCTGGGAACATTTTTGAGGCCTCACTTTTGATAATTTAT
AGAGATAGCGGACATAATTGAAGATGAAGAGCCGGCGTGGTAGTTGGATG
GGTGGGCATGAAGACGAGGAGGGTGGTGATTTGGCGATCACTGTTGTTCC
CTACCACGTCCTTCCCATTTCATTGAATGGAGCTTGGTGGCATGGTTGCC
CAGGGCCAAGATTGAGAGTTAAAGCCTTAAAAAAGAAAAGCCATTAATAT
TTTTGAAGGGTAGAAGTGAAAAGAAGGAAGAGAAGAGGAAGTCG

Coding sequence (CDS) from alignment at scaffold_15:282307..284350+

>mRNA_6298 ID=mRNA_6298|Name=jgi.p|Nanoce1779_2|594506|organism=Nannochloropsis oceanica|type=CDS|length=2202bp|location=Sequence derived from alignment at scaffold_15:282307..284350+ (Nannochloropsis oceanica)
ATGGCCGAGGCGACGACGACGACGGCAGAGATCACAGCAAACGGGACGGC
CAAGCCGGGTCCCGCTGTAAAAATCGATGTGACGGAGATTGCGAAGCCCT
ACCGCGAGGAGGTCCGTACCGCCATCCGAGACAAGTGCGGCGGCGTGGGC
CCGAAGCTGGTAGCTTTTTTGGCCAACACGGACCCTTACGCTCGTCAGTA
TGCCGAATGGACTGGCCGTGCCTGCGAGGCGGACGGCATCCGCTACGAGC
TCCGCATCATCACTGAAAATGAGCTGGAGGAGAAGCTATATGAAGCCAAC
GAAGATCCAAGTGTGCATGGGATATTAATATACTACCCGGTCTTCGGGTT
CTTCCCTTCTTTTTATGGTGGGTCGATGGACGATTATTTGAGGGATTCGG
TGTCGTTTAAGAAGGACGTGGAAGGGCTGTCCTTCACTTACCGCTTTAAT
CTCTATAGAAACATTCGGTTCATGGACGCCCCATCTTCCCTCCCTCCGTC
GTCCTCCGGTAATCCCTCCCAAAGGCCGTCTGCTTTCGCACCACAATTGA
AGTGTCTGTTGCCGTGCACCGCGTTGAGTGTTGTGAAGATCCTCGAAACC
ATCGGCGGGTACAATTTGGACCTGCCCATCGGTGAGAGGATGAAAGGCAA
GGTCGTGAGTATCATCAATCGAAGTGAGATTGTGGGGAGGCCTCTCGGCG
CGCTCTTGGCGAACGATGGCGCGGACATTTTCTCTGTCGATATCGACTCG
ATCTACCATTTCCGTCGAGGCCAACTGCTCAAAACGACCGAAACGCCTGA
AAGCGCCGTTCGACGCTCGGACGTCATTGTCTGTGGTGTCCCAGTAAAAA
GCTACAAGCTCCCCACGGCATGGGTGAAGCCCGGGGCGATCGTCGTTAAC
GTCGCCAGTTACAAAAACGTCAACGAGGAAGAGCTCCTCAACGTCCCGGG
GGTGAAGTATGTACCATTGGTGGGAAAAGTGACAATTGCCATGCTAGAAC
GAAATCTGATCCGACTGTACGAGCAGTACCACGCCGAAGCTTCGCCGGGA
AAGGACTTCAAGTACGTGTTGGAAAACCGACCTCCTATGCTGAAGGGTTG
AATGGCCGAGGCGACGACGACGACGGCAGAGATCACAGCAAACGGGACGG
CCAAGCCGGGTCCCGCTGTAAAAATCGATGTGACGGAGATTGCGAAGCCC
TACCGCGAGGAGGTCCGTACCGCCATCCGAGACAAGTGCGGCGGCGTGGG
CCCGAAGCTGGTAGCTTTTTTGGCCAACACGGACCCTTACGCTCGTCAGT
ATGCCGAATGGACTGGCCGTGCCTGCGAGGCGGACGGCATCCGCTACGAG
CTCCGCATCATCACTGAAAATGAGCTGGAGGAGAAGCTATATGAAGCCAA
CGAAGATCCAAGTGTGCATGGGATATTAATATACTACCCGGTCTTCGGGT
TCTTCCCTTCTTTTTATGGTGGGTCGATGGACGATTATTTGAGGGATTCG
GTGTCGTTTAAGAAGGACGTGGAAGGGCTGTCCTTCACTTACCGCTTTAA
TCTCTATAGAAACATTCGGTTCATGGACGCCCCATCTTCCCTCCCTCCGT
CGTCCTCCGGTAATCCCTCCCAAAGGCCGTCTGCTTTCGCACCACAATTG
AAGTGTCTGTTGCCGTGCACCGCGTTGAGTGTTGTGAAGATCCTCGAAAC
CATCGGCGGGTACAATTTGGACCTGCCCATCGGTGAGAGGATGAAAGGCA
AGGTCGTGAGTATCATCAATCGAAGTGAGATTGTGGGGAGGCCTCTCGGC
GCGCTCTTGGCGAACGATGGCGCGGACATTTTCTCTGTCGATATCGACTC
GATCTACCATTTCCGTCGAGGCCAACTGCTCAAAACGACCGAAACGCCTG
AAAGCGCCGTTCGACGCTCGGACGTCATTGTCTGTGGTGTCCCAGTAAAA
AGCTACAAGCTCCCCACGGCATGGGTGAAGCCCGGGGCGATCGTCGTTAA
CGTCGCCAGTTACAAAAACGTCAACGAGGAAGAGCTCCTCAACGTCCCGG
GGGTGAAGTATGTACCATTGGTGGGAAAAGTGACAATTGCCATGCTAGAA
CGAAATCTGATCCGACTGTACGAGCAGTACCACGCCGAAGCTTCGCCGGG
AAAGGACTTCAAGTACGTGTTGGAAAACCGACCTCCTATGCTGAAGGGTT
GA

Synonyms

Publications