jgi.p|Nanoce1779_2|543791, mRNA_6297 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|543791
Unique NamemRNA_6297
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1890
Alignment locationscaffold_15:280039..281928 -

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Properties
Property NameValue
TranscriptId543877
TrackFilteredModels2
ProteinId543791
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:280039..281928 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|543791gene_6297Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|543791mRNA_6297-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6297CDS_6297Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6297 ID=mRNA_6297|Name=jgi.p|Nanoce1779_2|543791|organism=Nannochloropsis oceanica|type=mRNA|length=1890bp
GAGAAACAATCGAATCATCGTTCCGAGCCACGCACGTAACACTGCTCGCC
CACGACCCCTGCTCGCCTGTGTTTGCACCGGACATGCCGCAATGCCCAAA
GTCCTGGCGTGCTAATTAAACTTAATTCTTCTTTTTGCGTCTCAAATAAG
CAGAGAAGGTTGCGGGCACTCTCAAGTTCTAGCTTTTGGCACGCATGTTT
TACTCGCTTCACTCGCCACAACCACCCACGTAGGATTGAGATTCCTGCCA
CGCCATAACGCTTCATCACATGCACTTTCCAAGGCTGTATGGCACACAAG
AGCCTCTTACGCCCACTTTCCTTTGTTGACACTGAGCCACGGCCCTCCTT
TGTCTCAAGCCATCCCTCCCCCAACACAACACAAAACTCACAGGCTCGCT
TCTTCGATCGAGACCCTCTACCTTTCCTGCAGCACCATGCTCCGTCTCCT
CCCAAACAGGCCCCTGTGCCGTGGCTTTGCGGTCGCTGCCGCCCAGAAGA
AGAAGACCATCGCAGATCTCAGCAAGGAGGTGTCGCTTAAGGGGAAGAAT
GTCTTTGTCCGCGCCGATCTGAACGTGCCTGTTAAGGGCGGCGCTGTGAA
GGACAAGACCCGCATCAACCTCTCGGCGCCCACCATTCGATACCTTCTCG
ACCAAGGCGCTAAGGTGGTGGTCAGCAGTCACTTGGGACGACCGAAGGGG
CAAGTGATGGAGGATAAGCGTTTGACACCTGTTGCTGCGGTGCTGGAGGC
GGCCATAAGGGCCCCTGTCCGCTTGGCGCCGGACTCGGCCGGGCCCGAGG
CAGCTGCCTTTGTCAAGAACACTTCAGCTGGAGAGGTAGTGCTCCTAGAA
AACACTCGTTTCCACGCGGGGGAGACGAAGAACGACGAGGCATATGCGAA
GCAATTGCACGAGGTATCCGGCGCTGATATTTACGTAAATGACGCGTTTG
GGGCGGCGCATCGGGCGCACGCGTCCACGCATGGGATCACGAAGTTTGTG
TCTCACAAGGTGGCAGGATTACTGCTTGACAAGGAGTTGACGGCCTTGGG
CACGATCATGACGAGCCCAGAGCACCCGGTGGTGGCGTGCATTGGGGGGT
CGAAGGTATCGACGAAGCTGCCGGTGCTGGAGAGCTTGCTTGCCAAGTGC
GACACGATTCTGATTGGTGGGGGGATGATGTTTACGTTTTCCAAAGCCCA
GGGATATCACATCGGACGGAGTTTGGTGGAGGAGGATTTGGTGCCGATGG
CGAAAGAGTTTCTGGCTAAGGCCAAGGCGAAGGGTGTGAAGGTGGTGTTG
CCGCGTGATTTTGTGGTGGCCCCGGACCTGGAGGAGGCGAGCAGTAGCAA
AGCGCTGCATGCGGATGTGGCGAGCTACAAGGGGGATGGGATAGGAGTGG
ATATCGGGCCGTTGACGGTGGGCGACTTCCATAATGAGATCAAGGACGCC
AAGACGTTCTTTTGGAATGGCCCGATGGGAGTTATCGAGGTGCCACGTTA
CGCGCTGGGCACGGATGCCGTGACAAGGATGGCGGCTTTCTTGAGCCAAA
AAGGAGGTTTGGCGGTGGTGGGAGGAGGGGACTCTCTGGTGACGGTGCAG
AAGTTGGGCTTGTTTGACAAGATCACGCATGTTTCCACGGGCGGCGGGGC
CATGTTGGAGTTCGTGGAGGGCAAGGTGCTGCCAGGAGTGGAGGTGTTGG
ACAATAAGTAAATGATTTGTACTTATTAAAGCATGAATTAAGGCGGAGCG
GGCAATGCTGGCAAATTTCCTTCACGGGTTGGGTTGGGCTGGTTGCGGAG
GCAGGATGCGAGATGAGATGCTGGATTAGCAGCACTGCTGACGATGTTGA
GTCCACATATGAAAGAAACAAAACATACAACATGATGAAA
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protein sequence of jgi.p|Nanoce1779_2|543791

>mRNA_6297-protein ID=mRNA_6297-protein|Name=jgi.p|Nanoce1779_2|543791|organism=Nannochloropsis oceanica|type=polypeptide|length=425bp
MLRLLPNRPLCRGFAVAAAQKKKTIADLSKEVSLKGKNVFVRADLNVPVK
GGAVKDKTRINLSAPTIRYLLDQGAKVVVSSHLGRPKGQVMEDKRLTPVA
AVLEAAIRAPVRLAPDSAGPEAAAFVKNTSAGEVVLLENTRFHAGETKND
EAYAKQLHEVSGADIYVNDAFGAAHRAHASTHGITKFVSHKVAGLLLDKE
LTALGTIMTSPEHPVVACIGGSKVSTKLPVLESLLAKCDTILIGGGMMFT
FSKAQGYHIGRSLVEEDLVPMAKEFLAKAKAKGVKVVLPRDFVVAPDLEE
ASSSKALHADVASYKGDGIGVDIGPLTVGDFHNEIKDAKTFFWNGPMGVI
EVPRYALGTDAVTRMAAFLSQKGGLAVVGGGDSLVTVQKLGLFDKITHVS
TGGGAMLEFVEGKVLPGVEVLDNK*
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mRNA from alignment at scaffold_15:280039..281928-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6297 ID=mRNA_6297|Name=jgi.p|Nanoce1779_2|543791|organism=Nannochloropsis oceanica|type=mRNA|length=1890bp|location=Sequence derived from alignment at scaffold_15:280039..281928- (Nannochloropsis oceanica)
GAGAAACAATCGAATCATCGTTCCGAGCCACGCACGTAACACTGCTCGCC
CACGACCCCTGCTCGCCTGTGTTTGCACCGGACATGCCGCAATGCCCAAA
GTCCTGGCGTGCTAATTAAACTTAATTCTTCTTTTTGCGTCTCAAATAAG
CAGAGAAGGTTGCGGGCACTCTCAAGTTCTAGCTTTTGGCACGCATGTTT
TACTCGCTTCACTCGCCACAACCACCCACGTAGGATTGAGATTCCTGCCA
CGCCATAACGCTTCATCACATGCACTTTCCAAGGCTGTATGGCACACAAG
AGCCTCTTACGCCCACTTTCCTTTGTTGACACTGAGCCACGGCCCTCCTT
TGTCTCAAGCCATCCCTCCCCCAACACAACACAAAACTCACAGGCTCGCT
TCTTCGATCGAGACCCTCTACCTTTCCTGCAGCACCATGCTCCGTCTCCT
CCCAAACAGGCCCCTGTGCCGTGGCTTTGCGGTCGCTGCCGCCCAGAAGA
AGAAGACCATCGCAGATCTCAGCAAGGAGGTGTCGCTTAAGGGGAAGAAT
GTCTTTGTCCGCGCCGATCTGAACGTGCCTGTTAAGGGCGGCGCTGTGAA
GGACAAGACCCGCATCAACCTCTCGGCGCCCACCATTCGATACCTTCTCG
ACCAAGGCGCTAAGGTGGTGGTCAGCAGTCACTTGGGACGACCGAAGGGG
CAAGTGATGGAGGATAAGCGTTTGACACCTGTTGCTGCGGTGCTGGAGGC
GGCCATAAGGGCCCCTGTCCGCTTGGCGCCGGACTCGGCCGGGCCCGAGG
CAGCTGCCTTTGTCAAGAACACTTCAGCTGGAGAGGTAGTGCTCCTAGAA
AACACTCGTTTCCACGCGGGGGAGACGAAGAACGACGAGGCATATGCGAA
GCAATTGCACGAGGTATCCGGCGCTGATATTTACGTAAATGACGCGTTTG
GGGCGGCGCATCGGGCGCACGCGTCCACGCATGGGATCACGAAGTTTGTG
TCTCACAAGGTGGCAGGATTACTGCTTGACAAGGAGTTGACGGCCTTGGG
CACGATCATGACGAGCCCAGAGCACCCGGTGGTGGCGTGCATTGGGGGGT
CGAAGGTATCGACGAAGCTGCCGGTGCTGGAGAGCTTGCTTGCCAAGTGC
GACACGATTCTGATTGGTGGGGGGATGATGTTTACGTTTTCCAAAGCCCA
GGGATATCACATCGGACGGAGTTTGGTGGAGGAGGATTTGGTGCCGATGG
CGAAAGAGTTTCTGGCTAAGGCCAAGGCGAAGGGTGTGAAGGTGGTGTTG
CCGCGTGATTTTGTGGTGGCCCCGGACCTGGAGGAGGCGAGCAGTAGCAA
AGCGCTGCATGCGGATGTGGCGAGCTACAAGGGGGATGGGATAGGAGTGG
ATATCGGGCCGTTGACGGTGGGCGACTTCCATAATGAGATCAAGGACGCC
AAGACGTTCTTTTGGAATGGCCCGATGGGAGTTATCGAGGTGCCACGTTA
CGCGCTGGGCACGGATGCCGTGACAAGGATGGCGGCTTTCTTGAGCCAAA
AAGGAGGTTTGGCGGTGGTGGGAGGAGGGGACTCTCTGGTGACGGTGCAG
AAGTTGGGCTTGTTTGACAAGATCACGCATGTTTCCACGGGCGGCGGGGC
CATGTTGGAGTTCGTGGAGGGCAAGGTGCTGCCAGGAGTGGAGGTGTTGG
ACAATAAGTAAATGATTTGTACTTATTAAAGCATGAATTAAGGCGGAGCG
GGCAATGCTGGCAAATTTCCTTCACGGGTTGGGTTGGGCTGGTTGCGGAG
GCAGGATGCGAGATGAGATGCTGGATTAGCAGCACTGCTGACGATGTTGA
GTCCACATATGAAAGAAACAAAACATACAACATGATGAAA
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Coding sequence (CDS) from alignment at scaffold_15:280039..281928-

>mRNA_6297 ID=mRNA_6297|Name=jgi.p|Nanoce1779_2|543791|organism=Nannochloropsis oceanica|type=CDS|length=1275bp|location=Sequence derived from alignment at scaffold_15:280039..281928- (Nannochloropsis oceanica)
ATGCTCCGTCTCCTCCCAAACAGGCCCCTGTGCCGTGGCTTTGCGGTCGC
TGCCGCCCAGAAGAAGAAGACCATCGCAGATCTCAGCAAGGAGGTGTCGC
TTAAGGGGAAGAATGTCTTTGTCCGCGCCGATCTGAACGTGCCTGTTAAG
GGCGGCGCTGTGAAGGACAAGACCCGCATCAACCTCTCGGCGCCCACCAT
TCGATACCTTCTCGACCAAGGCGCTAAGGTGGTGGTCAGCAGTCACTTGG
GACGACCGAAGGGGCAAGTGATGGAGGATAAGCGTTTGACACCTGTTGCT
GCGGTGCTGGAGGCGGCCATAAGGGCCCCTGTCCGCTTGGCGCCGGACTC
GGCCGGGCCCGAGGCAGCTGCCTTTGTCAAGAACACTTCAGCTGGAGAGG
TAGTGCTCCTAGAAAACACTCGTTTCCACGCGGGGGAGACGAAGAACGAC
GAGGCATATGCGAAGCAATTGCACGAGGTATCCGGCGCTGATATTTACGT
AAATGACGCGTTTGGGGCGGCGCATCGGGCGCACGCGTCCACGCATGGGA
TCACGAAGTTTGTGTCTCACAAGGTGGCAGGATTACTGCTTGACAAGGAG
TTGACGGCCTTGGGCACGATCATGACGAGCCCAGAGCACCCGGTGGTGGC
GTGCATTGGGGGGTCGAAGGTATCGACGAAGCTGCCGGTGCTGGAGAGCT
TGCTTGCCAAGTGCGACACGATTCTGATTGGTGGGGGGATGATGTTTACG
TTTTCCAAAGCCCAGGGATATCACATCGGACGGAGTTTGGTGGAGGAGGA
TTTGGTGCCGATGGCGAAAGAGTTTCTGGCTAAGGCCAAGGCGAAGGGTG
TGAAGGTGGTGTTGCCGCGTGATTTTGTGGTGGCCCCGGACCTGGAGGAG
GCGAGCAGTAGCAAAGCGCTGCATGCGGATGTGGCGAGCTACAAGGGGGA
TGGGATAGGAGTGGATATCGGGCCGTTGACGGTGGGCGACTTCCATAATG
AGATCAAGGACGCCAAGACGTTCTTTTGGAATGGCCCGATGGGAGTTATC
GAGGTGCCACGTTACGCGCTGGGCACGGATGCCGTGACAAGGATGGCGGC
TTTCTTGAGCCAAAAAGGAGGTTTGGCGGTGGTGGGAGGAGGGGACTCTC
TGGTGACGGTGCAGAAGTTGGGCTTGTTTGACAAGATCACGCATGTTTCC
ACGGGCGGCGGGGCCATGTTGGAGTTCGTGGAGGGCAAGGTGCTGCCAGG
AGTGGAGGTGTTGGACAATAAGTAA
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Synonyms
Publications