jgi.p|Nanoce1779_2|89492, mRNA_6296 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|89492
Unique Name	mRNA_6296
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2808
Alignment location	scaffold_15:276932..279739 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	89578
Track	FilteredModels2
ProteinId	89492

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:276932..279739 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|89492	gene_6296	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|89492	mRNA_6296-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6296	CDS_6296	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:276932..279739-
coding sequence from alignment at scaffold_15:276932..279739-

mRNA sequence

>mRNA_6296 ID=mRNA_6296|Name=jgi.p|Nanoce1779_2|89492|organism=Nannochloropsis oceanica|type=mRNA|length=2808bp
ACTCGCCTTCCCTGCATCTCTACATACATTACTCACGCAGAGTCAACAAA
TTACAAGCTAAACAGCAGCTGAAGACCTCCTGGCAAGCCCTCTGTCAGGC
CTCCCGGTAAATAGAATCAAGATGGCGGGGTTTGCGGCCCGTCTAAGGGC
GTCATCGACCTCCCCTCCAAGGCATCATCAGCCTCAAACCAAATCACCTG
CCCGCCGTCAAAGCGTCCCCTCTACCTCCGCCTCCACCTCCATCTCCCCG
AACCCCCGTCGCCGCCTCTTCTCCAGCAGTCACAATCTCACGGCGACCAA
CCCGACCTGCTGGTACCAAGACCCTCTGCCCCGCCTTCCCGAGTCTCTGT
TCGATATTGTCGCCTCCTACTTGCCACAACGTGACGTTCTCCGCTGCCGT
CTCACCGCCAAACACCACCATGCTGCTTTCCCAAAAACCCTCCGACGGCT
TGAGCTCTCGTTTCACCACGCTGGACGGGTAGACTGGCCCGTCTTTGGGG
CCTTAAAGAGCCTCCATATTGGGCTTGGCGGAAAGGGATTGGTGGGAACC
GGGGAGAAATACAGCCCGTTAGGAGCGCTCTTCCCCCCGACCCCTCCTGC
CCTTACAGGACCCTCGTTGGTGATAGTGCCTTCTCTTTTCCCGCATTTGA
AGGAACTGAATTTGATTGGGCTTATGTTGGGAGATGCACGCATGGCATCT
TTGTGGGCCGGGCTGGGAAGATTAGAACAATTGGAAATTTTAAATTTGGA
CGGTAACGAATTGACGGACCAAAGCCTAGTGGCCTTGGCGCAGGAGATAG
TAGGGGAGCACCCGCAGCAGGAGCAACAGCAGAAGAAGCAGCAGTTGTGT
GCCTTGTCCACGTCCTCGTATTCCTCCACCGCGCATCATGGCGGACCCGA
ACTCGTCTCCTCTTGTGGCTCCCCTGTTGGCACCCCTTTTCCTCGTCTGA
CCTCGCTCCAGCTCTCTAGCAACCAGCTTGGTGATGCCGGGGTGGCCTGG
CTCTTACGCGCCTTGGCCAAAGCTAGTGTGAGTTTACGTATTTTGGACCT
ATCGGATAACTGCCTTGGAGACGGGCTAGGGGAAGAAGAGGAGGAAGATG
GGAGAGAAGGAGGGAGGGAAGGAGGGCTGCGGGAGGTATGTCAGGCGTTG
GTCGAGACAGAGGCGGGAATGAGGTTGGAGGAGTTGTGGTTGTCGTACAA
TCAACTGACGGACGGGGGTTTGAATGGATTGAGCAGGAAGGTGATTGCGA
ATCGACGTTTACCGTGCTTGCAGCGGCTGGAGCTGGAGTCGAACCATGTT
GGGAACGACGGAGTGGGGAGCCTCGCTGCGGCTTTATTGGCTTCCTCCAC
CCTCCCTTCCTCCTCCTCCTCTTCCCCCCCCTCGATATCACGGTTGTCGA
CCGTGAATCTGTGCAAGAACTCTGTGGGTGACGCGGGCGCACAAGCCCTC
GCTTACTCCCTCGTGCATGCCTCATGCCCATCCCTTTCTCGTCTTGATTT
AAGTGGGAATTTGATCGCGACTGCTGGTGCTGTTGCGCTAGCGGTGGCAT
TGGCGTCGGAGCGGACGTCGTTGAAGGTGCTGAGCTTGGCGTGGAACGAC
TTGAGGGACGCGGGGATGGTGGCATTTGCAGAGGAGTTGAATGGGGGGAG
GAGGAGGAGGAGGAATGGAGGGAGGACGAGGAAGGACGAGGATACGAAGA
GTGTGGAGGAGGAAGTGGAGGAGGCAAAGATGGAAGAGGAGGAGGACGAG
GGGGGGGAAGACGAGGATCGACCTTGGCTGGAGCGGTTGGAGCTGAGCAA
TAACAGTATAGGGGATACAGGAGTGCAGGCTTTAGCTGCCGCTCTGCAGT
CCGCCCCCCCCCTTGCGAGGTTAGTGTCGATCGATTTGACAGGAAATGAC
TTTCACGAGCTGGGTATTGGGGCCCTTGCGGCGATTGCGGACGGTGGACG
GTATTGTCATCGCCGTGAGCAGCAGGAGCAGGAGCAGGAGCAGGAGCAGG
AGCAGGGAAAGGAGCAGTCGGTGGAGAGGGATAAAAGAGAGGGAAGAGGG
AGGAGAAAAGGAAGGGGAGGAGGGAATGAGCAGCAGCTGCTGGCGTTTCC
TGACGTGAGGGTATATGATGGCTTGTTGCTGGGGGACTTGCTTGGGTGGC
AACCCAGTTCATGGCCGATGAAGAGGGGCGAGGAAGGGAGGGAGGGAGGG
GTGGAGGGAGGCGCGACGAAAGCAGGTAGAACAGCAGCAGGAGATGGTGT
GGGGAAAGGAGGCGGGGATGCCCGGCAATTGCTCTTTCGTCGACGGCAAT
CCCAGCGCATGGCGCGGCGGGAGCAACAGGCACAGGAGCAGCAGGAACAA
CAGCTGTGGAGGCTGCAGCTGGGGTTGGGGGGGGTCTGGGGAGCGGCGTG
GGATGTGGTGTGTATGGCGTTCGGGGGTGGGGGAGGGATACGGGCATAAG
TATGAGAGCGTTATGTATTTAAAAAGAGAGAAAGAAGGAGGGATAAGCCA
AGACTTCCATGGAAAATGCATATATATATATATGGAAAGAGGGGGGTCGG
TCGATAGAGAGAGGAAAAGCCTGGGTTTGACCATGTGAAAACCTGGTGAA
CTAGCTTCCTTCTCTCCTTTTTGACGATATTCTAAGCTAGTTGCTACACA
TTTTAGAAAGCCAATGTGTAGTGTCCTTGTGTGTTGTGTGTATGCATGCG
TATGGGTGCGAGGCTCGAGAAAGAGTGGATTTGTTTTGTGAAAAGGGGAA
TTTTGGGGGCGGTTGACCTGCGACTTGAAATCGGAAGCACGGGATGTCAA
CCGCACGG

protein sequence of jgi.p|Nanoce1779_2|89492

>mRNA_6296-protein ID=mRNA_6296-protein|Name=jgi.p|Nanoce1779_2|89492|organism=Nannochloropsis oceanica|type=polypeptide|length=776bp
MAGFAARLRASSTSPPRHHQPQTKSPARRQSVPSTSASTSISPNPRRRLF
SSSHNLTATNPTCWYQDPLPRLPESLFDIVASYLPQRDVLRCRLTAKHHH
AAFPKTLRRLELSFHHAGRVDWPVFGALKSLHIGLGGKGLVGTGEKYSPL
GALFPPTPPALTGPSLVIVPSLFPHLKELNLIGLMLGDARMASLWAGLGR
LEQLEILNLDGNELTDQSLVALAQEIVGEHPQQEQQQKKQQLCALSTSSY
SSTAHHGGPELVSSCGSPVGTPFPRLTSLQLSSNQLGDAGVAWLLRALAK
ASVSLRILDLSDNCLGDGLGEEEEEDGREGGREGGLREVCQALVETEAGM
RLEELWLSYNQLTDGGLNGLSRKVIANRRLPCLQRLELESNHVGNDGVGS
LAAALLASSTLPSSSSSSPPSISRLSTVNLCKNSVGDAGAQALAYSLVHA
SCPSLSRLDLSGNLIATAGAVALAVALASERTSLKVLSLAWNDLRDAGMV
AFAEELNGGRRRRRNGGRTRKDEDTKSVEEEVEEAKMEEEEDEGGEDEDR
PWLERLELSNNSIGDTGVQALAAALQSAPPLARLVSIDLTGNDFHELGIG
ALAAIADGGRYCHRREQQEQEQEQEQEQGKEQSVERDKREGRGRRKGRGG
GNEQQLLAFPDVRVYDGLLLGDLLGWQPSSWPMKRGEEGREGGVEGGATK
AGRTAAGDGVGKGGGDARQLLFRRRQSQRMARREQQAQEQQEQQLWRLQL
GLGGVWGAAWDVVCMAFGGGGGIRA*

mRNA from alignment at scaffold_15:276932..279739-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6296 ID=mRNA_6296|Name=jgi.p|Nanoce1779_2|89492|organism=Nannochloropsis oceanica|type=mRNA|length=2808bp|location=Sequence derived from alignment at scaffold_15:276932..279739- (Nannochloropsis oceanica)
ACTCGCCTTCCCTGCATCTCTACATACATTACTCACGCAGAGTCAACAAA
TTACAAGCTAAACAGCAGCTGAAGACCTCCTGGCAAGCCCTCTGTCAGGC
CTCCCGGTAAATAGAATCAAGATGGCGGGGTTTGCGGCCCGTCTAAGGGC
GTCATCGACCTCCCCTCCAAGGCATCATCAGCCTCAAACCAAATCACCTG
CCCGCCGTCAAAGCGTCCCCTCTACCTCCGCCTCCACCTCCATCTCCCCG
AACCCCCGTCGCCGCCTCTTCTCCAGCAGTCACAATCTCACGGCGACCAA
CCCGACCTGCTGGTACCAAGACCCTCTGCCCCGCCTTCCCGAGTCTCTGT
TCGATATTGTCGCCTCCTACTTGCCACAACGTGACGTTCTCCGCTGCCGT
CTCACCGCCAAACACCACCATGCTGCTTTCCCAAAAACCCTCCGACGGCT
TGAGCTCTCGTTTCACCACGCTGGACGGGTAGACTGGCCCGTCTTTGGGG
CCTTAAAGAGCCTCCATATTGGGCTTGGCGGAAAGGGATTGGTGGGAACC
GGGGAGAAATACAGCCCGTTAGGAGCGCTCTTCCCCCCGACCCCTCCTGC
CCTTACAGGACCCTCGTTGGTGATAGTGCCTTCTCTTTTCCCGCATTTGA
AGGAACTGAATTTGATTGGGCTTATGTTGGGAGATGCACGCATGGCATCT
TTGTGGGCCGGGCTGGGAAGATTAGAACAATTGGAAATTTTAAATTTGGA
CGGTAACGAATTGACGGACCAAAGCCTAGTGGCCTTGGCGCAGGAGATAG
TAGGGGAGCACCCGCAGCAGGAGCAACAGCAGAAGAAGCAGCAGTTGTGT
GCCTTGTCCACGTCCTCGTATTCCTCCACCGCGCATCATGGCGGACCCGA
ACTCGTCTCCTCTTGTGGCTCCCCTGTTGGCACCCCTTTTCCTCGTCTGA
CCTCGCTCCAGCTCTCTAGCAACCAGCTTGGTGATGCCGGGGTGGCCTGG
CTCTTACGCGCCTTGGCCAAAGCTAGTGTGAGTTTACGTATTTTGGACCT
ATCGGATAACTGCCTTGGAGACGGGCTAGGGGAAGAAGAGGAGGAAGATG
GGAGAGAAGGAGGGAGGGAAGGAGGGCTGCGGGAGGTATGTCAGGCGTTG
GTCGAGACAGAGGCGGGAATGAGGTTGGAGGAGTTGTGGTTGTCGTACAA
TCAACTGACGGACGGGGGTTTGAATGGATTGAGCAGGAAGGTGATTGCGA
ATCGACGTTTACCGTGCTTGCAGCGGCTGGAGCTGGAGTCGAACCATGTT
GGGAACGACGGAGTGGGGAGCCTCGCTGCGGCTTTATTGGCTTCCTCCAC
CCTCCCTTCCTCCTCCTCCTCTTCCCCCCCCTCGATATCACGGTTGTCGA
CCGTGAATCTGTGCAAGAACTCTGTGGGTGACGCGGGCGCACAAGCCCTC
GCTTACTCCCTCGTGCATGCCTCATGCCCATCCCTTTCTCGTCTTGATTT
AAGTGGGAATTTGATCGCGACTGCTGGTGCTGTTGCGCTAGCGGTGGCAT
TGGCGTCGGAGCGGACGTCGTTGAAGGTGCTGAGCTTGGCGTGGAACGAC
TTGAGGGACGCGGGGATGGTGGCATTTGCAGAGGAGTTGAATGGGGGGAG
GAGGAGGAGGAGGAATGGAGGGAGGACGAGGAAGGACGAGGATACGAAGA
GTGTGGAGGAGGAAGTGGAGGAGGCAAAGATGGAAGAGGAGGAGGACGAG
GGGGGGGAAGACGAGGATCGACCTTGGCTGGAGCGGTTGGAGCTGAGCAA
TAACAGTATAGGGGATACAGGAGTGCAGGCTTTAGCTGCCGCTCTGCAGT
CCGCCCCCCCCCTTGCGAGGTTAGTGTCGATCGATTTGACAGGAAATGAC
TTTCACGAGCTGGGTATTGGGGCCCTTGCGGCGATTGCGGACGGTGGACG
GTATTGTCATCGCCGTGAGCAGCAGGAGCAGGAGCAGGAGCAGGAGCAGG
AGCAGGGAAAGGAGCAGTCGGTGGAGAGGGATAAAAGAGAGGGAAGAGGG
AGGAGAAAAGGAAGGGGAGGAGGGAATGAGCAGCAGCTGCTGGCGTTTCC
TGACGTGAGGGTATATGATGGCTTGTTGCTGGGGGACTTGCTTGGGTGGC
AACCCAGTTCATGGCCGATGAAGAGGGGCGAGGAAGGGAGGGAGGGAGGG
GTGGAGGGAGGCGCGACGAAAGCAGGTAGAACAGCAGCAGGAGATGGTGT
GGGGAAAGGAGGCGGGGATGCCCGGCAATTGCTCTTTCGTCGACGGCAAT
CCCAGCGCATGGCGCGGCGGGAGCAACAGGCACAGGAGCAGCAGGAACAA
CAGCTGTGGAGGCTGCAGCTGGGGTTGGGGGGGGTCTGGGGAGCGGCGTG
GGATGTGGTGTGTATGGCGTTCGGGGGTGGGGGAGGGATACGGGCATAAG
TATGAGAGCGTTATGTATTTAAAAAGAGAGAAAGAAGGAGGGATAAGCCA
AGACTTCCATGGAAAATGCATATATATATATATGGAAAGAGGGGGGTCGG
TCGATAGAGAGAGGAAAAGCCTGGGTTTGACCATGTGAAAACCTGGTGAA
CTAGCTTCCTTCTCTCCTTTTTGACGATATTCTAAGCTAGTTGCTACACA
TTTTAGAAAGCCAATGTGTAGTGTCCTTGTGTGTTGTGTGTATGCATGCG
TATGGGTGCGAGGCTCGAGAAAGAGTGGATTTGTTTTGTGAAAAGGGGAA
TTTTGGGGGCGGTTGACCTGCGACTTGAAATCGGAAGCACGGGATGTCAA
CCGCACGG

Coding sequence (CDS) from alignment at scaffold_15:276932..279739-

>mRNA_6296 ID=mRNA_6296|Name=jgi.p|Nanoce1779_2|89492|organism=Nannochloropsis oceanica|type=CDS|length=2328bp|location=Sequence derived from alignment at scaffold_15:276932..279739- (Nannochloropsis oceanica)
ATGGCGGGGTTTGCGGCCCGTCTAAGGGCGTCATCGACCTCCCCTCCAAG
GCATCATCAGCCTCAAACCAAATCACCTGCCCGCCGTCAAAGCGTCCCCT
CTACCTCCGCCTCCACCTCCATCTCCCCGAACCCCCGTCGCCGCCTCTTC
TCCAGCAGTCACAATCTCACGGCGACCAACCCGACCTGCTGGTACCAAGA
CCCTCTGCCCCGCCTTCCCGAGTCTCTGTTCGATATTGTCGCCTCCTACT
TGCCACAACGTGACGTTCTCCGCTGCCGTCTCACCGCCAAACACCACCAT
GCTGCTTTCCCAAAAACCCTCCGACGGCTTGAGCTCTCGTTTCACCACGC
TGGACGGGTAGACTGGCCCGTCTTTGGGGCCTTAAAGAGCCTCCATATTG
GGCTTGGCGGAAAGGGATTGGTGGGAACCGGGGAGAAATACAGCCCGTTA
GGAGCGCTCTTCCCCCCGACCCCTCCTGCCCTTACAGGACCCTCGTTGGT
GATAGTGCCTTCTCTTTTCCCGCATTTGAAGGAACTGAATTTGATTGGGC
TTATGTTGGGAGATGCACGCATGGCATCTTTGTGGGCCGGGCTGGGAAGA
TTAGAACAATTGGAAATTTTAAATTTGGACGGTAACGAATTGACGGACCA
AAGCCTAGTGGCCTTGGCGCAGGAGATAGTAGGGGAGCACCCGCAGCAGG
AGCAACAGCAGAAGAAGCAGCAGTTGTGTGCCTTGTCCACGTCCTCGTAT
TCCTCCACCGCGCATCATGGCGGACCCGAACTCGTCTCCTCTTGTGGCTC
CCCTGTTGGCACCCCTTTTCCTCGTCTGACCTCGCTCCAGCTCTCTAGCA
ACCAGCTTGGTGATGCCGGGGTGGCCTGGCTCTTACGCGCCTTGGCCAAA
GCTAGTGTGAGTTTACGTATTTTGGACCTATCGGATAACTGCCTTGGAGA
CGGGCTAGGGGAAGAAGAGGAGGAAGATGGGAGAGAAGGAGGGAGGGAAG
GAGGGCTGCGGGAGGTATGTCAGGCGTTGGTCGAGACAGAGGCGGGAATG
AGGTTGGAGGAGTTGTGGTTGTCGTACAATCAACTGACGGACGGGGGTTT
GAATGGATTGAGCAGGAAGGTGATTGCGAATCGACGTTTACCGTGCTTGC
AGCGGCTGGAGCTGGAGTCGAACCATGTTGGGAACGACGGAGTGGGGAGC
CTCGCTGCGGCTTTATTGGCTTCCTCCACCCTCCCTTCCTCCTCCTCCTC
TTCCCCCCCCTCGATATCACGGTTGTCGACCGTGAATCTGTGCAAGAACT
CTGTGGGTGACGCGGGCGCACAAGCCCTCGCTTACTCCCTCGTGCATGCC
TCATGCCCATCCCTTTCTCGTCTTGATTTAAGTGGGAATTTGATCGCGAC
TGCTGGTGCTGTTGCGCTAGCGGTGGCATTGGCGTCGGAGCGGACGTCGT
TGAAGGTGCTGAGCTTGGCGTGGAACGACTTGAGGGACGCGGGGATGGTG
GCATTTGCAGAGGAGTTGAATGGGGGGAGGAGGAGGAGGAGGAATGGAGG
GAGGACGAGGAAGGACGAGGATACGAAGAGTGTGGAGGAGGAAGTGGAGG
AGGCAAAGATGGAAGAGGAGGAGGACGAGGGGGGGGAAGACGAGGATCGA
CCTTGGCTGGAGCGGTTGGAGCTGAGCAATAACAGTATAGGGGATACAGG
AGTGCAGGCTTTAGCTGCCGCTCTGCAGTCCGCCCCCCCCCTTGCGAGGT
TAGTGTCGATCGATTTGACAGGAAATGACTTTCACGAGCTGGGTATTGGG
GCCCTTGCGGCGATTGCGGACGGTGGACGGTATTGTCATCGCCGTGAGCA
GCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGGAAAGGAGCAGTCGG
TGGAGAGGGATAAAAGAGAGGGAAGAGGGAGGAGAAAAGGAAGGGGAGGA
GGGAATGAGCAGCAGCTGCTGGCGTTTCCTGACGTGAGGGTATATGATGG
CTTGTTGCTGGGGGACTTGCTTGGGTGGCAACCCAGTTCATGGCCGATGA
AGAGGGGCGAGGAAGGGAGGGAGGGAGGGGTGGAGGGAGGCGCGACGAAA
GCAGGTAGAACAGCAGCAGGAGATGGTGTGGGGAAAGGAGGCGGGGATGC
CCGGCAATTGCTCTTTCGTCGACGGCAATCCCAGCGCATGGCGCGGCGGG
AGCAACAGGCACAGGAGCAGCAGGAACAACAGCTGTGGAGGCTGCAGCTG
GGGTTGGGGGGGGTCTGGGGAGCGGCGTGGGATGTGGTGTGTATGGCGTT
CGGGGGTGGGGGAGGGATACGGGCATAA

Synonyms

Publications