jgi.p|Nanoce1779_2|594494, mRNA_6294 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594494
Unique NamemRNA_6294
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1551
Alignment locationscaffold_15:273692..275242 -

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Properties
Property NameValue
TranscriptId594580
TrackFilteredModels2
ProteinId594494
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:273692..275242 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594494gene_6294Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594494mRNA_6294-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6294CDS_6294Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6294 ID=mRNA_6294|Name=jgi.p|Nanoce1779_2|594494|organism=Nannochloropsis oceanica|type=mRNA|length=1551bp
ACAGTCGCCATGTACTCGGGTGCGGTCGTGTATGGGGCCAAAAACCAATC
TCGGTGTCTAGCGGCCGTGTGCGGGGATCACGAGGAGGGTCATCGCTTCC
TTGTCGGAGCTGCGGGCCTGCGTGAGCAACCCCACAATGAACTTTTGCTG
CTCGAGTACTTCGAAGACACCAACAATGTAAAAGAAGCATGCACTTACCG
TCATCCAGGAGAGATCTGGCACATCAGTCCATCCCCACGCGATGCCGCCT
TGTGTTTCACCAGCTCGACGCGCAAGGGCACCGATCCCGCCTGCACCTTG
TGGCGTCTCCCGTTGCCTTCGTCCTCCGCGTTCTCCCCATCCAGCTCACC
CACAGAAGAAGGAGATCAATCAGCATCACAGTCATCCGTGCATCGCTCCC
CAGATCACCAGGCCTTTGCGACATCGACGTTTTTTCCAGGTGGAGGAGGA
GGGATAAGAGGAGATAGCGGCAAGACCCACAACAATCACCAGCAGCATAA
CCAGAGCACTCCTATGGAAGCGATAATAAGTCTACCGACGATAACGACGA
CGAGCAGCAGTGGAGGAGGACGGGTTCGGTGTGTGTTGTGGAGTTTAGGG
GAGGAGGCGGGGGCACAGGAGCAAGTGCTAGCTGTGGACGAAGGGAAAGC
AACATTATATTCACTCAGTACCAGCAGCACCAGCAGTGATAACAGTGCGC
AGGAGATCAGTAGCTTTATCTTGGGTGGACCCGAGAAAGGGGAGGTCCAA
ACGGCAGCATGGGACCCCCATAACCTGTATAAGGTCGCGACAGTACAAGG
CACGAGTGTCACACACTGGGACCTGCGCACAGGGAAACCGTCTGGCCAAG
CCTCGTCATCCCTCCCTCAGATCGCGGAGCTCGCCCACAGGCACGGTGCT
CGTGACGTGGACTTTAATCGATCGAAGCCTTACTATTTTGTGACGGGGGG
GGAGGATCGTTTGGTGAAATTTTGGGATTCGCGGAAAATGACCCACGGGC
CTGTGAAGCAGCTGGCGGGGCACACGCACTGGGTGACAACCGTTAAATAC
AATCCGTGCCACGACCAACTGCTCTTAAGTGGGGGGACGGACAGCATGGT
TAATTTGTGGAGGGTGTCTTCGATTAGCTCGGCTCCGTTGTTGGACTTGG
AGGATGGTCATGATGCCCCCGACCTCCGGGTGAAGAAGTTCGAGGACCAT
GAGGAGAGTGTGTACAGCGTGGCGTGGTCGAGTCAAGACCCCTTTGTCTT
CTCGAGCCTGTCATACGATGGTCGGGTGGCTATCAATGCAGTGCCGCCCT
CGGAGAAGTACAAAATCTTGCTGTAGTGGACTGGAGGACGGAGGTCGAGG
AAGGGGAGAAGGAGTGGGTCGGGTCCTCGAGGAGAGAAGAGAATCTTATT
TATTTCAAAATGCTGCTGACATGTAATTGATACGGAAACGCTGTCGATGG
ATAAAAATAATGAATAAATAACAAGATTTAAAAGCCGCCGCCGAAGTTTT
ACACACAAAATAAGAAGAAAGAAAAACAGAGGTGGGGGAAGGAAGGAGGC
A
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protein sequence of jgi.p|Nanoce1779_2|594494

>mRNA_6294-protein ID=mRNA_6294-protein|Name=jgi.p|Nanoce1779_2|594494|organism=Nannochloropsis oceanica|type=polypeptide|length=439bp
MYSGAVVYGAKNQSRCLAAVCGDHEEGHRFLVGAAGLREQPHNELLLLEY
FEDTNNVKEACTYRHPGEIWHISPSPRDAALCFTSSTRKGTDPACTLWRL
PLPSSSAFSPSSSPTEEGDQSASQSSVHRSPDHQAFATSTFFPGGGGGIR
GDSGKTHNNHQQHNQSTPMEAIISLPTITTTSSSGGGRVRCVLWSLGEEA
GAQEQVLAVDEGKATLYSLSTSSTSSDNSAQEISSFILGGPEKGEVQTAA
WDPHNLYKVATVQGTSVTHWDLRTGKPSGQASSSLPQIAELAHRHGARDV
DFNRSKPYYFVTGGEDRLVKFWDSRKMTHGPVKQLAGHTHWVTTVKYNPC
HDQLLLSGGTDSMVNLWRVSSISSAPLLDLEDGHDAPDLRVKKFEDHEES
VYSVAWSSQDPFVFSSLSYDGRVAINAVPPSEKYKILL*
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mRNA from alignment at scaffold_15:273692..275242-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6294 ID=mRNA_6294|Name=jgi.p|Nanoce1779_2|594494|organism=Nannochloropsis oceanica|type=mRNA|length=1551bp|location=Sequence derived from alignment at scaffold_15:273692..275242- (Nannochloropsis oceanica)
ACAGTCGCCATGTACTCGGGTGCGGTCGTGTATGGGGCCAAAAACCAATC
TCGGTGTCTAGCGGCCGTGTGCGGGGATCACGAGGAGGGTCATCGCTTCC
TTGTCGGAGCTGCGGGCCTGCGTGAGCAACCCCACAATGAACTTTTGCTG
CTCGAGTACTTCGAAGACACCAACAATGTAAAAGAAGCATGCACTTACCG
TCATCCAGGAGAGATCTGGCACATCAGTCCATCCCCACGCGATGCCGCCT
TGTGTTTCACCAGCTCGACGCGCAAGGGCACCGATCCCGCCTGCACCTTG
TGGCGTCTCCCGTTGCCTTCGTCCTCCGCGTTCTCCCCATCCAGCTCACC
CACAGAAGAAGGAGATCAATCAGCATCACAGTCATCCGTGCATCGCTCCC
CAGATCACCAGGCCTTTGCGACATCGACGTTTTTTCCAGGTGGAGGAGGA
GGGATAAGAGGAGATAGCGGCAAGACCCACAACAATCACCAGCAGCATAA
CCAGAGCACTCCTATGGAAGCGATAATAAGTCTACCGACGATAACGACGA
CGAGCAGCAGTGGAGGAGGACGGGTTCGGTGTGTGTTGTGGAGTTTAGGG
GAGGAGGCGGGGGCACAGGAGCAAGTGCTAGCTGTGGACGAAGGGAAAGC
AACATTATATTCACTCAGTACCAGCAGCACCAGCAGTGATAACAGTGCGC
AGGAGATCAGTAGCTTTATCTTGGGTGGACCCGAGAAAGGGGAGGTCCAA
ACGGCAGCATGGGACCCCCATAACCTGTATAAGGTCGCGACAGTACAAGG
CACGAGTGTCACACACTGGGACCTGCGCACAGGGAAACCGTCTGGCCAAG
CCTCGTCATCCCTCCCTCAGATCGCGGAGCTCGCCCACAGGCACGGTGCT
CGTGACGTGGACTTTAATCGATCGAAGCCTTACTATTTTGTGACGGGGGG
GGAGGATCGTTTGGTGAAATTTTGGGATTCGCGGAAAATGACCCACGGGC
CTGTGAAGCAGCTGGCGGGGCACACGCACTGGGTGACAACCGTTAAATAC
AATCCGTGCCACGACCAACTGCTCTTAAGTGGGGGGACGGACAGCATGGT
TAATTTGTGGAGGGTGTCTTCGATTAGCTCGGCTCCGTTGTTGGACTTGG
AGGATGGTCATGATGCCCCCGACCTCCGGGTGAAGAAGTTCGAGGACCAT
GAGGAGAGTGTGTACAGCGTGGCGTGGTCGAGTCAAGACCCCTTTGTCTT
CTCGAGCCTGTCATACGATGGTCGGGTGGCTATCAATGCAGTGCCGCCCT
CGGAGAAGTACAAAATCTTGCTGTAGTGGACTGGAGGACGGAGGTCGAGG
AAGGGGAGAAGGAGTGGGTCGGGTCCTCGAGGAGAGAAGAGAATCTTATT
TATTTCAAAATGCTGCTGACATGTAATTGATACGGAAACGCTGTCGATGG
ATAAAAATAATGAATAAATAACAAGATTTAAAAGCCGCCGCCGAAGTTTT
ACACACAAAATAAGAAGAAAGAAAAACAGAGGTGGGGGAAGGAAGGAGGC
A
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Coding sequence (CDS) from alignment at scaffold_15:273692..275242-

>mRNA_6294 ID=mRNA_6294|Name=jgi.p|Nanoce1779_2|594494|organism=Nannochloropsis oceanica|type=CDS|length=1317bp|location=Sequence derived from alignment at scaffold_15:273692..275242- (Nannochloropsis oceanica)
ATGTACTCGGGTGCGGTCGTGTATGGGGCCAAAAACCAATCTCGGTGTCT
AGCGGCCGTGTGCGGGGATCACGAGGAGGGTCATCGCTTCCTTGTCGGAG
CTGCGGGCCTGCGTGAGCAACCCCACAATGAACTTTTGCTGCTCGAGTAC
TTCGAAGACACCAACAATGTAAAAGAAGCATGCACTTACCGTCATCCAGG
AGAGATCTGGCACATCAGTCCATCCCCACGCGATGCCGCCTTGTGTTTCA
CCAGCTCGACGCGCAAGGGCACCGATCCCGCCTGCACCTTGTGGCGTCTC
CCGTTGCCTTCGTCCTCCGCGTTCTCCCCATCCAGCTCACCCACAGAAGA
AGGAGATCAATCAGCATCACAGTCATCCGTGCATCGCTCCCCAGATCACC
AGGCCTTTGCGACATCGACGTTTTTTCCAGGTGGAGGAGGAGGGATAAGA
GGAGATAGCGGCAAGACCCACAACAATCACCAGCAGCATAACCAGAGCAC
TCCTATGGAAGCGATAATAAGTCTACCGACGATAACGACGACGAGCAGCA
GTGGAGGAGGACGGGTTCGGTGTGTGTTGTGGAGTTTAGGGGAGGAGGCG
GGGGCACAGGAGCAAGTGCTAGCTGTGGACGAAGGGAAAGCAACATTATA
TTCACTCAGTACCAGCAGCACCAGCAGTGATAACAGTGCGCAGGAGATCA
GTAGCTTTATCTTGGGTGGACCCGAGAAAGGGGAGGTCCAAACGGCAGCA
TGGGACCCCCATAACCTGTATAAGGTCGCGACAGTACAAGGCACGAGTGT
CACACACTGGGACCTGCGCACAGGGAAACCGTCTGGCCAAGCCTCGTCAT
CCCTCCCTCAGATCGCGGAGCTCGCCCACAGGCACGGTGCTCGTGACGTG
GACTTTAATCGATCGAAGCCTTACTATTTTGTGACGGGGGGGGAGGATCG
TTTGGTGAAATTTTGGGATTCGCGGAAAATGACCCACGGGCCTGTGAAGC
AGCTGGCGGGGCACACGCACTGGGTGACAACCGTTAAATACAATCCGTGC
CACGACCAACTGCTCTTAAGTGGGGGGACGGACAGCATGGTTAATTTGTG
GAGGGTGTCTTCGATTAGCTCGGCTCCGTTGTTGGACTTGGAGGATGGTC
ATGATGCCCCCGACCTCCGGGTGAAGAAGTTCGAGGACCATGAGGAGAGT
GTGTACAGCGTGGCGTGGTCGAGTCAAGACCCCTTTGTCTTCTCGAGCCT
GTCATACGATGGTCGGGTGGCTATCAATGCAGTGCCGCCCTCGGAGAAGT
ACAAAATCTTGCTGTAG
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Synonyms
Publications