jgi.p|Nanoce1779_2|594492, mRNA_6293 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594492
Unique NamemRNA_6293
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1193
Alignment locationscaffold_15:272398..273590 +

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Properties
Property NameValue
TranscriptId594578
TrackFilteredModels2
ProteinId594492
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:272398..273590 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594492gene_6293Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594492mRNA_6293-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6293CDS_6293Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6293 ID=mRNA_6293|Name=jgi.p|Nanoce1779_2|594492|organism=Nannochloropsis oceanica|type=mRNA|length=1193bp
ACAGAAAAACCAGGGCCGCCGCGACAACCCACTTTCTTCCACAGCAGCGC
CGCCGCAGCGTCAGACTTCTATTTCACCACGCCCAGCAGCACCACACGAC
GTCACCGCCTCTGCACAACCATGTTCTCGTTTTCAAGGAGTACGCCTCTT
CTCCTGGCGCTGGCCATGCTAAGCCTGGCCTGCTGCTGCTGCGTCGTTCA
TGCATTCATGCCTCATTCTACTTCGACACTCTTCGCCCCCTCCTCCATGT
CCAAGCTCCCTACGGCTACCACAACTCGCAGCAGCCGCACGCGCACCCAC
GCCGTGCAGATGAATTTGGCCGATCGGTTTTTCCGTGTTGTCAAGGCCAA
CATTAATTCAGTCATCCAAAATTTAGAGGACCCTGAAAAGATCCTGGAGC
AAGCAGTCGAAGACATGCAACGGGACTTGATCAAAATTAGGCAATCTTAC
GCCGAGGTGTCCGCGACGCAAAAGCGCATGGAACGCCAGAAGGAACAAGC
GGATAATCTGTCGAATGAATGGTACAAACGTGCACAGCTTGCGCTGAGCA
AAGGGGATGAGGAGCTGGCCCGCGAGGCGTTAGGAAGGAGGCAGCAACAG
GTGGAGGTTGCCACGTCGCTGGGTGAGCAAATGGCAGTGCAAGGCTCGGC
GATTGATAAATTGTTCATGTCCATGCAGCAGCTCGAAGCAAAAATCACCG
AGGCCAAGGCGAAGAAGGACCAGATGATTGCAAGGGCTCGAACAGCCAAG
ACGAGTCAAAAAGTGAATGACATGCTGTCGTCAGTAACAGGCTCAACGAG
CATGGACGCCTTTGACCGTATGAACGAAAAGGTTGAGATGCTTGAAAGCA
AAGCTGAGATCGCCGGTCAGCTTGCCGGTGTGTCTGACAGCTCTTTAGAA
GGGAAGTTTAAGCTGTTGGGAGACGGGGATGCGTTGGACGAGGAGTTGAA
GAAAATGAAAGGTATGCTGGGACAGGGGGAGAAGAAGGCGGCTGGCTTCT
TACCCGCCGGGGAGGCAGCCGCAGAGGTGGATTTAGAGTTGGAGGCGCTG
AGAAAAGACATGGGGAAATAGGGGGAGGAAAGGAGGGAGGGAGGAAGGGA
AGGAGGGAGAGTGTTTTTGAATAGTTTGGAGGGTTCTTTTTCGGTGGTAG
GAAATTGATATATGGAGAGCAAGGCAGAGAACAGGGTGTGAAG
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protein sequence of jgi.p|Nanoce1779_2|594492

>mRNA_6293-protein ID=mRNA_6293-protein|Name=jgi.p|Nanoce1779_2|594492|organism=Nannochloropsis oceanica|type=polypeptide|length=317bp
MFSFSRSTPLLLALAMLSLACCCCVVHAFMPHSTSTLFAPSSMSKLPTAT
TTRSSRTRTHAVQMNLADRFFRVVKANINSVIQNLEDPEKILEQAVEDMQ
RDLIKIRQSYAEVSATQKRMERQKEQADNLSNEWYKRAQLALSKGDEELA
REALGRRQQQVEVATSLGEQMAVQGSAIDKLFMSMQQLEAKITEAKAKKD
QMIARARTAKTSQKVNDMLSSVTGSTSMDAFDRMNEKVEMLESKAEIAGQ
LAGVSDSSLEGKFKLLGDGDALDEELKKMKGMLGQGEKKAAGFLPAGEAA
AEVDLELEALRKDMGK*
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mRNA from alignment at scaffold_15:272398..273590+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6293 ID=mRNA_6293|Name=jgi.p|Nanoce1779_2|594492|organism=Nannochloropsis oceanica|type=mRNA|length=1193bp|location=Sequence derived from alignment at scaffold_15:272398..273590+ (Nannochloropsis oceanica)
ACAGAAAAACCAGGGCCGCCGCGACAACCCACTTTCTTCCACAGCAGCGC
CGCCGCAGCGTCAGACTTCTATTTCACCACGCCCAGCAGCACCACACGAC
GTCACCGCCTCTGCACAACCATGTTCTCGTTTTCAAGGAGTACGCCTCTT
CTCCTGGCGCTGGCCATGCTAAGCCTGGCCTGCTGCTGCTGCGTCGTTCA
TGCATTCATGCCTCATTCTACTTCGACACTCTTCGCCCCCTCCTCCATGT
CCAAGCTCCCTACGGCTACCACAACTCGCAGCAGCCGCACGCGCACCCAC
GCCGTGCAGATGAATTTGGCCGATCGGTTTTTCCGTGTTGTCAAGGCCAA
CATTAATTCAGTCATCCAAAATTTAGAGGACCCTGAAAAGATCCTGGAGC
AAGCAGTCGAAGACATGCAACGGGACTTGATCAAAATTAGGCAATCTTAC
GCCGAGGTGTCCGCGACGCAAAAGCGCATGGAACGCCAGAAGGAACAAGC
GGATAATCTGTCGAATGAATGGTACAAACGTGCACAGCTTGCGCTGAGCA
AAGGGGATGAGGAGCTGGCCCGCGAGGCGTTAGGAAGGAGGCAGCAACAG
GTGGAGGTTGCCACGTCGCTGGGTGAGCAAATGGCAGTGCAAGGCTCGGC
GATTGATAAATTGTTCATGTCCATGCAGCAGCTCGAAGCAAAAATCACCG
AGGCCAAGGCGAAGAAGGACCAGATGATTGCAAGGGCTCGAACAGCCAAG
ACGAGTCAAAAAGTGAATGACATGCTGTCGTCAGTAACAGGCTCAACGAG
CATGGACGCCTTTGACCGTATGAACGAAAAGGTTGAGATGCTTGAAAGCA
AAGCTGAGATCGCCGGTCAGCTTGCCGGTGTGTCTGACAGCTCTTTAGAA
GGGAAGTTTAAGCTGTTGGGAGACGGGGATGCGTTGGACGAGGAGTTGAA
GAAAATGAAAGGTATGCTGGGACAGGGGGAGAAGAAGGCGGCTGGCTTCT
TACCCGCCGGGGAGGCAGCCGCAGAGGTGGATTTAGAGTTGGAGGCGCTG
AGAAAAGACATGGGGAAATAGGGGGAGGAAAGGAGGGAGGGAGGAAGGGA
AGGAGGGAGAGTGTTTTTGAATAGTTTGGAGGGTTCTTTTTCGGTGGTAG
GAAATTGATATATGGAGAGCAAGGCAGAGAACAGGGTGTGAAG
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Coding sequence (CDS) from alignment at scaffold_15:272398..273590+

>mRNA_6293 ID=mRNA_6293|Name=jgi.p|Nanoce1779_2|594492|organism=Nannochloropsis oceanica|type=CDS|length=951bp|location=Sequence derived from alignment at scaffold_15:272398..273590+ (Nannochloropsis oceanica)
ATGTTCTCGTTTTCAAGGAGTACGCCTCTTCTCCTGGCGCTGGCCATGCT
AAGCCTGGCCTGCTGCTGCTGCGTCGTTCATGCATTCATGCCTCATTCTA
CTTCGACACTCTTCGCCCCCTCCTCCATGTCCAAGCTCCCTACGGCTACC
ACAACTCGCAGCAGCCGCACGCGCACCCACGCCGTGCAGATGAATTTGGC
CGATCGGTTTTTCCGTGTTGTCAAGGCCAACATTAATTCAGTCATCCAAA
ATTTAGAGGACCCTGAAAAGATCCTGGAGCAAGCAGTCGAAGACATGCAA
CGGGACTTGATCAAAATTAGGCAATCTTACGCCGAGGTGTCCGCGACGCA
AAAGCGCATGGAACGCCAGAAGGAACAAGCGGATAATCTGTCGAATGAAT
GGTACAAACGTGCACAGCTTGCGCTGAGCAAAGGGGATGAGGAGCTGGCC
CGCGAGGCGTTAGGAAGGAGGCAGCAACAGGTGGAGGTTGCCACGTCGCT
GGGTGAGCAAATGGCAGTGCAAGGCTCGGCGATTGATAAATTGTTCATGT
CCATGCAGCAGCTCGAAGCAAAAATCACCGAGGCCAAGGCGAAGAAGGAC
CAGATGATTGCAAGGGCTCGAACAGCCAAGACGAGTCAAAAAGTGAATGA
CATGCTGTCGTCAGTAACAGGCTCAACGAGCATGGACGCCTTTGACCGTA
TGAACGAAAAGGTTGAGATGCTTGAAAGCAAAGCTGAGATCGCCGGTCAG
CTTGCCGGTGTGTCTGACAGCTCTTTAGAAGGGAAGTTTAAGCTGTTGGG
AGACGGGGATGCGTTGGACGAGGAGTTGAAGAAAATGAAAGGTATGCTGG
GACAGGGGGAGAAGAAGGCGGCTGGCTTCTTACCCGCCGGGGAGGCAGCC
GCAGAGGTGGATTTAGAGTTGGAGGCGCTGAGAAAAGACATGGGGAAATA
G
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Synonyms
Publications