jgi.p|Nanoce1779_2|89478, mRNA_6292 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|89478
Unique NamemRNA_6292
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length504
Alignment locationscaffold_15:271218..271960 -

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Properties
Property NameValue
TranscriptId89564
TrackFilteredModels2
ProteinId89478
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:271218..271960 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|89478gene_6292Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|89478mRNA_6292-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6292CDS_6292Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6292 ID=mRNA_6292|Name=jgi.p|Nanoce1779_2|89478|organism=Nannochloropsis oceanica|type=mRNA|length=504bp
CCACGCCATATAATTCGCACATCCACATTCACAGGAAATTGTGTCGCCCA
CGTGCGCAGCTCCCATAGTTTGTATTTCTGGTTACGGAGTCGCACGATGG
ACGACCCCTACCTCTCCTCCTCGACCTGTTCCTGGCATCCGCCGGACGAC
GGCAGCACGTCCCCCGCCATGGGACCCTTGGGAATTGATTACATCTACGC
CTATCACTGCGGATTCAAGGAGCATGGCTGGTTATTTTTCCCATGTTTGT
TGGCTTGGGGGTCGTTCATTACGTACTTGATGGGGCACACGGCTGATGCT
TATTTCTCGCCGACGCTGGCCACGCTATCGGACAAGGGATATGCGAGCTG
CTGGGAGCTTCCGTGTTCGTGACGACAGTTGTAGTTGGCGCCGTGGCCTT
GCTGCACCCGGCGTCGGTGCGTCCCCAGGCCTTTGCTCGGGATATTTTTT
TTCAAGTCCTGGCCAATCTGCTGCTGACGGCATCAGCTATCTATGGAAGG
GTGA
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protein sequence of jgi.p|Nanoce1779_2|89478

>mRNA_6292-protein ID=mRNA_6292-protein|Name=jgi.p|Nanoce1779_2|89478|organism=Nannochloropsis oceanica|type=polypeptide|length=92bp
MDDPYLSSSTCSWHPPDDGSTSPAMGPLGIDYIYAYHCGFKEHGWLFFPC
LLAWGSFITYLMGHTADAYFSPTLATLSDKGYASCWELPCS*
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mRNA from alignment at scaffold_15:271218..271960-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6292 ID=mRNA_6292|Name=jgi.p|Nanoce1779_2|89478|organism=Nannochloropsis oceanica|type=mRNA|length=743bp|location=Sequence derived from alignment at scaffold_15:271218..271960- (Nannochloropsis oceanica)
CCACGCCATATAATTCGCACATCCACATTCACAGGAAATTGTGTCGCCCA
CGTGCGCAGCTCCCATAGTTTGTATTTCTGGTTACGGAGTCGCACGATGG
ACGACCCCTACCTCTCCTCCTCGACCTGTTCCTGGCATCCGCCGGACGAC
GGCAGCACGTCCCCCGCCATGGGACCCTTGGGAATTGATTACATCTACGC
CTATCACTGCGGATTCAAGGAGCATGGCTGGTTATTTTTCCCATGTTTGT
TGGCTTGGGGGTCGTTCATTACGTACTTGATGGGGCACACGGCTGATGCT
TATTTCTCGCCGACGCTGGCCACGCTATCGGACAAGGTACGACAAGGGAG
GAAATGGGGGAGCAGAAGCGGATGTTTTCATCATTCGCACTCTGGAATTG
TGAGTTTTCAGTCGTAACCACTCTCTCGCCCACTTTTCCCCTTTATTCCT
CCCCTAGCTCAAACTTACTTACGACGTTGCCGGTGTCACGTTTCTTGCCC
TTGGGAACGGGGCACCAGACGTGTTTTCCTCAATTGCCGCCTTTTCTTCC
TCGGATCCTTCCGTTGCCCTAATAGGGATATGCGAGCTGCTGGGAGCTTC
CGTGTTCGTGACGACAGTTGTAGTTGGCGCCGTGGCCTTGCTGCACCCGG
CGTCGGTGCGTCCCCAGGCCTTTGCTCGGGATATTTTTTTTCAAGTCCTG
GCCAATCTGCTGCTGACGGCATCAGCTATCTATGGAAGGGTGA
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Coding sequence (CDS) from alignment at scaffold_15:271218..271960-

>mRNA_6292 ID=mRNA_6292|Name=jgi.p|Nanoce1779_2|89478|organism=Nannochloropsis oceanica|type=CDS|length=552bp|location=Sequence derived from alignment at scaffold_15:271218..271960- (Nannochloropsis oceanica)
GGATATGCGAGCTGCTGGGAGCTTCCGTGTTCGTGAATGGACGACCCCTA
CCTCTCCTCCTCGACCTGTTCCTGGCATCCGCCGGACGACGGCAGCACGT
CCCCCGCCATGGGACCCTTGGGAATTGATTACATCTACGCCTATCACTGC
GGATTCAAGGAGCATGGCTGGTTATTTTTCCCATGTTTGTTGGCTTGGGG
GTCGTTCATTACGTACTTGATGGGGCACACGGCTGATGCTTATTTCTCGC
CGACGCTGGCCACGCTATCGGACAAGGGATATGCGAGCTGCTGGGAGCTT
CCGTGTTCGTGAATGGACGACCCCTACCTCTCCTCCTCGACCTGTTCCTG
GCATCCGCCGGACGACGGCAGCACGTCCCCCGCCATGGGACCCTTGGGAA
TTGATTACATCTACGCCTATCACTGCGGATTCAAGGAGCATGGCTGGTTA
TTTTTCCCATGTTTGTTGGCTTGGGGGTCGTTCATTACGTACTTGATGGG
GCACACGGCTGATGCTTATTTCTCGCCGACGCTGGCCACGCTATCGGACA
AG
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Synonyms
Publications