jgi.p|Nanoce1779_2|594488, mRNA_6291 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594488
Unique NamemRNA_6291
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1191
Alignment locationscaffold_15:269449..270639 -

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Properties
Property NameValue
TranscriptId594574
TrackFilteredModels2
ProteinId594488
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:269449..270639 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594488gene_6291Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594488mRNA_6291-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6291CDS_6291Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6291 ID=mRNA_6291|Name=jgi.p|Nanoce1779_2|594488|organism=Nannochloropsis oceanica|type=mRNA|length=1191bp
TGGCAAGAATCATCTCCTAAAATGCCCAAGGTTTCCCCCTCCTCTGCCAA
GAGAAACGGCAGTACCAACAGCAGCAGCAGCAGCGGCAGCAGCGGCACCG
ACAAGAGCAACAGCAACAACAATGGCTGTCGTTCCTTCGTCCCCTTCAAT
ACGGCCCTAGGCAAAAACCAAGACGACGCCTACAAAGTCACCTCTCTCCC
TTCCGTACCTTCTTCGCTTCCTCCCTCCCGCTCCTCCCCCTCCCACCATG
CTTCCCCTAAACCGCCCACCCGTCGTCGGCGTCATTCGTCAGTGTGGGAT
AACATGTACTGGCACCACTGGCGGCTCCGACGGCGCTTTCTCCGTGAATT
TCACTCTTCGGACTTCCTCCAACAGAATCTGTTTCTTAAACTCCTCACCA
TCGTGCACCTCCCCCTCGTCCTCGCCCGCAATCTGACCATCCCACTGGTG
GAAGAGGAGGCCTGGTCGCGCACTAACGCCTCCCTCTGTCCCTTGTTCGC
CCCCCTCTTCCTTTTGTACATCGGGGGTAAGCTTGAGGCGACATTTGGGG
TGGAGGAGAAAAGCGGCTTCCCTGTGTGGGTGCTCGTGGCCTGCATAGGA
GGGGTGGGCGCGATGTTTGTAAGACTAACCACGCATGAATCCCGCCCTCC
CTCCAGCTTTACCTACGTGATGGTGCTGACCGTGATGGCGTTTCTGATGT
GCTCGGCGTGGATCTACACCATTGCCACGGAGCTGGTGGCGGTGGTGACC
GCCTTAGGGGAGTTGCTCTCCCTCCCTCCCTCCCTTTTGGGGATGACCCT
CCTCGCCTGGGGAAACAGCGCGGGCGACTTGATCACGAACATTGCTGTGG
CCAGGGCAGGTTTAAGCGACATGGCCGTCGCAGGGTGCTTCGCGGGCCCG
ACTTTCAATCTGTTGATGGGATTGGGATGCAGCTTCTTGTGGAAAGTGTG
GTTGACCGGCCCGTTCACCCTGCATTTTGACGAGCGTGCCTACATCTCCC
TTTCGTTTCTGTACCTGGCGCTGGGGGTCAATCTAGGGGTGGGATATTAC
AGTGGTTTTAGGCTGGGAAAGACGTTGGCGTGGCCGTTAATGGGCCTGTA
CGCGACCTGTACGCTGTTGCAGGTGGTTCTGATCGGGCTAGGGGTGGGGA
CTGTGTGAGGGGGAGGGAGGGGAGGCAAGGGGAAGAATAGG
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protein sequence of jgi.p|Nanoce1779_2|594488

>mRNA_6291-protein ID=mRNA_6291-protein|Name=jgi.p|Nanoce1779_2|594488|organism=Nannochloropsis oceanica|type=polypeptide|length=379bp
MPKVSPSSAKRNGSTNSSSSSGSSGTDKSNSNNNGCRSFVPFNTALGKNQ
DDAYKVTSLPSVPSSLPPSRSSPSHHASPKPPTRRRRHSSVWDNMYWHHW
RLRRRFLREFHSSDFLQQNLFLKLLTIVHLPLVLARNLTIPLVEEEAWSR
TNASLCPLFAPLFLLYIGGKLEATFGVEEKSGFPVWVLVACIGGVGAMFV
RLTTHESRPPSSFTYVMVLTVMAFLMCSAWIYTIATELVAVVTALGELLS
LPPSLLGMTLLAWGNSAGDLITNIAVARAGLSDMAVAGCFAGPTFNLLMG
LGCSFLWKVWLTGPFTLHFDERAYISLSFLYLALGVNLGVGYYSGFRLGK
TLAWPLMGLYATCTLLQVVLIGLGVGTV*
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mRNA from alignment at scaffold_15:269449..270639-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6291 ID=mRNA_6291|Name=jgi.p|Nanoce1779_2|594488|organism=Nannochloropsis oceanica|type=mRNA|length=1191bp|location=Sequence derived from alignment at scaffold_15:269449..270639- (Nannochloropsis oceanica)
TGGCAAGAATCATCTCCTAAAATGCCCAAGGTTTCCCCCTCCTCTGCCAA
GAGAAACGGCAGTACCAACAGCAGCAGCAGCAGCGGCAGCAGCGGCACCG
ACAAGAGCAACAGCAACAACAATGGCTGTCGTTCCTTCGTCCCCTTCAAT
ACGGCCCTAGGCAAAAACCAAGACGACGCCTACAAAGTCACCTCTCTCCC
TTCCGTACCTTCTTCGCTTCCTCCCTCCCGCTCCTCCCCCTCCCACCATG
CTTCCCCTAAACCGCCCACCCGTCGTCGGCGTCATTCGTCAGTGTGGGAT
AACATGTACTGGCACCACTGGCGGCTCCGACGGCGCTTTCTCCGTGAATT
TCACTCTTCGGACTTCCTCCAACAGAATCTGTTTCTTAAACTCCTCACCA
TCGTGCACCTCCCCCTCGTCCTCGCCCGCAATCTGACCATCCCACTGGTG
GAAGAGGAGGCCTGGTCGCGCACTAACGCCTCCCTCTGTCCCTTGTTCGC
CCCCCTCTTCCTTTTGTACATCGGGGGTAAGCTTGAGGCGACATTTGGGG
TGGAGGAGAAAAGCGGCTTCCCTGTGTGGGTGCTCGTGGCCTGCATAGGA
GGGGTGGGCGCGATGTTTGTAAGACTAACCACGCATGAATCCCGCCCTCC
CTCCAGCTTTACCTACGTGATGGTGCTGACCGTGATGGCGTTTCTGATGT
GCTCGGCGTGGATCTACACCATTGCCACGGAGCTGGTGGCGGTGGTGACC
GCCTTAGGGGAGTTGCTCTCCCTCCCTCCCTCCCTTTTGGGGATGACCCT
CCTCGCCTGGGGAAACAGCGCGGGCGACTTGATCACGAACATTGCTGTGG
CCAGGGCAGGTTTAAGCGACATGGCCGTCGCAGGGTGCTTCGCGGGCCCG
ACTTTCAATCTGTTGATGGGATTGGGATGCAGCTTCTTGTGGAAAGTGTG
GTTGACCGGCCCGTTCACCCTGCATTTTGACGAGCGTGCCTACATCTCCC
TTTCGTTTCTGTACCTGGCGCTGGGGGTCAATCTAGGGGTGGGATATTAC
AGTGGTTTTAGGCTGGGAAAGACGTTGGCGTGGCCGTTAATGGGCCTGTA
CGCGACCTGTACGCTGTTGCAGGTGGTTCTGATCGGGCTAGGGGTGGGGA
CTGTGTGAGGGGGAGGGAGGGGAGGCAAGGGGAAGAATAGG
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Coding sequence (CDS) from alignment at scaffold_15:269449..270639-

>mRNA_6291 ID=mRNA_6291|Name=jgi.p|Nanoce1779_2|594488|organism=Nannochloropsis oceanica|type=CDS|length=1137bp|location=Sequence derived from alignment at scaffold_15:269449..270639- (Nannochloropsis oceanica)
ATGCCCAAGGTTTCCCCCTCCTCTGCCAAGAGAAACGGCAGTACCAACAG
CAGCAGCAGCAGCGGCAGCAGCGGCACCGACAAGAGCAACAGCAACAACA
ATGGCTGTCGTTCCTTCGTCCCCTTCAATACGGCCCTAGGCAAAAACCAA
GACGACGCCTACAAAGTCACCTCTCTCCCTTCCGTACCTTCTTCGCTTCC
TCCCTCCCGCTCCTCCCCCTCCCACCATGCTTCCCCTAAACCGCCCACCC
GTCGTCGGCGTCATTCGTCAGTGTGGGATAACATGTACTGGCACCACTGG
CGGCTCCGACGGCGCTTTCTCCGTGAATTTCACTCTTCGGACTTCCTCCA
ACAGAATCTGTTTCTTAAACTCCTCACCATCGTGCACCTCCCCCTCGTCC
TCGCCCGCAATCTGACCATCCCACTGGTGGAAGAGGAGGCCTGGTCGCGC
ACTAACGCCTCCCTCTGTCCCTTGTTCGCCCCCCTCTTCCTTTTGTACAT
CGGGGGTAAGCTTGAGGCGACATTTGGGGTGGAGGAGAAAAGCGGCTTCC
CTGTGTGGGTGCTCGTGGCCTGCATAGGAGGGGTGGGCGCGATGTTTGTA
AGACTAACCACGCATGAATCCCGCCCTCCCTCCAGCTTTACCTACGTGAT
GGTGCTGACCGTGATGGCGTTTCTGATGTGCTCGGCGTGGATCTACACCA
TTGCCACGGAGCTGGTGGCGGTGGTGACCGCCTTAGGGGAGTTGCTCTCC
CTCCCTCCCTCCCTTTTGGGGATGACCCTCCTCGCCTGGGGAAACAGCGC
GGGCGACTTGATCACGAACATTGCTGTGGCCAGGGCAGGTTTAAGCGACA
TGGCCGTCGCAGGGTGCTTCGCGGGCCCGACTTTCAATCTGTTGATGGGA
TTGGGATGCAGCTTCTTGTGGAAAGTGTGGTTGACCGGCCCGTTCACCCT
GCATTTTGACGAGCGTGCCTACATCTCCCTTTCGTTTCTGTACCTGGCGC
TGGGGGTCAATCTAGGGGTGGGATATTACAGTGGTTTTAGGCTGGGAAAG
ACGTTGGCGTGGCCGTTAATGGGCCTGTACGCGACCTGTACGCTGTTGCA
GGTGGTTCTGATCGGGCTAGGGGTGGGGACTGTGTGA
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Synonyms
Publications