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Properties
| Property Name | Value |
|---|
| TranscriptId | 549807 |
| Track | FilteredModels2 |
| ProteinId | 549721 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_2 | supercontig | scaffold_2:48731..52075 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_629 ID=mRNA_629|Name=jgi.p|Nanoce1779_2|549721|organism=Nannochloropsis oceanica|type=mRNA|length=2768bp
AACAGTAAGATCAAAAAGCTGAAGGGGGGAGCGCTCTTTATTTCGCGGGC
GCTAGCCATGCCCGGCAGCCTCCTGCCAAGACGCCCTCCCTCAACGATCG
TCGTCCTGCTACTATTTTTAATTCTGCAAGTGATGCTTGCAGCCGCCCGC
CGTAGCTGCGCTAGCTATCGACCCGTCTCGGTCACTCTTGCATTAGTTCC
TACTTCTGGTACCACATCAGCAACGCGGACGTCTTTCGGAAGAAGCGCTC
CCGCAATGTCGACCAAGGGTGCAGCATTTAAGACTTTGGCAGCACCCACC
GAGTACGAAGAGGCTTTTTCCCCCGCCCTTCCCATCAGTCCTGCCCCTCA
AGCCCTCAGCCTCTCGCCCACTGCTTCCTTGCCCCCCTGGCATCTCTCCC
CTTATCCTTCCCTCTTTTCCCAGGTCATTAAAAAGTCTCGCTTCTTGACT
CACGCCGTCTCTGCTACGTCATTTGCCGAAGCCCAGGACTTCTTGAAGCG
GGTGTCTGATTTGAAGGCCACGCATAATTGTTGGGGATGGCGCGGACGAG
GCGAAGAGCGTAGTTCGGACGATGGCGAGCCTGGCGGGACGGCCGGGCGG
CCCATCCTCTCTGCCATAGAAAGCGAGGAGTTGGTGGACGTGGTTGTGGT
GGTGACAAGGTATTTTGGGGGCATTAAGCTTGGCGCTGGTGGCCTGGTGC
GGGCGTATGGCGGCGTGGCGCGAACATGTTTGAGGAACGCAGAGACAGTG
ACTCATATTCCCAAGGTTTTGGTGCGATTGATAGCACCTTTGGCCATGTC
GGGGGCAGTCTTCCAGACCATCAGTCGTGTTGAGAAGGTAGGGGAGGACT
ACACGGCTGAGGAGGTGATGGTGGACGTCAAGGTGGAGGCGAGTCAAGTG
GAGGGACTGCGGCAGCAGCTGCAGGACGCCACCAAGGGGGCAGGAAGGTT
GGAAGAAAAAGCATGAAAAGAAATGAACTTAAAGAAATGGTTTACAATCA
CAACGAACAAATTGACATGCACCAAGCACGCACATTCCTTTTCCTTCTCG
TCTACGACAGTTCCAAAAAAGGGATAACGATGAGTGCACACTCGCACTCG
CAGCCACAGCTTGGAAACACCATTGCACAGCCACTCGACCCAGCCTGCTT
TTGTTTTAAGACGAGAACATCTTGTGCACAAGGAAACAAAGATGCCCAGT
CAGGGGCTTTCTTAAATTGCTTAGAAAGGCGTCGAAACTAGAAGATCGAA
AGGCGTGCGTGCGGACGAGACAACAATGAAGTAAAAAGAGGGCGAGCCGG
CACGGTCCGTGCTTCTAATTTGCCAGATCATTCCCTCCTGCGCCCTACCA
AGCGTCCCCGACACGCCCTCCCTTCCCATTCAAACAGTGCCGTATTGTGG
CAGACGGACGTAGGAGTGGGAAGACTCCTGTAGTCCACTGACAAACCTGG
GCAACATCGTCTGTGCGGCAAGGACGAAGACGAAGAAATCTTGGGCAGCT
CGGACCTGACGATGTACTTGGCTTACAATACACCACCAACCATACGCCAC
ACTACACACAGGTCATACCACTGTGTATCCTAGTCACTCTCGCATAAGCT
TGTCAAGTCGCCGCCGCTTCTCAACGAGTATTTTTTTACCAAGCCGACCC
ACGAGAGGAAAAAAGAGAAGGCTCGTTTTCTTCGGAGCACCTCCTGCTCC
ACCACCGCCACTGCGACAAAGCAAGCACCACCACCACGCGAACAATACAA
CATACGGAGCATGGCTGATATTTCTGTTACCCCTATAGAAGACGCCGTCG
AAACTGTGGCCCTTTCCCCCATGCCTGTGATCGAGCAGGAACAAGAACAC
CAGCAGCTGAAGCACGAGGCTCCCGATCAAGAAGGACTGCAGCAGCAGGA
AGACCATCAGCACCAAGTGCACCAGCAAGAACAAGAGCAACATCAGCCGA
AGATAGATGTGCACGAACCCCCACAATCCGCGCCGTTCGTGGCTCCCGGT
GAGGTGGACGTGGTGCCTGCGCCTCTGATCCTCTCGCAGCTCCCATGCAT
GCCTTCCAAAGGCCCCACCTCGACTATTGCCACCAGGAAAAGCAGCATTT
TAAGTGGCGGCACAGGAAACCAAGGCCGATGGACAGAAGCAGAACATGAG
TTGTTCTTGGAGGGCATTGATACGTATGGGAAGGGGGCGTGGAAGGTGAT
TAGTGAGAAGGTTGTCAAGTCCCGGAGTGCGGAGCAGGTGAGGATACACG
CGCAGAAGTATTTCCTACGGCAGACAAAGCAGCAGAGCAAGAAGAAAAAT
GACGATGTCGCTGGTAGTTGTACTTTCAGGGGGGGAGGAGGGGCAGCGGG
TGGGGCAGGAGGAGGAGGGGAGGGTGGAGTCGCGGATGGAGAGGGGAAGA
CCAAGGCGGGAGGGAAGAGCAGCAAGGAAGGGCATTGGACAGACGAGGAG
CACGAACTATTCTTGAAGTGCTGGGAAAAGTACGGCAAAAGCTGGAAGAA
ATTAAGTGAGATCATAACGACGCGGACGAACGAACAAATCCGGACCCATG
CCCAGAAATATTTTGCGAAATTGCGCGAACTGAGAGAGAGGGGGTACTCT
GGTGCCTATTACATGGACGGCACGAGGCATTTGACAAAGACCTTTTTGGG
TGTTGCCGGTGGTGGTGGTGGGGGTCGGGGCGGGGCTGCACATGGGCCGG
TGGCGGGCGGGGGGCGGGGGGGGAGGGAGGGGAGGGAGAAGAGGGGGCAG
AGGGGGAGGAGGGGGTAA back to topprotein sequence of jgi.p|Nanoce1779_2|549721 >mRNA_629-protein ID=mRNA_629-protein|Name=jgi.p|Nanoce1779_2|549721|organism=Nannochloropsis oceanica|type=polypeptide|length=336bp
MADISVTPIEDAVETVALSPMPVIEQEQEHQQLKHEAPDQEGLQQQEDHQ
HQVHQQEQEQHQPKIDVHEPPQSAPFVAPGEVDVVPAPLILSQLPCMPSK
GPTSTIATRKSSILSGGTGNQGRWTEAEHELFLEGIDTYGKGAWKVISEK
VVKSRSAEQVRIHAQKYFLRQTKQQSKKKNDDVAGSCTFRGGGGAAGGAG
GGGEGGVADGEGKTKAGGKSSKEGHWTDEEHELFLKCWEKYGKSWKKLSE
IITTRTNEQIRTHAQKYFAKLRELRERGYSGAYYMDGTRHLTKTFLGVAG
GGGGGRGGAAHGPVAGGGRGGREGREKRGQRGRRG* back to topmRNA from alignment at scaffold_2:48731..52075- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_629 ID=mRNA_629|Name=jgi.p|Nanoce1779_2|549721|organism=Nannochloropsis oceanica|type=mRNA|length=3345bp|location=Sequence derived from alignment at scaffold_2:48731..52075- (Nannochloropsis oceanica)
AACAGTAAGATCAAAAAGCTGAAGGGGGGAGCGCTCTTTATTTCGCGGGC
GCTAGCCATGCCCGGCAGCCTCCTGCCAAGACGCCCTCCCTCAACGATCG
TCGTCCTGCTACTATTTTTAATTCTGCAAGTGATGCTTGCAGCCGCCCGC
CGTAGCTGCGCTAGCTATCGACCCGTCTCGGTCACTCTTGCATTAGTTCC
TACTTCTGGTACCACATCAGCAACGCGGACGTCTTTCGGAAGAAGCGCTC
CCGCAATGTCGACCAAGGGTGCAGCATTTAAGACTTTGGCAGCACCCACC
GAGTACGAAGAGGTACGTCGGCGGCAAGAAGCGAAATGGCAAGGGATAAC
AGGAAGGTTTCACTCAAGAATGTCCTACCTCCTTTCCGCCTATTTTCTCA
AGGCTTTTTCCCCCGCCCTTCCCATCAGTCCTGCCCCTCAAGCCCTCAGC
CTCTCGCCCACTGCTTCCTTGCCCCCCTGGCATCTCTCCCCTTATCCTTC
CCTCTTTTCCCAGGTCATTAAAAAGTCTCGCTTCTTGACTCACGCCGTCT
CTGCTACGTCATTTGCCGAAGCCCAGGACTTCTTGAAGCGGGTGTCTGAT
TTGAAGGCCACGCATAATTGTTGGGGATGGCGGTACGTGAGGAGGGAGAC
TTTGCGTTCTTCGGTGGGCGGGTGAGACAAGAGTGGAACACGAGTGTATG
CTCTGCGTCCATCAAAAAGATTGTTTTCCGAAATGATGCATGCATACACG
CACGACAACAATACTTACTCCACTTGTCCTCTCTCTCTCCTACCTCCCTT
AACAAATGAACAGCGGACGAGGCGAAGAGCGTAGTTCGGACGATGGCGAG
CCTGGCGGGACGGCCGGGCGGCCCATCCTCTCTGCCATAGAAAGCGAGGA
GTTGGTGGACGTGGTTGTGGTGGTGACAAGGTAATGTTATGAAAAGAGCG
GAGGGAAGGAGGGATGGGGGGAGGGAGGGAAGAGAAGGTCGATGTTGTTA
AGGAGGGGAGGGAGGGGATGAGGTTGATGAGCCCTTTTTTCTGCATGCAC
TTCCTTCAGCTATGTACCAATATTATTGATTTTAAGCCCGCTTATCGTTA
AATTAAAATTAAACAAGGTATTTTGGGGGCATTAAGCTTGGCGCTGGTGG
CCTGGTGCGGGCGTATGGCGGCGTGGCGCGAACATGTTTGAGGAACGCAG
AGACAGTGACTCATATTCCCAAGGTTTTGGTGCGATTGATAGCACCTTTG
GCCATGTCGGGGGCAGTCTTCCAGGTGAGTGTTCATAAATTTTATTTCTA
AACTAATTTATACTATTTTATGCTATGTATTTCTATTTCATTTACTTGTT
CGAACTCCATTTCATCGAAACTTCCATCAAAACCCCACGACAGACCATCA
GTCGTGTTGAGAAGGTAGGGGAGGACTACACGGCTGAGGAGGTGATGGTG
GACGTCAAGGTGGAGGCGAGTCAAGTGGAGGGACTGCGGCAGCAGCTGCA
GGACGCCACCAAGGGGGCAGGAAGGTTGGAAGAAAAAGCATGAAAAGAAA
TGAACTTAAAGAAATGGTTTACAATCACAACGAACAAATTGACATGCACC
AAGCACGCACATTCCTTTTCCTTCTCGTCTACGACAGTTCCAAAAAAGGG
ATAACGATGAGTGCACACTCGCACTCGCAGCCACAGCTTGGAAACACCAT
TGCACAGCCACTCGACCCAGCCTGCTTTTGTTTTAAGACGAGAACATCTT
GTGCACAAGGAAACAAAGATGCCCAGTCAGGGGCTTTCTTAAATTGCTTA
GAAAGGCGTCGAAACTAGAAGATCGAAAGGCGTGCGTGCGGACGAGACAA
CAATGAAGTAAAAAGAGGGCGAGCCGGCACGGTCCGTGCTTCTAATTTGC
CAGATCATTCCCTCCTGCGCCCTACCAAGCGTCCCCGACACGCCCTCCCT
TCCCATTCAAACAGTGCCGTATTGTGGCAGACGGACGTAGGAGTGGGAAG
ACTCCTGTAGTCCACTGACAAACCTGGGCAACATCGTCTGTGCGGCAAGG
ACGAAGACGAAGAAATCTTGGGCAGCTCGGACCTGACGATGTACTTGGCT
TACAATACACCACCAACCATACGCCACACTACACACAGGTCATACCACTG
TGTATCCTAGTCACTCTCGCATAAGCTTGTCAAGTCGCCGCCGCTTCTCA
ACGAGTATTTTTTTACCAAGCCGACCCACGAGAGGAAAAAAGAGAAGGCT
CGTTTTCTTCGGAGCACCTCCTGCTCCACCACCGCCACTGCGACAAAGCA
AGCACCACCACCACGCGAACAATACAACATACGGAGCATGGCTGATATTT
CTGTTACCCCTATAGAAGACGCCGTCGAAACTGTGGCCCTTTCCCCCATG
CCTGTGATCGAGCAGGAACAAGAACACCAGCAGCTGAAGCACGAGGCTCC
CGATCAAGAAGGACTGCAGCAGCAGGAAGACCATCAGCACCAAGTGCACC
AGCAAGAACAAGAGCAACATCAGCCGAAGATAGATGTGCACGAACCCCCA
CAATCCGCGCCGTTCGTGGCTCCCGGTGAGGTGGACGTGGTGCCTGCGCC
TCTGATCCTCTCGCAGCTCCCATGCATGCCTTCCAAAGGCCCCACCTCGA
CTATTGCCACCAGGAAAAGCAGCATTTTAAGTGGCGGCACAGGAAACCAA
GGCCGATGGACAGAAGCAGAACATGAGTTGTTCTTGGAGGGCATTGATAC
GTATGGGAAGGGGGCGTGGAAGGTGATTAGTGAGAAGGTTGTCAAGTCCC
GGAGTGCGGAGCAGGTGAGGATACACGCGCAGAAGTATTTCCTACGGCAG
ACAAAGCAGCAGAGCAAGAAGAAAAATGACGATGTCGCTGGTAGTTGTAC
TTTCAGGGGGGGAGGAGGGGCAGCGGGTGGGGCAGGAGGAGGAGGGGAGG
GTGGAGTCGCGGATGGAGAGGGGAAGACCAAGGCGGGAGGGAAGAGCAGC
AAGGAAGGGCATTGGACAGACGAGGAGCACGAACTATTCTTGAAGTGCTG
GGAAAAGTACGGCAAAAGCTGGAAGAAATTAAGTGAGATCATAACGACGC
GGACGAACGAACAAATCCGGACCCATGCCCAGAAATATTTTGCGAAATTG
CGCGAACTGAGAGAGAGGGGGTACTCTGGTGCCTATTACATGGACGGCAC
GAGGCATTTGACAAAGACCTTTTTGGGTGTTGCCGGTGGTGGTGGTGGGG
GTCGGGGCGGGGCTGCACATGGGCCGGTGGCGGGCGGGGGGCGGGGGGGG
AGGGAGGGGAGGGAGAAGAGGGGGCAGAGGGGGAGGAGGGGGTAA back to topCoding sequence (CDS) from alignment at scaffold_2:48731..52075- >mRNA_629 ID=mRNA_629|Name=jgi.p|Nanoce1779_2|549721|organism=Nannochloropsis oceanica|type=CDS|length=1008bp|location=Sequence derived from alignment at scaffold_2:48731..52075- (Nannochloropsis oceanica)
ATGGCTGATATTTCTGTTACCCCTATAGAAGACGCCGTCGAAACTGTGGC
CCTTTCCCCCATGCCTGTGATCGAGCAGGAACAAGAACACCAGCAGCTGA
AGCACGAGGCTCCCGATCAAGAAGGACTGCAGCAGCAGGAAGACCATCAG
CACCAAGTGCACCAGCAAGAACAAGAGCAACATCAGCCGAAGATAGATGT
GCACGAACCCCCACAATCCGCGCCGTTCGTGGCTCCCGGTGAGGTGGACG
TGGTGCCTGCGCCTCTGATCCTCTCGCAGCTCCCATGCATGCCTTCCAAA
GGCCCCACCTCGACTATTGCCACCAGGAAAAGCAGCATTTTAAGTGGCGG
CACAGGAAACCAAGGCCGATGGACAGAAGCAGAACATGAGTTGTTCTTGG
AGGGCATTGATACGTATGGGAAGGGGGCGTGGAAGGTGATTAGTGAGAAG
GTTGTCAAGTCCCGGAGTGCGGAGCAGGTGAGGATACACGCGCAGAAGTA
TTTCCTACGGCAGACAAAGCAGCAGAGCAAGAAGAAAAATGACGATGTCG
CTGGTAGTTGTACTTTCAGGGGGGGAGGAGGGGCAGCGGGTGGGGCAGGA
GGAGGAGGGGAGGGTGGAGTCGCGGATGGAGAGGGGAAGACCAAGGCGGG
AGGGAAGAGCAGCAAGGAAGGGCATTGGACAGACGAGGAGCACGAACTAT
TCTTGAAGTGCTGGGAAAAGTACGGCAAAAGCTGGAAGAAATTAAGTGAG
ATCATAACGACGCGGACGAACGAACAAATCCGGACCCATGCCCAGAAATA
TTTTGCGAAATTGCGCGAACTGAGAGAGAGGGGGTACTCTGGTGCCTATT
ACATGGACGGCACGAGGCATTTGACAAAGACCTTTTTGGGTGTTGCCGGT
GGTGGTGGTGGGGGTCGGGGCGGGGCTGCACATGGGCCGGTGGCGGGCGG
GGGGCGGGGGGGGAGGGAGGGGAGGGAGAAGAGGGGGCAGAGGGGGAGGA
GGGGGTAA back to top
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