jgi.p|Nanoce1779_2|594467, mRNA_6288 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|594467
Unique Name	mRNA_6288
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1196
Alignment location	scaffold_15:248198..250351 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	594553
Track	FilteredModels2
ProteinId	594467

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:248198..250351 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594467	gene_6288	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594467	mRNA_6288-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6288	CDS_6288	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:248198..250351-
coding sequence from alignment at scaffold_15:248198..250351-

mRNA sequence

>mRNA_6288 ID=mRNA_6288|Name=jgi.p|Nanoce1779_2|594467|organism=Nannochloropsis oceanica|type=mRNA|length=1196bp
GTGTCATGGCTGCTGGAGTTGCTGCAGACCTATCTACTGCCAAGGGATGG
GAACGGGGTGAGGAGGGTGAGACTTACATGGTGATGATGATGCAGCAGAG
GGACAGGACATAGACACAAGAGGTGAAACGATCCTAACTCAAAGTCAACT
GACAGGCTTGTTCTGCGTGTATATGAGGCGGAGGAGGCGTGTGTGGGCAT
GAGGATGAAGGGGGCTGGAGGGGAGGAGGACATGGGCGTTGCCATCGTGA
TAATTTGCTCTCCTTCACGGATGGGGGAAGGCTAAGGCAAGCGCTTGGAC
ACGTTGCGTGTGTGCCTCTTATAAAAACCCACGGACTCACACGTGATACA
CAGACACGCACAGGGACAGTCAAGACGACATTCTCCGCGGGCCCCGGAGT
TGGTGCTGGTAGGCCTTTTGTCCAAAAGGCCCGATCGCCAGACAAGACTT
CCTTCCGCGATTTATCAAGCTCAAGCCCAACAGCCGCCCACCCACCACAC
TCACTCACAAACCACGTCCTCAAACCGCACAGGCAACGCCCCTACCGACC
CTCAGCAGTCTGAAACTATGAGCATCTGCTTTCTCTGTTTCCCCGACGAC
GTTATTCCCGGCTATGCGCGGTCGGACAATCCCTACACATTTCAGGTGTC
CATGGCCAAGACCTGCATTGCAGACCCGTGCTGCTGCCTAGCCTCGTTGG
TATGTCCCTTGCCTGTGGCGTGTATCAACCGGCACAGGGCGTTGGAGGGG
AAGATGGAAGAGTACAAATGTTGTCAAGGGTATTACCCCCTCTGCGGTAT
GCGCCCCGGCGAGGTGGGTGAAAGCTCTTGCCCAAGCCTCTGTCTGTGCT
TGGAAGCCACCTGCTGCTTCACATGCGCCGTGTCGGCAACTCGAAATTAC
TTGATGGACAAGTACAGCATTCATCCGGACCCGATGGACTATCAGATCGT
CCGATGCAGTAGTAACGCTATCCAATGCCTCTCCTGCATTTGCTCCCTGG
CTTCTATCTGTATCGAGGACCTTAGGGAAGGCGCGCGGATTCTGCGGCAT
ATCGCACATATCACCTTCTGCACCGTGCAAGGCTGCATGCAGACGCAAAC
CGCTGTCGAGATTGCCTTCCAGCACAAAAAAGGTGTTGAGGCCCCTCAGG
CTAACAGAATGAATGATCGCTTTTAGGCTCAAGTAGGGAGGGAGGG

protein sequence of jgi.p|Nanoce1779_2|594467

>mRNA_6288-protein ID=mRNA_6288-protein|Name=jgi.p|Nanoce1779_2|594467|organism=Nannochloropsis oceanica|type=polypeptide|length=203bp
MSICFLCFPDDVIPGYARSDNPYTFQVSMAKTCIADPCCCLASLVCPLPV
ACINRHRALEGKMEEYKCCQGYYPLCGMRPGEVGESSCPSLCLCLEATCC
FTCAVSATRNYLMDKYSIHPDPMDYQIVRCSSNAIQCLSCICSLASICIE
DLREGARILRHIAHITFCTVQGCMQTQTAVEIAFQHKKGVEAPQANRMND
RF*

mRNA from alignment at scaffold_15:248198..250351-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6288 ID=mRNA_6288|Name=jgi.p|Nanoce1779_2|594467|organism=Nannochloropsis oceanica|type=mRNA|length=2154bp|location=Sequence derived from alignment at scaffold_15:248198..250351- (Nannochloropsis oceanica)
GTGTCATGGCTGCTGGAGTTGCTGCAGACCTATCTACTGCCAAGGGATGG
GAACGGGGTGAGGAGGGTGAGACTTACATGGTGATGATGATGCAGCAGAG
GGACAGGACATAGACACAAGAGGTGAAACGATCCTAACTCAAAGTCAACT
GACAGGCTTGTTCTGCGTGTATATGAGGCGGAGGAGGCGTGTGTGGGCAT
GAGGATGAAGGGGGCTGGAGGGGAGGAGGACATGGGCGTTGCCATCGTGA
TAATTTGCTCTCCTTCACGGATGGGGGAAGGCTAAGGCAAGCGCTTGGAC
ACGTTGCGTGTGTGCCTCTTATAAAAACCCACGGACTCACACGTGATACA
CAGACACGCACAGGGACAGTCAAGACGACATTCTCCGCGGGCCCCGGAGT
TGGTGCTGGTAGGCCTTTTGTCCAAAAGGCCCGATCGCCAGACAAGACTT
CCTTCCGCGATTTATCAAGCTCAAGCCCAACAGCCGCCCACCCACCACAC
TCACTCACAAACCACGTCCTCAAACCGCACAGGCAACGCCCCTACCGACC
CTCAGCAGTCTGAAACTATGAGCATCTGCTTTCTCTGTTTCCCCGACGAC
GTTATTCCGTACGTGCATGGCCTAGGTGGTTGTAGTTGTTCCCCGCTTGT
ATAAAGCATTATAAATATAAAGTATATACATGGTCGTGTAGGGGTGCTTC
ACCTGATTTTACGTGCATAAATGTAAATTAAAGTGCCAAAATCTCCCTTC
TTTTACACCGATACTTTCTCCCCTTTCCCTTCACCCGATACTCTATCTCT
CCCTTCCCTTTTCCCTTACAACACACCAAAGCGGCTATGCGCGGTCGGAC
AATCCCTACACATTTCAGGTGTCCATGGCCAAGACCTGCATTGCAGACCC
GTGCTGCTGCCTAGCCTCGTTGGTATGTCCCTTGCCTGTGGCGTGTATCA
ACCGGCACAGGGCGTTGGAGGGGAAGATGGAAGAGTACAAATGTTGTCAA
GGGTGAGTGACTTGAAGAGGGATTGTGTAGATATAGCATTTTGGAGAAAA
TGATTAGTGTTGTGCCTCTCGCAGTGATTGGTGGTACCGCATTTCACCTC
CCAACATGTGTGACTACTAGTACCGCGAATCACCCATTCACGCATGATGG
ATCGTGCTATTCCTCCCTCAGATCCACTGACAAAGTCCTTCCTCATACAT
CCCTTCCTTGTACAATCCGCCCTCTGCGCTGTACCCTGGGAGGAGATAGG
CGGAAAATGATCTGTAGCAGCATCCCTTCGCTCTCCTGTCATCCCTCTCT
CAGTAAACGTAGATGAGAGTCCCTCTCCTGACCTCCATCTCCATGCATTG
TATACCTAAACATTCACACTCATGCCTACATATATATCACTTTAAAAGGT
ATTACCCCCTCTGCGGTATGCGCCCCGGCGAGGTGGGTGAAAGCTCTTGC
CCAAGCCTCTGTCTGTGCTTGGAAGCCACCTGCTGCTTCACATGCGCCGT
GTCGGCAACTCGAAATTACTTGATGGACAAGTACAGCATTCATCCGGACC
CGATGGACTATCAGATCGGTAGGGAGGAGAGGGAGGGAGGGAAGGAGGGA
GGGAGGAAGAGACCAATAATTCTTTGGATAAGGGTCGAGGGCGATGTGAG
ACCTGTCAATATTTCAAGCGTCCTGCTTTCCACCTTCCCTCTCACCCTCC
CTCGCTGCCTCCCTCCCTGCAGTCCGATGCAGTAGTAACGCTATCCAATG
CCTCTCCTGCATTTGCTCCCTGGCTTCTATCTGTATCGAGGACCTTAGGG
AAGGCGCGCGGATTCTGCGGCATATCGCACATATCACCTTCTGCACCGTG
CAAGGCTGCATGCAGGTGAGGCAGGCAGGGAGGGAGGGAGGGAGGGTTAT
GGTTTCTCTCCTTTTCGACTCTCCTTCTTTCTTCTTGGAGCCGCCTCCTC
CATTTATCGGTCGCCTGTTTCCCTCTCCCTTCATTTCATCCTCCAACTTC
CAACTTCTCCCTCCCTCCTCCCTTCCCCCCTCCCTCCCTCCCTCCGTTAG
ACGCAAACCGCTGTCGAGATTGCCTTCCAGCACAAAAAAGGTGTTGAGGC
CCCTCAGGCTAACAGAATGAATGATCGCTTTTAGGCTCAAGTAGGGAGGG
AGGG

Coding sequence (CDS) from alignment at scaffold_15:248198..250351-

>mRNA_6288 ID=mRNA_6288|Name=jgi.p|Nanoce1779_2|594467|organism=Nannochloropsis oceanica|type=CDS|length=3045bp|location=Sequence derived from alignment at scaffold_15:248198..250351- (Nannochloropsis oceanica)
ACGCAAACCGCTGTCGAGATTGCCTTCCAGCACAAAAAAGGTGTTGAGGC
CCCTCAGGCTAACAGAATGAATGATCGCTTTTAGTCCGATGCAGTAGTAA
CGCTATCCAATGCCTCTCCTGCATTTGCTCCCTGGCTTCTATCTGTATCG
AGGACCTTAGGGAAGGCGCGCGGATTCTGCGGCATATCGCACATATCACC
TTCTGCACCGTGCAAGGCTGCATGCAGGTATTACCCCCTCTGCGGTATGC
GCCCCGGCGAGGTGGGTGAAAGCTCTTGCCCAAGCCTCTGTCTGTGCTTG
GAAGCCACCTGCTGCTTCACATGCGCCGTGTCGGCAACTCGAAATTACTT
GATGGACAAGTACAGCATTCATCCGGACCCGATGGACTATCAGATCGCGG
CTATGCGCGGTCGGACAATCCCTACACATTTCAGGTGTCCATGGCCAAGA
CCTGCATTGCAGACCCGTGCTGCTGCCTAGCCTCGTTGGTATGTCCCTTG
CCTGTGGCGTGTATCAACCGGCACAGGGCGTTGGAGGGGAAGATGGAAGA
GTACAAATGTTGTCAAGGATGAGCATCTGCTTTCTCTGTTTCCCCGACGA
CGTTATTCCACGCAAACCGCTGTCGAGATTGCCTTCCAGCACAAAAAAGG
TGTTGAGGCCCCTCAGGCTAACAGAATGAATGATCGCTTTTAGTCCGATG
CAGTAGTAACGCTATCCAATGCCTCTCCTGCATTTGCTCCCTGGCTTCTA
TCTGTATCGAGGACCTTAGGGAAGGCGCGCGGATTCTGCGGCATATCGCA
CATATCACCTTCTGCACCGTGCAAGGCTGCATGCAGGTATTACCCCCTCT
GCGGTATGCGCCCCGGCGAGGTGGGTGAAAGCTCTTGCCCAAGCCTCTGT
CTGTGCTTGGAAGCCACCTGCTGCTTCACATGCGCCGTGTCGGCAACTCG
AAATTACTTGATGGACAAGTACAGCATTCATCCGGACCCGATGGACTATC
AGATCGCGGCTATGCGCGGTCGGACAATCCCTACACATTTCAGGTGTCCA
TGGCCAAGACCTGCATTGCAGACCCGTGCTGCTGCCTAGCCTCGTTGGTA
TGTCCCTTGCCTGTGGCGTGTATCAACCGGCACAGGGCGTTGGAGGGGAA
GATGGAAGAGTACAAATGTTGTCAAGGATGAGCATCTGCTTTCTCTGTTT
CCCCGACGACGTTATTCCACGCAAACCGCTGTCGAGATTGCCTTCCAGCA
CAAAAAAGGTGTTGAGGCCCCTCAGGCTAACAGAATGAATGATCGCTTTT
AGTCCGATGCAGTAGTAACGCTATCCAATGCCTCTCCTGCATTTGCTCCC
TGGCTTCTATCTGTATCGAGGACCTTAGGGAAGGCGCGCGGATTCTGCGG
CATATCGCACATATCACCTTCTGCACCGTGCAAGGCTGCATGCAGGTATT
ACCCCCTCTGCGGTATGCGCCCCGGCGAGGTGGGTGAAAGCTCTTGCCCA
AGCCTCTGTCTGTGCTTGGAAGCCACCTGCTGCTTCACATGCGCCGTGTC
GGCAACTCGAAATTACTTGATGGACAAGTACAGCATTCATCCGGACCCGA
TGGACTATCAGATCGCGGCTATGCGCGGTCGGACAATCCCTACACATTTC
AGGTGTCCATGGCCAAGACCTGCATTGCAGACCCGTGCTGCTGCCTAGCC
TCGTTGGTATGTCCCTTGCCTGTGGCGTGTATCAACCGGCACAGGGCGTT
GGAGGGGAAGATGGAAGAGTACAAATGTTGTCAAGGATGAGCATCTGCTT
TCTCTGTTTCCCCGACGACGTTATTCCACGCAAACCGCTGTCGAGATTGC
CTTCCAGCACAAAAAAGGTGTTGAGGCCCCTCAGGCTAACAGAATGAATG
ATCGCTTTTAGTCCGATGCAGTAGTAACGCTATCCAATGCCTCTCCTGCA
TTTGCTCCCTGGCTTCTATCTGTATCGAGGACCTTAGGGAAGGCGCGCGG
ATTCTGCGGCATATCGCACATATCACCTTCTGCACCGTGCAAGGCTGCAT
GCAGGTATTACCCCCTCTGCGGTATGCGCCCCGGCGAGGTGGGTGAAAGC
TCTTGCCCAAGCCTCTGTCTGTGCTTGGAAGCCACCTGCTGCTTCACATG
CGCCGTGTCGGCAACTCGAAATTACTTGATGGACAAGTACAGCATTCATC
CGGACCCGATGGACTATCAGATCGCGGCTATGCGCGGTCGGACAATCCCT
ACACATTTCAGGTGTCCATGGCCAAGACCTGCATTGCAGACCCGTGCTGC
TGCCTAGCCTCGTTGGTATGTCCCTTGCCTGTGGCGTGTATCAACCGGCA
CAGGGCGTTGGAGGGGAAGATGGAAGAGTACAAATGTTGTCAAGGATGAG
CATCTGCTTTCTCTGTTTCCCCGACGACGTTATTCCACGCAAACCGCTGT
CGAGATTGCCTTCCAGCACAAAAAAGGTGTTGAGGCCCCTCAGGCTAACA
GAATGAATGATCGCTTTTAGTCCGATGCAGTAGTAACGCTATCCAATGCC
TCTCCTGCATTTGCTCCCTGGCTTCTATCTGTATCGAGGACCTTAGGGAA
GGCGCGCGGATTCTGCGGCATATCGCACATATCACCTTCTGCACCGTGCA
AGGCTGCATGCAGGTATTACCCCCTCTGCGGTATGCGCCCCGGCGAGGTG
GGTGAAAGCTCTTGCCCAAGCCTCTGTCTGTGCTTGGAAGCCACCTGCTG
CTTCACATGCGCCGTGTCGGCAACTCGAAATTACTTGATGGACAAGTACA
GCATTCATCCGGACCCGATGGACTATCAGATCGCGGCTATGCGCGGTCGG
ACAATCCCTACACATTTCAGGTGTCCATGGCCAAGACCTGCATTGCAGAC
CCGTGCTGCTGCCTAGCCTCGTTGGTATGTCCCTTGCCTGTGGCGTGTAT
CAACCGGCACAGGGCGTTGGAGGGGAAGATGGAAGAGTACAAATGTTGTC
AAGGATGAGCATCTGCTTTCTCTGTTTCCCCGACGACGTTATTCC

Synonyms

Publications