jgi.p|Nanoce1779_2|594452, mRNA_6285 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|594452
Unique Name	mRNA_6285
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2851
Alignment location	scaffold_15:240041..242891 -

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Properties


Property Name	Value
TranscriptId	594538
Track	FilteredModels2
ProteinId	594452

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:240041..242891 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594452	gene_6285	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594452	mRNA_6285-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6285	CDS_6285	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:240041..242891-
coding sequence from alignment at scaffold_15:240041..242891-

mRNA sequence

>mRNA_6285 ID=mRNA_6285|Name=jgi.p|Nanoce1779_2|594452|organism=Nannochloropsis oceanica|type=mRNA|length=2851bp
TTGCTCGACTGCACACTTGAAAGTGTCATGCTTGTGCTTGCACCCACGAT
CTTGAGTGTATGATGGGAAAATAACACATCACCCACCCTACCTCCCCCAA
CACTCCTGCACAAGTATTCCACGGAATCGGCTTCGGGGGCCAGGTTTATT
TGGAACAACTGACCGTGGAACTGTAACAGAGGCCTTCAGATTAAAAGGCT
GAATTTTCCATACTCAATCCTCATCCTCCCCTTCTGCCGTCTCCTCATCT
CCAAGCCCAACACAAAGGCACCCACTTCAGCTTAGAAGAGGGGACACAAG
ACGACACGCATGCACTTACGACGCCAACTGCAACACAAACGAAGTACGTA
AATAGATTTGGAGGAAAAGGAAGGCTAGGGCCTGCGTGGTTGACACCACC
TGAGGCAATAGGGCTTGATCTCATCTATCCAGCACTCTTCCTTTCCCTCC
ACATGCGTACGCAACAACCACAGATTATTCTGAAATTTCGCAAAGAGACG
ACGTCAATAAAAAGCTTGTGATTGTCCTACTTGATTTAACAACGTCCCAC
GCGCCATCCATCACCATCTACCCTACCTAAATTACAACAAGTACAATCCT
GGAGAATATCCGCCTGCATTCGTCCGCCTGGTCCTTTCCGTCCCACTCTT
CCTCTTCTTCTTCTTCCTCTTCTTCCTCCTCCTTCTCCTCCTCCTCTTCC
TTGACTTGCGGTGGCAGCCTCTGTCACAGAGGCGTGACAAGTGTGGTAGG
GTGCGTGACCTATCCTGCCCTTTCCAGGAGCATCACCCGCACTCGCATCA
CCAGCACTAGCAGCGGTACCAACAGCAGCGGGTATACAGCCAAGGGCTCG
CCGCTGCTTCCTCGGGAGGCATGCGGTATCGCGTGTGATAAGGAGCCATG
GGTGCTGCTAGAGGAAGTACTTCGACCCCGATCCGGGTACCCGCCGCCCC
ACCAGTCCCAACGCGCAGCGATACTGAGGCGTCACTCATCTCTCTCTCGT
TCTGCCGCACCCGTCGCCATCCCCCCTACCCGCACGCACGCCATTAATGC
CTACCTAAATCAGAGAGAGAAGCAGGAGGGGAAAGACCCCGGTTTCTTCA
AGTTTGACTCAGAATTTCAAGAGGAACTCGATACCACCGTATGGGGGCGG
ACGATTTCGGGGGGAGTGTCGGGAGCAATCGCCATGGGCATCAATGTGGC
TGCCTTTATGTGGCTCCGCACGATCATGTCCTATCAACAAGCACATGGCA
CACCTTTGGCCAAGACAGTTGGCGTTCTTTACCGGCAGGGTGGCGTACGC
CGATTCTATCGTGGTTTGATCCCGGCCTTGATTCATGCCCCCGCCTCCCG
CTTTGGAGATACGGCCGGCAACGCCGGAATGCTGGCCTGGCTAGACCGGC
ATGCGGAGACCCAAAACTTGCCCATTGTCTTCAAGACGGCCGCAGGTTCT
GTGGCTTCGGCATTGTGGCGCATCGTGATCATGCCTTTGGACACGATCAT
CATCTGCCAGCAAGTGCAAGGAGACCCCGGCTGGTCCTCCCTCTACCGCA
AGCTGATTCGAAAGGGCCCGTCGGTGCTTTTCCAAGGCGCAGGGGCATCC
TTCTCTGCAAACGTATTGGGACATTTTCCTTGGTTTGCCATTTATAACCT
TTGTGAGTCCAAGCTCCCGGAGCCCTCCGATATGAAGTCCCGCCTGTTCC
GGAATGCCTTTATCGGTTTCGCGGCCAGTGTGGCCTCCGACATCCTCTCG
AATTCCTTGACAGTCATCAAGGTCTGCAAACAAGCAAGCGTGGAGCTCCT
GACCTATCGGCAGACGACGGAACAGATCTTGGCTACGGATGGAGTGAAAG
GATTGTTGGGTCGTGGATTAGGCCTGCGTTTGATGGCGAATGGCGTCCAA
GGTATGGCGTTCGGTGTGGTCTGGAAGTACTTGGACGATTGCATCTTCCG
TGGGCAATGTTAAGGGCAAAATAATAAAAAATAAAAGCCTTTTCTTGGGG
GGGAGGCTCAGAAGACGGATAGGCAGAGGGTGAAGAGGCAGGAAACTTGT
AGCTTTATGTATCAAGGGGAAGGTGGGGGGTGGACGGGAAAGGAAGTTCC
GAAATGTGTTTCAGGCGAAAAGAAAAGGACAACCGTGGAATGCGTGTACG
TGTGCGTGTGACCGTACTTGTAGAAGAAGCTTAAATCGAAACAACGCCAG
TGGCATAGAATAACAAGGAAGTCTTCACAGAAATCCACACCGCCCATAAG
AGAGCAATTTCACATGTCTGCAGCGTAATTATATGTGTCGACTGGAAGGA
AGGAAGTGGCGTTGTGCTTTATTCAAGCAGTAAGGCGTCATTGGCCGTGT
ATATATGATGGCGAATAGCCTCGCTTAATCAATTGAATCAATCCGAACAG
TGCGTTTTCGCATGGTTAAAAAGAGGCCGATACGTATGGTGGGCCCAAAA
TTGTACAGTGATTCCATAAGAACATGACGCCAGCCGCAAAACAAACGAAA
CGAAGAGGTCGGAAACCAAATGAATGACAGGGAAAAGGAAAGAAAGGAAA
CATCTTCCGGAGACACTGCTGCGAACACGAACAACATATGTAGGGGTAGA
AAATGAAAGAAGAGAAATTAAAAACCAACAGACAAAGAGAGCAACCAGGA
AGAGTCTATGCTGACGCATGTGTGCTCAACAAGAGGAGGCAAGTAAATCG
TCGAATTTCATCCAGCCACCCAGTCGTGCCAAGCAATCATATGGGAGGGT
CATCCAGTGCGTGTGCATTGTACATCCGTGAGTTTTCGTGGGGAACGGCG
AAGGCAAAAAAGAAGCAGACAAGGGTCTTAGGAAACTGATTTCAAAGCAC
A

protein sequence of jgi.p|Nanoce1779_2|594452

>mRNA_6285-protein ID=mRNA_6285-protein|Name=jgi.p|Nanoce1779_2|594452|organism=Nannochloropsis oceanica|type=polypeptide|length=260bp
MGINVAAFMWLRTIMSYQQAHGTPLAKTVGVLYRQGGVRRFYRGLIPALI
HAPASRFGDTAGNAGMLAWLDRHAETQNLPIVFKTAAGSVASALWRIVIM
PLDTIIICQQVQGDPGWSSLYRKLIRKGPSVLFQGAGASFSANVLGHFPW
FAIYNLCESKLPEPSDMKSRLFRNAFIGFAASVASDILSNSLTVIKVCKQ
ASVELLTYRQTTEQILATDGVKGLLGRGLGLRLMANGVQGMAFGVVWKYL
DDCIFRGQC*

mRNA from alignment at scaffold_15:240041..242891-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6285 ID=mRNA_6285|Name=jgi.p|Nanoce1779_2|594452|organism=Nannochloropsis oceanica|type=mRNA|length=2851bp|location=Sequence derived from alignment at scaffold_15:240041..242891- (Nannochloropsis oceanica)
TTGCTCGACTGCACACTTGAAAGTGTCATGCTTGTGCTTGCACCCACGAT
CTTGAGTGTATGATGGGAAAATAACACATCACCCACCCTACCTCCCCCAA
CACTCCTGCACAAGTATTCCACGGAATCGGCTTCGGGGGCCAGGTTTATT
TGGAACAACTGACCGTGGAACTGTAACAGAGGCCTTCAGATTAAAAGGCT
GAATTTTCCATACTCAATCCTCATCCTCCCCTTCTGCCGTCTCCTCATCT
CCAAGCCCAACACAAAGGCACCCACTTCAGCTTAGAAGAGGGGACACAAG
ACGACACGCATGCACTTACGACGCCAACTGCAACACAAACGAAGTACGTA
AATAGATTTGGAGGAAAAGGAAGGCTAGGGCCTGCGTGGTTGACACCACC
TGAGGCAATAGGGCTTGATCTCATCTATCCAGCACTCTTCCTTTCCCTCC
ACATGCGTACGCAACAACCACAGATTATTCTGAAATTTCGCAAAGAGACG
ACGTCAATAAAAAGCTTGTGATTGTCCTACTTGATTTAACAACGTCCCAC
GCGCCATCCATCACCATCTACCCTACCTAAATTACAACAAGTACAATCCT
GGAGAATATCCGCCTGCATTCGTCCGCCTGGTCCTTTCCGTCCCACTCTT
CCTCTTCTTCTTCTTCCTCTTCTTCCTCCTCCTTCTCCTCCTCCTCTTCC
TTGACTTGCGGTGGCAGCCTCTGTCACAGAGGCGTGACAAGTGTGGTAGG
GTGCGTGACCTATCCTGCCCTTTCCAGGAGCATCACCCGCACTCGCATCA
CCAGCACTAGCAGCGGTACCAACAGCAGCGGGTATACAGCCAAGGGCTCG
CCGCTGCTTCCTCGGGAGGCATGCGGTATCGCGTGTGATAAGGAGCCATG
GGTGCTGCTAGAGGAAGTACTTCGACCCCGATCCGGGTACCCGCCGCCCC
ACCAGTCCCAACGCGCAGCGATACTGAGGCGTCACTCATCTCTCTCTCGT
TCTGCCGCACCCGTCGCCATCCCCCCTACCCGCACGCACGCCATTAATGC
CTACCTAAATCAGAGAGAGAAGCAGGAGGGGAAAGACCCCGGTTTCTTCA
AGTTTGACTCAGAATTTCAAGAGGAACTCGATACCACCGTATGGGGGCGG
ACGATTTCGGGGGGAGTGTCGGGAGCAATCGCCATGGGCATCAATGTGGC
TGCCTTTATGTGGCTCCGCACGATCATGTCCTATCAACAAGCACATGGCA
CACCTTTGGCCAAGACAGTTGGCGTTCTTTACCGGCAGGGTGGCGTACGC
CGATTCTATCGTGGTTTGATCCCGGCCTTGATTCATGCCCCCGCCTCCCG
CTTTGGAGATACGGCCGGCAACGCCGGAATGCTGGCCTGGCTAGACCGGC
ATGCGGAGACCCAAAACTTGCCCATTGTCTTCAAGACGGCCGCAGGTTCT
GTGGCTTCGGCATTGTGGCGCATCGTGATCATGCCTTTGGACACGATCAT
CATCTGCCAGCAAGTGCAAGGAGACCCCGGCTGGTCCTCCCTCTACCGCA
AGCTGATTCGAAAGGGCCCGTCGGTGCTTTTCCAAGGCGCAGGGGCATCC
TTCTCTGCAAACGTATTGGGACATTTTCCTTGGTTTGCCATTTATAACCT
TTGTGAGTCCAAGCTCCCGGAGCCCTCCGATATGAAGTCCCGCCTGTTCC
GGAATGCCTTTATCGGTTTCGCGGCCAGTGTGGCCTCCGACATCCTCTCG
AATTCCTTGACAGTCATCAAGGTCTGCAAACAAGCAAGCGTGGAGCTCCT
GACCTATCGGCAGACGACGGAACAGATCTTGGCTACGGATGGAGTGAAAG
GATTGTTGGGTCGTGGATTAGGCCTGCGTTTGATGGCGAATGGCGTCCAA
GGTATGGCGTTCGGTGTGGTCTGGAAGTACTTGGACGATTGCATCTTCCG
TGGGCAATGTTAAGGGCAAAATAATAAAAAATAAAAGCCTTTTCTTGGGG
GGGAGGCTCAGAAGACGGATAGGCAGAGGGTGAAGAGGCAGGAAACTTGT
AGCTTTATGTATCAAGGGGAAGGTGGGGGGTGGACGGGAAAGGAAGTTCC
GAAATGTGTTTCAGGCGAAAAGAAAAGGACAACCGTGGAATGCGTGTACG
TGTGCGTGTGACCGTACTTGTAGAAGAAGCTTAAATCGAAACAACGCCAG
TGGCATAGAATAACAAGGAAGTCTTCACAGAAATCCACACCGCCCATAAG
AGAGCAATTTCACATGTCTGCAGCGTAATTATATGTGTCGACTGGAAGGA
AGGAAGTGGCGTTGTGCTTTATTCAAGCAGTAAGGCGTCATTGGCCGTGT
ATATATGATGGCGAATAGCCTCGCTTAATCAATTGAATCAATCCGAACAG
TGCGTTTTCGCATGGTTAAAAAGAGGCCGATACGTATGGTGGGCCCAAAA
TTGTACAGTGATTCCATAAGAACATGACGCCAGCCGCAAAACAAACGAAA
CGAAGAGGTCGGAAACCAAATGAATGACAGGGAAAAGGAAAGAAAGGAAA
CATCTTCCGGAGACACTGCTGCGAACACGAACAACATATGTAGGGGTAGA
AAATGAAAGAAGAGAAATTAAAAACCAACAGACAAAGAGAGCAACCAGGA
AGAGTCTATGCTGACGCATGTGTGCTCAACAAGAGGAGGCAAGTAAATCG
TCGAATTTCATCCAGCCACCCAGTCGTGCCAAGCAATCATATGGGAGGGT
CATCCAGTGCGTGTGCATTGTACATCCGTGAGTTTTCGTGGGGAACGGCG
AAGGCAAAAAAGAAGCAGACAAGGGTCTTAGGAAACTGATTTCAAAGCAC
A

Coding sequence (CDS) from alignment at scaffold_15:240041..242891-

>mRNA_6285 ID=mRNA_6285|Name=jgi.p|Nanoce1779_2|594452|organism=Nannochloropsis oceanica|type=CDS|length=780bp|location=Sequence derived from alignment at scaffold_15:240041..242891- (Nannochloropsis oceanica)
ATGGGCATCAATGTGGCTGCCTTTATGTGGCTCCGCACGATCATGTCCTA
TCAACAAGCACATGGCACACCTTTGGCCAAGACAGTTGGCGTTCTTTACC
GGCAGGGTGGCGTACGCCGATTCTATCGTGGTTTGATCCCGGCCTTGATT
CATGCCCCCGCCTCCCGCTTTGGAGATACGGCCGGCAACGCCGGAATGCT
GGCCTGGCTAGACCGGCATGCGGAGACCCAAAACTTGCCCATTGTCTTCA
AGACGGCCGCAGGTTCTGTGGCTTCGGCATTGTGGCGCATCGTGATCATG
CCTTTGGACACGATCATCATCTGCCAGCAAGTGCAAGGAGACCCCGGCTG
GTCCTCCCTCTACCGCAAGCTGATTCGAAAGGGCCCGTCGGTGCTTTTCC
AAGGCGCAGGGGCATCCTTCTCTGCAAACGTATTGGGACATTTTCCTTGG
TTTGCCATTTATAACCTTTGTGAGTCCAAGCTCCCGGAGCCCTCCGATAT
GAAGTCCCGCCTGTTCCGGAATGCCTTTATCGGTTTCGCGGCCAGTGTGG
CCTCCGACATCCTCTCGAATTCCTTGACAGTCATCAAGGTCTGCAAACAA
GCAAGCGTGGAGCTCCTGACCTATCGGCAGACGACGGAACAGATCTTGGC
TACGGATGGAGTGAAAGGATTGTTGGGTCGTGGATTAGGCCTGCGTTTGA
TGGCGAATGGCGTCCAAGGTATGGCGTTCGGTGTGGTCTGGAAGTACTTG
GACGATTGCATCTTCCGTGGGCAATGTTAA

Synonyms

Publications