jgi.p|Nanoce1779_2|594445, mRNA_6283 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|594445
Unique Name	mRNA_6283
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1944
Alignment location	scaffold_15:232600..236338 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	594531
Track	FilteredModels2
ProteinId	594445

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:232600..236338 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594445	gene_6283	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594445	mRNA_6283-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6283	CDS_6283	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:232600..236338+
coding sequence from alignment at scaffold_15:232600..236338+

mRNA sequence

>mRNA_6283 ID=mRNA_6283|Name=jgi.p|Nanoce1779_2|594445|organism=Nannochloropsis oceanica|type=mRNA|length=1944bp
GTTACTCCTGCTGCTGTCCCCACCGGCTCTTCTCCCGCCTCCCCCTGCCG
CTTCCCCCACCCGAAGGCATTAATCCACTTCCAGACCTCGTCACCAGGGG
AAATAGTTTCCCCAGTCAGGTACCGAATGGTGGCTGTGTGCGGGGTGCTG
TTCAGATCTCCGCACACGACCAGGCGCGGGGAGATGCCGTACTCCTCCTC
CGCCCGGGCCTGATGAGCTTCCATTTCCCTCAGAAGGGTGGCCATCTGCA
TCAGGCGGATGTGCTGTGCCTTGGGGTGATAGAATAAATGCGTGTTGCCC
ACCAGGAGGAGTGTGTCTCGTCCATCCCCGTCTACCGCATGAAGCCCCCT
CCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCA
CCTTGAGGCGCAGCAACACAATCTGTCCGACGGTTGTGAGTTTCTCCTGG
AGGATGGTACGGAGGGATGGGTAGCGGGCTTGAAGGGCCTGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGCGAGGGGGGTCACGAATGTGTATCGATAT
GGGAGAGGGTGGGAGGGAGGGAGGGAGGGAAGGAGGGAGGGGATACCTTG
AAGGGCGAGTCTTCCTTTTGAAAAGCCTCGCGCATGACAACCCGGTGGGT
AGCGAGGCACGACAGCCGTTCCGTCCTATAGAAGAATGCGGCTCCTTCCC
TTGTCCCTCCGCACTTGGAAAGGAAAAAAACCGCGAAGGCCCGAAGCCGA
GAGGATGGGAGAGAGAACGTCATGTCTGCATTATACGACAAGAGCTCTTT
CACGGTGAGGAGCGTCCGATATTCGGAGTGAAGATGGGAGGGATGCACAT
AGGGATACAGGTGCTTCTGTGACCAAGCAGAAGTCGCGTAGTTGTCGGCC
AGGATATTGTAAGACACGAGCCTTAACACCCTCTCCTCCCTCCTGGTCCG
CTCCAGGCGCTCCAGTGGAAGAGGCACCCGGAGGCGTGTCAGCCAAGGGG
TGAGGGAGGGAGAGGAGGGAGAAGTGACGGCCTTGCTGGTGTAGCAGGTG
ATGGTCCTCCCCCAGACGACTGCTTCCTCGTCCTCCCTTTCGTCTTGTCC
TTTTTCCTCCCCTCCTTTGGCCCCCTCCTCCCGTTGCGCTTGTTGCTGCG
GCTGATGTCGGTACGGCGTACACAGCACTCGCATCCGACAGCCCACGTGG
TGGAGGTGGTGGTGGGAGGAGGAGGAAGAGGAAGGAAGGGAGGGAGGGAG
GGAGGGGTAAACGACAGGAGTATCTGGGCCCGCCTCATCGGTGGGGTCGA
ATGGAGTCCATTTATCCTCCCTCTCCACCTGCCACCGATAGTTGACGCCG
TCTGCGAAGAGTGTACGGGCCAGGACGTTCACTGGGAAGCCAGCCATGAT
TAATTTGCTCGAAAATCGCAGCTCGGTGATGTGAGGTGGATTTACCCTCA
CTCGATACCTCAGCATATACCGCCGTCCTCCCTCCCCTTCCTCCTTCCCT
CCCTCCTCCCTTCCCTCCCACTCAGCCACGCCCTGTGCGCCCCGCAGGAC
CCAAAGCTCTCGCCCATCGGCCCATGCATCGGCTACACTCATCTCCTCCA
CGTTCAGCTCACTCGTTCCATCCAACAGCTTCATGTGCAGCTGCGCTTGC
ATCCCAATTACATTCTTCTTTCCTTGCTTCTTGCCACCCTTCCCTCCTTT
TCCTCCACCGCCGCCACCACTCCCCACCACCTTGGCCCCAAATCGCCGTA
ATGTCGCTCCTGCTGTCTCAGTCCGTGCACGACGAAGTTGACACAGCTTT
CCATCCACATCGAAGAAGGTCAGTTCGATCTCCGCCTCGTCTGCCACGTT
CCGGATGTGCAGCTGGTCCATGTGATTAGCCTGTCGCTCCACGCGGCCTT
GGTCCCCTTTTGGCTCCCGGTTTTGACGGGCGGACGGGAGCTTC

protein sequence of jgi.p|Nanoce1779_2|594445

>mRNA_6283-protein ID=mRNA_6283-protein|Name=jgi.p|Nanoce1779_2|594445|organism=Nannochloropsis oceanica|type=polypeptide|length=178bp
MKPPPSLPPSLPPSLPPSLLHLEAQQHNLSDGCEFLLEDGTEGWVAGLKG
LREGGREGGRERGGSRMCIDMGEGGREGGREGGRGYLEGRVFLLKSLAHD
NPVGSEARQPFRPIEECGSFPCPSALGKEKNREGPKPRGWERERHVCIIR
QELFHGEERPIFGVKMGGMHIGIQVLL*

mRNA from alignment at scaffold_15:232600..236338+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6283 ID=mRNA_6283|Name=jgi.p|Nanoce1779_2|594445|organism=Nannochloropsis oceanica|type=mRNA|length=3739bp|location=Sequence derived from alignment at scaffold_15:232600..236338+ (Nannochloropsis oceanica)
GTTACTCCTGCTGCTGTCCCCACCGGCTCTTCTCCCGCCTCCCCCTGCCG
CTTCCCCCACCCGAAGGCATTAATCCACTTCCAGACCTCGTCACCAGGGG
AAATAGTTTCCCCAGTCAGGTACCGAATGGTGGCTGTGTGCGGGGTGCTG
AGGGAGGGCGGGAAGGCGGGAGGGAGGGAGGGTGAGCGACAGCAATGCTC
TTCCGACCTCCAGCCTTCGTATCCTCCCATCTCTCCTTCCTTCTTTCCTT
CCCTCCCTCCCTCCCTCCCTACCTGTTCAGATCTCCGCACACGACCAGGC
GCGGGGAGATGCCGTACTCCTCCTCCGCCCGGGCCTGATGAGCTTCCATT
TCCCTCAGAAGGGTGGCCATCTAAAAGAGGAAGGAAGGGAGGGAGGGAGG
GAGGGAGGGAAAGTCACCCATTCATCCATCAAAAACAAAACACCACCCTC
CCTTCTCCTTCTCCCTTCCCTCCCTTCCTCTTTCCCTCCCTCTCTACCTG
CATCAGGCGGATGTGCTGTGCCTTGGGGTGATAGAATAAATGCGTGTTGC
CCACCAGGAGGAGTGTGTCTCGTCCATCCCCGTCTACCGCCTGTCAAGAA
ACGATGAAACGAGCCATCCGAATTCAATTTTGAATCCAATTTGATTCAAT
GAAGCCTTTTGCTCCCTCGGCCTGAGTCCTCTCTTCCTCGCTGCATCCCC
CCCGCGTATTCTCCATTCGACTTGAGGGGGGAAGCATAGGATTCATGAAG
CCCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCTTCACCTTGAGGCGCAGCAACACAATCTGTCCGACGGTTGTGAGTTTC
TCCTGGAGGATGGTACGGAGGGATGGGTAGCGGGCTTGAAGGGCCTGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGCGAGGGGGGTCACGAATGTGTAT
CGATATGGGAGAGGGTGGGAGGGAGGGAGGGAGGGAAGGAGGGAGGGGAT
ACCTTGAAGGGCGAGTCTTCCTTTTGAAAAGCCTCGCGCATGACAACCCG
GTGGGTAGCGAGGCACGACAGCCGTTCCGTCCTATAGAAGAATGCGGCTC
CTTCCCTTGTCCCTCCGCACTTGGAAAGGAAAAAAACCGCGAAGGCCCGA
AGCCGAGAGGATGGGAGAGAGAACGTCTCGAAAGACGCGCTCGTCCACCT
GAGGGAGGGAGGGAGATCAAATTGAATGGGATGGTACTTAAGAAAGAGGG
GAAAGAAAAGCGAGGAGGGAGGGAGGAAGGAAGGAAGGAAGGGAGGGAGA
GAGGAAGGGAGTACACACGCCTACCTCTTGCAAGCAGGTCATGTCTGCAT
TATACGACAAGAGCTCTTTCACGGTGAGGAGCGTCCGATATTCGGAGTGA
AGATGGGAGGGATGCACATAGGGATACAGGTGCTTCTGTGACCAAGCAGA
AGTCGCGTAGCTAGGGAAGAAGAGGAGGGAGGGAGGGAGGAAGGGAGGAG
TGAATGGACATGGGGCTTCAGCCGCTTGAACATCTAGGTCAAGATATCAT
GCATGAAGTGGGGGAGATAACCCACTGTGATGAGACCGCTGGCGGGACGG
CGCCATGTATGCGTCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCTCCCAGGACGAACTTGTCGGCCAGGATATTG
TAAGACACGAGCCTTAACACCCTCTCCTCCCTCCTGGTCCGCTCCAGGCG
CTCCTGGGTTGATATATTCAGAAGACGGATGTATAGGTGAATATAAACTA
AGCTATATCCGGCCCAAACCAATCACAAACTTCTGCAAGTAACAAGGACC
TCATGCTTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCACCCATCCGT
ACCAGTGGAAGAGGCACCCGGAGGCGTGTCAGCCAAGGGGTGAGGGAGGG
AGAGGAGGGAGAAGTGACGGCCTTGCTGGTGTAGCAGGTGATGGTCCTCC
CCCTAACCGAAGGAGGGAGGAGGGAAGGGAGGGAGGGAGGGAGGGATCGG
TGAGGGGGAGGGAGGAATGGAGCAGGCAGCGGTCTTGCCGCGAAAGGCGG
GAAATAAATGAGGAGGGAGTGGCGAGTGTGGAGGGAAGAAGGAAGGAAAG
AAGGGAGGGATGGCTCGAAACGGATCGTGATGGGCCCGCAATGACGTGGC
TTGCTTACGCACCAGACGACTGCTTCCTCGTCCTCCCTTTCGTCTTGTCC
TTTTTCCTCCCCTCCTTTGGCCCCCTCCTCCCGTTGCGCTTGTTGCTGCG
GCTGATGTCGGTACGGCGTACACAGCACTCGCATCCGACAGCCCACGTGG
TGGAGGTGGTGGTGGGAGGAGGAGGAAGAGGAAGGAAGGGAGGGAGGGAG
GGAGGGGTAAACGACAGGAGTATCTGGGCCCGCCTCATCGGTGGGGTCGA
ATGGAGTCCATCTAGAGAGAACCAAAGAGGAAAGGTAAGAAGGAGGGAGG
ATAAGGAAGGAGGGAGGGAGGGAGGAAGGGAGAGTGGTTGGGGAATGAGT
ACCACAGGACAGGTATGGCCTGTGCTCCCTCCCTCCCTCCCCCCCTCCCT
CCCTCCCCCCCCTCCCTCTTACTTACTTATCCTCCCTCTCCACCTGCCAC
CGATAGTTGACGCCGTCTGCGAAGAGTGTACGGGCCAGGACGTTCACTGG
GAAGCCAGCCATGATTAATCTGGTGAATAACAAGTGAGGGAGGGAGGGAG
GGGGAGTGAATCGACTGAACATGTGACATCCCTCCCTCCCTCCCTCCCTT
CCTCCCCTCCTACCCTCCTTACTTGCTCGAAAATCGCAGCTCGGTGATGT
GAGGTGGATTTACCCTCACTCGATACCTCAGCATATACCGCCGTCCTCCC
TCCCCTTCCTCCTTCCCTCCCTCCTCCCTTCCCTCCCACTCAGCCACGCC
CTGTGCGCCCCGCAGGACCCAAAGCTCTCGCCCATCGGCCCATGCATCGG
CTACACTCATCTCCTCCACGTTCAGCTCACTCGTTCCATCCAACAGCTTC
ATGTGCAGCTGCAGGGGACCGAGGGAGGGAGGAAAGGGAGGGAGGGAGGG
AGGGAGGGAGGGCGGGACAGATCGTGAACTTTAATATTACCTGGCACCAA
GCCCTAATCAACGAGTTGAAATTCAAATGGCCATGATGCATAATACAAGC
TCCCCACCTCTAAATTGTCATTTTCCCCTCCATCCCTCCTTCCCTTCCTC
CTTCTCTCCCTCTTTCCCTACCTGCGCTTGCATCCCAATTACATTCTTCT
TTCCTTGCTTCTTGCCACCCTTCCCTCCTTTTCCTCCACCGCCGCCACCA
CTCCCCACCACCTTGGCCCCAAATCGCCGTAATGTCGCTCCTGCTGTCTC
AGTCCGTGCACGACGAAGTTGACACAGCTGTTGTTGTGAAAAAATAGGAA
TGCAAGAGAGGGAGAGAGGGAGGAAGGGAGAGAGGGAACATGGTGAGTAG
AATACCGGTGGTAAGCGTTAATGCCATGAATGTTCCTCGTTGATCTTGAA
GCTGGGGACTTTTCGGCACCCCTTTCTCTGCTGCCTCGTACCTTTCCATC
CACATCGAAGAAGGTCAGTTCGATCTCCGCCTCGTCTGCCACGTTCCGGA
TGTGCAGCTGGTCCATGTGATTAGCCTGTCGCTCCACGCGGCCTTGGTCC
CCTTTTGGCTCCCGGTTTTGACGGGCGGACGGGAGCTTC

Coding sequence (CDS) from alignment at scaffold_15:232600..236338+

>mRNA_6283 ID=mRNA_6283|Name=jgi.p|Nanoce1779_2|594445|organism=Nannochloropsis oceanica|type=CDS|length=1068bp|location=Sequence derived from alignment at scaffold_15:232600..236338+ (Nannochloropsis oceanica)
ATGAAGCCCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCTTCACCTTGAGGCGCAGCAACACAATCTGTCCGACGGTTGTG
AGTTTCTCCTGGAGGATGGTACGGAGGGATGGGTAGCGGGCTTGAAGGGC
CTGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGCGAGGGGGGTCACGAAT
GTGTATCGATATGGGAGAGGGTGGGAGGGAGGGAGGGAGGGAAGGAGGGA
GGGGATACCTTGAAGGGCGAGTCTTCCTTTTGAAAAGCCTCGCGCATGAC
AACCCGGTGGGTAGCGAGGCACGACAGCCGTTCCGTCCTATAGAAGAATG
CGGCTCCTTCCCTTGTCCCTCCGCACTTGGAAAGGAAAAAAACCGCGAAG
GCCCGAAGCCGAGAGGATGGGAGAGAGAACGTCATGTCTGCATTATACGA
CAAGAGCTCTTTCACGGTGAGGAGCGTCCGATATTCGGAGTGAAGATGGG
AGGGATGCACATAGGGATACAGGTGCTTCTGTGAATGAAGCCCCCTCCTT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCACCTT
GAGGCGCAGCAACACAATCTGTCCGACGGTTGTGAGTTTCTCCTGGAGGA
TGGTACGGAGGGATGGGTAGCGGGCTTGAAGGGCCTGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGCGAGGGGGGTCACGAATGTGTATCGATATGGGA
GAGGGTGGGAGGGAGGGAGGGAGGGAAGGAGGGAGGGGATACCTTGAAGG
GCGAGTCTTCCTTTTGAAAAGCCTCGCGCATGACAACCCGGTGGGTAGCG
AGGCACGACAGCCGTTCCGTCCTATAGAAGAATGCGGCTCCTTCCCTTGT
CCCTCCGCACTTGGAAAGGAAAAAAACCGCGAAGGCCCGAAGCCGAGAGG
ATGGGAGAGAGAACGTCATGTCTGCATTATACGACAAGAGCTCTTTCACG
GTGAGGAGCGTCCGATATTCGGAGTGAAGATGGGAGGGATGCACATAGGG
ATACAGGTGCTTCTGTGA

Synonyms

Publications