jgi.p|Nanoce1779_2|594440, mRNA_6282 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|594440
Unique Name	mRNA_6282
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2447
Alignment location	scaffold_15:228246..230692 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	594526
Track	FilteredModels2
ProteinId	594440

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:228246..230692 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594440	gene_6282	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|594440	mRNA_6282-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6282	CDS_6282	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:228246..230692+
coding sequence from alignment at scaffold_15:228246..230692+

mRNA sequence

>mRNA_6282 ID=mRNA_6282|Name=jgi.p|Nanoce1779_2|594440|organism=Nannochloropsis oceanica|type=mRNA|length=2447bp
GGAGGGCGGGGCGGGCGAATCAGGTAGGTGGGCAAGGCGGAGGGAGGGAG
GGAAAGGGACAATCTGCTCGTGTGTTTGCGTTGTGCCAATCGATATTGTC
CCTCCCCGACACTCACCGCCTCTTCCCTCCTCTATTTCTCCCTTCTTCAC
TCCCTCTCACCCATCCTCTCTTCCTCCCTCTTTAGCTCTTCACCAAGATG
GTCATTGAGATCTGCGCCCACGCAGGGGAATGGAAGACTGCCGGGTATCT
TTTGATCGAAATGAGGCGGGAAGGCCAGTTGCCCGATGCGACGTCGTATG
CCGTTGCCATGCGGGCCTGTCTGGAGGCGGGTGAGAAAGGACGGACGTTG
GGATTGTGGGAGGAGATGAAGGAGGGAGGGGTGGAGCCCAGTAAGGAGGC
GTGTGCTCTTGCCATGTCCGCGGCATTGGATTTAAGGGACTGGAATAGGG
TGGATGCTATGGTGGAGGAGTTGGTGGAGGGAGGACGGGAAGGAGGGGGG
GGCAACCAGAATCAACGTTTCTTTCTGGAGATGATGGGCAGTTTTGTGGC
GGGCGGACGGTGGCGAAGTGCCTTGCACTTGTTGCGGGTTTTAGGGGGGG
GGGAAGGAAGGGAAGGAGGGAAGGAAGGGGAGAGTAGCGCGAGTCATCAG
TTGTCGGCAGGATTTTATGAACAGGCCGTGCAGGCATGTGCGGTGGCGGG
TGAGACAGAGCGGGCGGTGAAGACCCTTGATGAGATGGGAAGGATGGGGT
TTCAACCGTCGACGTTTATCTACAACGTAGCCATGGAGGCCTGCACTAAG
GCGGGAGACCTCCCGGGAGTGCTGGGCTTGAAACGTCGGATGCGAACGGC
CAAGGTGGAATTTGACGTCGTTACGTGCAATACGTTATTGAACGCCTTTG
CCATTTGTGGGAAGTGGGATGAAGCCCTATCTTTCCTCCAGCGCATGCCG
TCCCAGTACGGGGTTCGACCGAATCTAGTGAGTTGTAACACGGCGCTCAA
GGCGTGTGTGACGGGCCGTCGATGGCGCGAAGCCGTCGTGCTCCTTAATA
GCATGCAGGCCCAAAACCTCGCTCCTGACGCCGTTTCGTACCGCACGGCT
ATGAACGCCTGCATCGAAGGGGGAGAAGCCAACCGGGCTTTGAAGATCTT
TGACCGCATGCGCGAGGACGGCCTTCCTTGGGACGTGCCCACTTATAATG
TGGCGCTGAAAGCCTGCGCAGAGAGCCACCAACCGGAGATGGCTTGGGAG
CTCTTCCAGCAGATGCAGAGCGCGGGGTTACCGGCCGAAGTGAGGACATA
CACGACGTTAATGAATGGCTGGGTTGAGGCAGGGGAGTGCCACCGCGCAA
TCCAGGCGTTCCGGGAGATGAGGGCGGCGGGGCTGCAGCCGGATGTGTAC
GCATTGACGGTGGGAATCAAGGCTTGTGGCGTGTGTGGTCTGGTAACGCA
GGCGTTGGAGTTTGTGGAGGAAACATTGGCGTTACGCCCGCGGGTGAACC
TGGATCCAATCACCTTTAATCTTGCCATGCAAGTCTGTGAAGAGCAAGGG
ACAGGGCAGGAAGCACTGGAGGTGTTTGAGCGGATGCAGGCAGAGGCCGG
CGTGGACCCGAATTGGATCACCTACACTATTGTTTTGAGGGTGTTGACGG
ACGAGGGACGGTGGGAGGATGTCTCGGCGCTGCTTTCCACCATAGAGGGG
CGCCTTACTGCTACCTCCTCCTCCTCCTCCTCTTCTTCTTCCTCTTCGTC
TTCCCCTTCCTCGTTGGCAGCGGTCGCATCAGCAGCAGCGACCGCAGCCA
CAGCAGTCGCCGCCGCCGAAGCCGGAACAGTCACAGCAGCAGTAGCAGGT
CCAGCCGCTATTGCCTCTCCTTCCCTGCAGCACCACCCATCGTCGGACTC
CTTCTTTTCTGAGGCCATGCGCCGGGCGGTGTCTATGGCGGAATGGGACG
TCGTGGCTCACATTTTCCACCTCGCCGTTCTGAGTGGGGCCATAGCCCCT
CCTCCTTCCTCAATACTACCGCCAGCTGCTGAGGCTGAGCCAACTGCTAG
TGAGGATGGTATTGCAGCTGCTGCTGGTGGTGGTGGTGGTGGGGCTGCTG
CCAGCACAGGGAGCAGAAAGCTGGACAAATATTTGTATGGGGGGGCTGTA
GCCGCTGCGAAGGAGAGAGGGGACGTAGAGGAGGTGGAGAGGCTGATCAC
GGGGCTGTGCGAGGCATTAAGCGGGACGGAGGGAGGAAAGGAGGGCGTGA
GAGAGGAGTACTTGCACACGGTGGAAGATTGTGTGCGGAGTGGAGACTGG
TTCCCACTGTTGGAATACTACGGGCCAAGTTTGCGAGGGAGGGGGGGAGG
CTACAGTGCATGGCAGCAAGCGCAACAGATGGAGCAGCAGAGAAGAGGGG
GAGAGAGGGATCACAGGAGAAGAGGGAGGAGATGATTGTAGAGAGGG

protein sequence of jgi.p|Nanoce1779_2|594440

>mRNA_6282-protein ID=mRNA_6282-protein|Name=jgi.p|Nanoce1779_2|594440|organism=Nannochloropsis oceanica|type=polypeptide|length=746bp
MVIEICAHAGEWKTAGYLLIEMRREGQLPDATSYAVAMRACLEAGEKGRT
LGLWEEMKEGGVEPSKEACALAMSAALDLRDWNRVDAMVEELVEGGREGG
GGNQNQRFFLEMMGSFVAGGRWRSALHLLRVLGGGEGREGGKEGESSASH
QLSAGFYEQAVQACAVAGETERAVKTLDEMGRMGFQPSTFIYNVAMEACT
KAGDLPGVLGLKRRMRTAKVEFDVVTCNTLLNAFAICGKWDEALSFLQRM
PSQYGVRPNLVSCNTALKACVTGRRWREAVVLLNSMQAQNLAPDAVSYRT
AMNACIEGGEANRALKIFDRMREDGLPWDVPTYNVALKACAESHQPEMAW
ELFQQMQSAGLPAEVRTYTTLMNGWVEAGECHRAIQAFREMRAAGLQPDV
YALTVGIKACGVCGLVTQALEFVEETLALRPRVNLDPITFNLAMQVCEEQ
GTGQEALEVFERMQAEAGVDPNWITYTIVLRVLTDEGRWEDVSALLSTIE
GRLTATSSSSSSSSSSSSSPSSLAAVASAAATAATAVAAAEAGTVTAAVA
GPAAIASPSLQHHPSSDSFFSEAMRRAVSMAEWDVVAHIFHLAVLSGAIA
PPPSSILPPAAEAEPTASEDGIAAAAGGGGGGAAASTGSRKLDKYLYGGA
VAAAKERGDVEEVERLITGLCEALSGTEGGKEGVREEYLHTVEDCVRSGD
WFPLLEYYGPSLRGRGGGYSAWQQAQQMEQQRRGGERDHRRRGRR*

mRNA from alignment at scaffold_15:228246..230692+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6282 ID=mRNA_6282|Name=jgi.p|Nanoce1779_2|594440|organism=Nannochloropsis oceanica|type=mRNA|length=2447bp|location=Sequence derived from alignment at scaffold_15:228246..230692+ (Nannochloropsis oceanica)
GGAGGGCGGGGCGGGCGAATCAGGTAGGTGGGCAAGGCGGAGGGAGGGAG
GGAAAGGGACAATCTGCTCGTGTGTTTGCGTTGTGCCAATCGATATTGTC
CCTCCCCGACACTCACCGCCTCTTCCCTCCTCTATTTCTCCCTTCTTCAC
TCCCTCTCACCCATCCTCTCTTCCTCCCTCTTTAGCTCTTCACCAAGATG
GTCATTGAGATCTGCGCCCACGCAGGGGAATGGAAGACTGCCGGGTATCT
TTTGATCGAAATGAGGCGGGAAGGCCAGTTGCCCGATGCGACGTCGTATG
CCGTTGCCATGCGGGCCTGTCTGGAGGCGGGTGAGAAAGGACGGACGTTG
GGATTGTGGGAGGAGATGAAGGAGGGAGGGGTGGAGCCCAGTAAGGAGGC
GTGTGCTCTTGCCATGTCCGCGGCATTGGATTTAAGGGACTGGAATAGGG
TGGATGCTATGGTGGAGGAGTTGGTGGAGGGAGGACGGGAAGGAGGGGGG
GGCAACCAGAATCAACGTTTCTTTCTGGAGATGATGGGCAGTTTTGTGGC
GGGCGGACGGTGGCGAAGTGCCTTGCACTTGTTGCGGGTTTTAGGGGGGG
GGGAAGGAAGGGAAGGAGGGAAGGAAGGGGAGAGTAGCGCGAGTCATCAG
TTGTCGGCAGGATTTTATGAACAGGCCGTGCAGGCATGTGCGGTGGCGGG
TGAGACAGAGCGGGCGGTGAAGACCCTTGATGAGATGGGAAGGATGGGGT
TTCAACCGTCGACGTTTATCTACAACGTAGCCATGGAGGCCTGCACTAAG
GCGGGAGACCTCCCGGGAGTGCTGGGCTTGAAACGTCGGATGCGAACGGC
CAAGGTGGAATTTGACGTCGTTACGTGCAATACGTTATTGAACGCCTTTG
CCATTTGTGGGAAGTGGGATGAAGCCCTATCTTTCCTCCAGCGCATGCCG
TCCCAGTACGGGGTTCGACCGAATCTAGTGAGTTGTAACACGGCGCTCAA
GGCGTGTGTGACGGGCCGTCGATGGCGCGAAGCCGTCGTGCTCCTTAATA
GCATGCAGGCCCAAAACCTCGCTCCTGACGCCGTTTCGTACCGCACGGCT
ATGAACGCCTGCATCGAAGGGGGAGAAGCCAACCGGGCTTTGAAGATCTT
TGACCGCATGCGCGAGGACGGCCTTCCTTGGGACGTGCCCACTTATAATG
TGGCGCTGAAAGCCTGCGCAGAGAGCCACCAACCGGAGATGGCTTGGGAG
CTCTTCCAGCAGATGCAGAGCGCGGGGTTACCGGCCGAAGTGAGGACATA
CACGACGTTAATGAATGGCTGGGTTGAGGCAGGGGAGTGCCACCGCGCAA
TCCAGGCGTTCCGGGAGATGAGGGCGGCGGGGCTGCAGCCGGATGTGTAC
GCATTGACGGTGGGAATCAAGGCTTGTGGCGTGTGTGGTCTGGTAACGCA
GGCGTTGGAGTTTGTGGAGGAAACATTGGCGTTACGCCCGCGGGTGAACC
TGGATCCAATCACCTTTAATCTTGCCATGCAAGTCTGTGAAGAGCAAGGG
ACAGGGCAGGAAGCACTGGAGGTGTTTGAGCGGATGCAGGCAGAGGCCGG
CGTGGACCCGAATTGGATCACCTACACTATTGTTTTGAGGGTGTTGACGG
ACGAGGGACGGTGGGAGGATGTCTCGGCGCTGCTTTCCACCATAGAGGGG
CGCCTTACTGCTACCTCCTCCTCCTCCTCCTCTTCTTCTTCCTCTTCGTC
TTCCCCTTCCTCGTTGGCAGCGGTCGCATCAGCAGCAGCGACCGCAGCCA
CAGCAGTCGCCGCCGCCGAAGCCGGAACAGTCACAGCAGCAGTAGCAGGT
CCAGCCGCTATTGCCTCTCCTTCCCTGCAGCACCACCCATCGTCGGACTC
CTTCTTTTCTGAGGCCATGCGCCGGGCGGTGTCTATGGCGGAATGGGACG
TCGTGGCTCACATTTTCCACCTCGCCGTTCTGAGTGGGGCCATAGCCCCT
CCTCCTTCCTCAATACTACCGCCAGCTGCTGAGGCTGAGCCAACTGCTAG
TGAGGATGGTATTGCAGCTGCTGCTGGTGGTGGTGGTGGTGGGGCTGCTG
CCAGCACAGGGAGCAGAAAGCTGGACAAATATTTGTATGGGGGGGCTGTA
GCCGCTGCGAAGGAGAGAGGGGACGTAGAGGAGGTGGAGAGGCTGATCAC
GGGGCTGTGCGAGGCATTAAGCGGGACGGAGGGAGGAAAGGAGGGCGTGA
GAGAGGAGTACTTGCACACGGTGGAAGATTGTGTGCGGAGTGGAGACTGG
TTCCCACTGTTGGAATACTACGGGCCAAGTTTGCGAGGGAGGGGGGGAGG
CTACAGTGCATGGCAGCAAGCGCAACAGATGGAGCAGCAGAGAAGAGGGG
GAGAGAGGGATCACAGGAGAAGAGGGAGGAGATGATTGTAGAGAGGG

Coding sequence (CDS) from alignment at scaffold_15:228246..230692+

>mRNA_6282 ID=mRNA_6282|Name=jgi.p|Nanoce1779_2|594440|organism=Nannochloropsis oceanica|type=CDS|length=2238bp|location=Sequence derived from alignment at scaffold_15:228246..230692+ (Nannochloropsis oceanica)
ATGGTCATTGAGATCTGCGCCCACGCAGGGGAATGGAAGACTGCCGGGTA
TCTTTTGATCGAAATGAGGCGGGAAGGCCAGTTGCCCGATGCGACGTCGT
ATGCCGTTGCCATGCGGGCCTGTCTGGAGGCGGGTGAGAAAGGACGGACG
TTGGGATTGTGGGAGGAGATGAAGGAGGGAGGGGTGGAGCCCAGTAAGGA
GGCGTGTGCTCTTGCCATGTCCGCGGCATTGGATTTAAGGGACTGGAATA
GGGTGGATGCTATGGTGGAGGAGTTGGTGGAGGGAGGACGGGAAGGAGGG
GGGGGCAACCAGAATCAACGTTTCTTTCTGGAGATGATGGGCAGTTTTGT
GGCGGGCGGACGGTGGCGAAGTGCCTTGCACTTGTTGCGGGTTTTAGGGG
GGGGGGAAGGAAGGGAAGGAGGGAAGGAAGGGGAGAGTAGCGCGAGTCAT
CAGTTGTCGGCAGGATTTTATGAACAGGCCGTGCAGGCATGTGCGGTGGC
GGGTGAGACAGAGCGGGCGGTGAAGACCCTTGATGAGATGGGAAGGATGG
GGTTTCAACCGTCGACGTTTATCTACAACGTAGCCATGGAGGCCTGCACT
AAGGCGGGAGACCTCCCGGGAGTGCTGGGCTTGAAACGTCGGATGCGAAC
GGCCAAGGTGGAATTTGACGTCGTTACGTGCAATACGTTATTGAACGCCT
TTGCCATTTGTGGGAAGTGGGATGAAGCCCTATCTTTCCTCCAGCGCATG
CCGTCCCAGTACGGGGTTCGACCGAATCTAGTGAGTTGTAACACGGCGCT
CAAGGCGTGTGTGACGGGCCGTCGATGGCGCGAAGCCGTCGTGCTCCTTA
ATAGCATGCAGGCCCAAAACCTCGCTCCTGACGCCGTTTCGTACCGCACG
GCTATGAACGCCTGCATCGAAGGGGGAGAAGCCAACCGGGCTTTGAAGAT
CTTTGACCGCATGCGCGAGGACGGCCTTCCTTGGGACGTGCCCACTTATA
ATGTGGCGCTGAAAGCCTGCGCAGAGAGCCACCAACCGGAGATGGCTTGG
GAGCTCTTCCAGCAGATGCAGAGCGCGGGGTTACCGGCCGAAGTGAGGAC
ATACACGACGTTAATGAATGGCTGGGTTGAGGCAGGGGAGTGCCACCGCG
CAATCCAGGCGTTCCGGGAGATGAGGGCGGCGGGGCTGCAGCCGGATGTG
TACGCATTGACGGTGGGAATCAAGGCTTGTGGCGTGTGTGGTCTGGTAAC
GCAGGCGTTGGAGTTTGTGGAGGAAACATTGGCGTTACGCCCGCGGGTGA
ACCTGGATCCAATCACCTTTAATCTTGCCATGCAAGTCTGTGAAGAGCAA
GGGACAGGGCAGGAAGCACTGGAGGTGTTTGAGCGGATGCAGGCAGAGGC
CGGCGTGGACCCGAATTGGATCACCTACACTATTGTTTTGAGGGTGTTGA
CGGACGAGGGACGGTGGGAGGATGTCTCGGCGCTGCTTTCCACCATAGAG
GGGCGCCTTACTGCTACCTCCTCCTCCTCCTCCTCTTCTTCTTCCTCTTC
GTCTTCCCCTTCCTCGTTGGCAGCGGTCGCATCAGCAGCAGCGACCGCAG
CCACAGCAGTCGCCGCCGCCGAAGCCGGAACAGTCACAGCAGCAGTAGCA
GGTCCAGCCGCTATTGCCTCTCCTTCCCTGCAGCACCACCCATCGTCGGA
CTCCTTCTTTTCTGAGGCCATGCGCCGGGCGGTGTCTATGGCGGAATGGG
ACGTCGTGGCTCACATTTTCCACCTCGCCGTTCTGAGTGGGGCCATAGCC
CCTCCTCCTTCCTCAATACTACCGCCAGCTGCTGAGGCTGAGCCAACTGC
TAGTGAGGATGGTATTGCAGCTGCTGCTGGTGGTGGTGGTGGTGGGGCTG
CTGCCAGCACAGGGAGCAGAAAGCTGGACAAATATTTGTATGGGGGGGCT
GTAGCCGCTGCGAAGGAGAGAGGGGACGTAGAGGAGGTGGAGAGGCTGAT
CACGGGGCTGTGCGAGGCATTAAGCGGGACGGAGGGAGGAAAGGAGGGCG
TGAGAGAGGAGTACTTGCACACGGTGGAAGATTGTGTGCGGAGTGGAGAC
TGGTTCCCACTGTTGGAATACTACGGGCCAAGTTTGCGAGGGAGGGGGGG
AGGCTACAGTGCATGGCAGCAAGCGCAACAGATGGAGCAGCAGAGAAGAG
GGGGAGAGAGGGATCACAGGAGAAGAGGGAGGAGATGA

Synonyms

Publications