jgi.p|Nanoce1779_2|138043, mRNA_628 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|138043
Unique NamemRNA_628
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1266
Alignment locationscaffold_2:46902..48943 -

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Properties
Property NameValue
TranscriptId138129
TrackFilteredModels2
ProteinId138043
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:46902..48943 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|138043gene_628Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|138043mRNA_628-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_628CDS_628Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_628 ID=mRNA_628|Name=jgi.p|Nanoce1779_2|138043|organism=Nannochloropsis oceanica|type=mRNA|length=1266bp
AAATATTTTGCGAAATTGCGCGAACTGAGAGAGAGGGGGTACTCTGGTGC
CTATTACATGGACGGCACGAGGACGAGGACGAGGACGTGATGGACGAAAG
CGAGGATGAGGAACACGACTATGATGACCAAGGTAGAGGGTGTTTGAGAG
GGAGTGATCGGAGTGTGCGGAACACGAGCACTAGGAAACGGGGGACGAAG
CGTCGCCGAGTGGCCGGGGGAGGGGAGGAAGAAGGCAGCATCCCGGCCGT
TTCGGGTAACGGTCGGCGACGAGGTGGAAGGCGGGCAGACTCTCCTACCT
CTCCCTCCGCATCTTCCTCTATCTCCTTGCCACGCGGAACGGCAGCAACG
ACAGCAGCAGCGTCGGCAGCGGCAGCAGCAGCAGCAGCAGCAGCAGCGGC
CGCAGTAGGGGGAGCAGGTCCCGCGGACAAAGGGAGAAATGGTGGGAAAA
AGGGAAGGCGGAAGGGGGCCTTGCTGTCACAGAATACAGAGATGGAGGCC
GCCAAGTCTCTGATGAGCATCATTGCCGCGGCGGAAGAGGACGAGGATGA
TGAAGGGGGGGAGGGGGGGAAGGAGGGAGGGGCGGACAGGAAAGACTGTG
GGCCGACCCGACGAGAGGAGGGAGAGAAGGAGGGAGAGGTGGCATCGGTA
GTTTCTGAGGCTGAGGGAGACGGGGGAATGGTGTCGTCCCCGATGGGGGA
GGACATGTTCGTTCCTCCTCCTTTGTTGAATGGAGAGGAGGTTGAGATTG
CTGTGTGTGCCATATCTCAGGTTTCGCCTCCCTTGGTCCAGCAGCAGCAG
CAGCAGCAGCAGCAGCTGCAGTCTTCATTGGATTCGCCTCCTGCGGTGCA
ACAGCAGCAACCGCAACAGCAACAGAGAAGGAAGATATTTTTAGGTATTG
AAAGCGTTGGTGGAGGACTCTTTGTGTGGTTTGGTGTATGTGATGGAGTG
ATAGGGGCCGAGAAAGGCACAGGCAAGGGCTAGATCGAGGGCGATGAGTG
AGAGGGGGGAAGCGAATCAGAAAGAAAGCGAAAAAAGGCAGATGCATCAA
TGATCGAAGGGCACGAGAAGGAGAGAATAACACAGGACAAACACGAGGAA
GAGAAGAAAACGATAATAAAAAAGAAGGGAAAGACGCACAAGAAGCAGTT
CAAACTGAGCAACAAGCAGAACAAGAAGCAGAACGAAGACACCATCACCG
CCATCACAAACAACTTGAGCAACAAGAAAGAAAGACATACATATACCTTG
AAAGATATGCAGATGT
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protein sequence of jgi.p|Nanoce1779_2|138043

>mRNA_628-protein ID=mRNA_628-protein|Name=jgi.p|Nanoce1779_2|138043|organism=Nannochloropsis oceanica|type=polypeptide|length=298bp
MDESEDEEHDYDDQGRGCLRGSDRSVRNTSTRKRGTKRRRVAGGGEEEGS
IPAVSGNGRRRGGRRADSPTSPSASSSISLPRGTAATTAAASAAAAAAAA
AAAAAVGGAGPADKGRNGGKKGRRKGALLSQNTEMEAAKSLMSIIAAAEE
DEDDEGGEGGKEGGADRKDCGPTRREEGEKEGEVASVVSEAEGDGGMVSS
PMGEDMFVPPPLLNGEEVEIAVCAISQVSPPLVQQQQQQQQQLQSSLDSP
PAVQQQQPQQQQRRKIFLGIESVGGGLFVWFGVCDGVIGAEKGTGKG*
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mRNA from alignment at scaffold_2:46902..48943-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_628 ID=mRNA_628|Name=jgi.p|Nanoce1779_2|138043|organism=Nannochloropsis oceanica|type=mRNA|length=2042bp|location=Sequence derived from alignment at scaffold_2:46902..48943- (Nannochloropsis oceanica)
AAATATTTTGCGAAATTGCGCGAACTGAGAGAGAGGGGGTACTCTGGTGC
CTATTACATGGACGGCACGAGGCATTTGACAAAGACCTTTTTGGGTGTTG
CCGGTGGTGGTGGTGGGGGTCGGGGCGGGGCTGCACATGGGCCGGTGGCG
GGCGGGGGGCGGGGGGGGAGGGAGGGGAGGGAGAAGAGGGGGCAGAGGGG
GAGGAGGGGGTAAGCCGAGAGTGAGGGTGTGGGGAGGAAGAGGGGGTGGG
AGGAAAGGGAGAGAAAGCGAGAGTGATGAGGAGGAAGGCATGATGGAGGG
AGGTGCAGAGGAGGAGGAAGAAGATGAGGAGGAGGACTTCGGGGCGGTGT
ATATGGAGGGGGAGGGCGAGGACGAGGACGAGGACGAGGACGAGGACGTG
ATGGACGAAAGCGAGGATGAGGAACACGACTATGATGACCAAGGTAGAGG
GTGTTTGAGAGGGAGTGATCGGAGTGTGCGGAACACGAGCACTAGGAAAC
GGGGGACGAAGCGTCGCCGAGTGGCCGGGGGAGGGGAGGAAGAAGGCAGC
ATCCCGGCCGTTTCGGGTAACGGTCGGCGACGAGGTGGAAGGCGGGCAGA
CTCTCCTACCTCTCCCTCCGCATCTTCCTCTATCTCCTTGCCACGCGGAA
CGGCAGCAACGACAGCAGCAGCGTCGGCAGCGGCAGCAGCAGCAGCAGCA
GCAGCAGCGGCCGCAGTAGGGGGAGCAGGTCCCGCGGACAAAGGGAGAAA
TGGTGGGAAAAAGGGAAGGCGGAAGGGGGCCTTGCTGTCACAGAATACAG
AGATGGAGGCCGCCAAGTCTCTGATGAGCATCATTGCCGCGGCGGAAGAG
GACGAGGATGATGAAGGGGGGGAGGGGGGGAAGGAGGGAGGGGCGGACAG
GAAAGACTGTGGGCCGACCCGACGAGAGGAGGGAGAGAAGGAGGGAGAGG
TGGCATCGGTAGTTTCTGAGGCTGAGGGAGACGGGGGAATGGTGTCGTCC
CCGATGGGGGAGGACATGTTCGTTCCTCCTCCTTTGTTGAATGGAGAGGA
GGTTGAGATTGCTGTGTGTGCCATATCTCAGGTTTCGCCTCCCTTGGTCC
AGCAGCAGCAGCAGCAGCAGCAGCAGCTGCAGTCTTCATTGGATTCGCCT
CCTGCGGTGCAACAGCAGCAACCGCAACAGCAACAGCATGAGAAGGAAGA
AAAGGGAGGGGTAGAGGTAGAGGTGGAGGAAGGGGGGGGAGGGGTAACGG
CAGAAGCGGCGGGGCTGGCGGGGATGGCCTCGCCCGGGGATATGATAGAG
GTGTAATCGAGGGAGAGGGAGGGGGTAAGAGGGGGAGGGGGGAAGGATGG
TAGGAGAAGGAAGATATTTTTAGGTATTGAAAGCGTTGGTGGAGGACTCT
TTGTGTGGTTTGGTGTATGTGATGGAGTGATAGGGGCCGAGAAAGGCACA
GGCAAGGGCTAGATCGAGGGCGATGAGTGAGAGGGGGGAAGCGAATCAGA
AAGAAAGCGAAAAAAGGCAGATGCATCAATGATCGTGGAGGAATGAGAAG
CTGGAGAGTAGACTGGACGGGGGAAAGAGAATGTACAAGGGAAGGAGGGA
GGGAAGTAGGAACGGAGGCAGGGTAAGGGGAAGCGGCCGATGATATTCCT
CATAATTTCCACATTTTTCTTTGTTGCCTGTTTTAAACATCACGCACGCA
ATCATGTCCACTTATCGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG
AAGAAGAAGAAGGGGGAAGGAGGGTTGAGGGAAAGGAGGGAGAGAGATAC
TGCTTCGAGAAAAAAAGTTGTTAGCTCCGAGGAAGGGCACGAGAAGGAGA
GAATAACACAGGACAAACACGAGGAAGAGAAGAAAACGATAATAAAAAAG
AAGGGAAAGACGCACAAGAAGCAGTTCAAACTGAGCAACAAGCAGAACAA
GAAGCAGAACGAAGACACCATCACCGCCATCACAAACAACTTGAGCAACA
AGAAAGAAAGACATACATATACCTTGAAAGATATGCAGATGT
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Coding sequence (CDS) from alignment at scaffold_2:46902..48943-

>mRNA_628 ID=mRNA_628|Name=jgi.p|Nanoce1779_2|138043|organism=Nannochloropsis oceanica|type=CDS|length=1788bp|location=Sequence derived from alignment at scaffold_2:46902..48943- (Nannochloropsis oceanica)
GAGAAGGAAGATATTTTTAGGTATTGAAAGCGTTGGTGGAGGACTCTTTG
TGTGGTTTGGTGTATGTGATGGAGTGATAGGGGCCGAGAAAGGCACAGGC
AAGGGCTAGATGGACGAAAGCGAGGATGAGGAACACGACTATGATGACCA
AGGTAGAGGGTGTTTGAGAGGGAGTGATCGGAGTGTGCGGAACACGAGCA
CTAGGAAACGGGGGACGAAGCGTCGCCGAGTGGCCGGGGGAGGGGAGGAA
GAAGGCAGCATCCCGGCCGTTTCGGGTAACGGTCGGCGACGAGGTGGAAG
GCGGGCAGACTCTCCTACCTCTCCCTCCGCATCTTCCTCTATCTCCTTGC
CACGCGGAACGGCAGCAACGACAGCAGCAGCGTCGGCAGCGGCAGCAGCA
GCAGCAGCAGCAGCAGCGGCCGCAGTAGGGGGAGCAGGTCCCGCGGACAA
AGGGAGAAATGGTGGGAAAAAGGGAAGGCGGAAGGGGGCCTTGCTGTCAC
AGAATACAGAGATGGAGGCCGCCAAGTCTCTGATGAGCATCATTGCCGCG
GCGGAAGAGGACGAGGATGATGAAGGGGGGGAGGGGGGGAAGGAGGGAGG
GGCGGACAGGAAAGACTGTGGGCCGACCCGACGAGAGGAGGGAGAGAAGG
AGGGAGAGGTGGCATCGGTAGTTTCTGAGGCTGAGGGAGACGGGGGAATG
GTGTCGTCCCCGATGGGGGAGGACATGTTCGTTCCTCCTCCTTTGTTGAA
TGGAGAGGAGGTTGAGATTGCTGTGTGTGCCATATCTCAGGTTTCGCCTC
CCTTGGTCCAGCAGCAGCAGCAGCAGCAGCAGCAGCTGCAGTCTTCATTG
GATTCGCCTCCTGCGGTGCAACAGCAGCAACCGCAACAGCAACAGAGAAG
GAAGATATTTTTAGGTATTGAAAGCGTTGGTGGAGGACTCTTTGTGTGGT
TTGGTGTATGTGATGGAGTGATAGGGGCCGAGAAAGGCACAGGCAAGGGC
TAGATGGACGAAAGCGAGGATGAGGAACACGACTATGATGACCAAGGTAG
AGGGTGTTTGAGAGGGAGTGATCGGAGTGTGCGGAACACGAGCACTAGGA
AACGGGGGACGAAGCGTCGCCGAGTGGCCGGGGGAGGGGAGGAAGAAGGC
AGCATCCCGGCCGTTTCGGGTAACGGTCGGCGACGAGGTGGAAGGCGGGC
AGACTCTCCTACCTCTCCCTCCGCATCTTCCTCTATCTCCTTGCCACGCG
GAACGGCAGCAACGACAGCAGCAGCGTCGGCAGCGGCAGCAGCAGCAGCA
GCAGCAGCAGCGGCCGCAGTAGGGGGAGCAGGTCCCGCGGACAAAGGGAG
AAATGGTGGGAAAAAGGGAAGGCGGAAGGGGGCCTTGCTGTCACAGAATA
CAGAGATGGAGGCCGCCAAGTCTCTGATGAGCATCATTGCCGCGGCGGAA
GAGGACGAGGATGATGAAGGGGGGGAGGGGGGGAAGGAGGGAGGGGCGGA
CAGGAAAGACTGTGGGCCGACCCGACGAGAGGAGGGAGAGAAGGAGGGAG
AGGTGGCATCGGTAGTTTCTGAGGCTGAGGGAGACGGGGGAATGGTGTCG
TCCCCGATGGGGGAGGACATGTTCGTTCCTCCTCCTTTGTTGAATGGAGA
GGAGGTTGAGATTGCTGTGTGTGCCATATCTCAGGTTTCGCCTCCCTTGG
TCCAGCAGCAGCAGCAGCAGCAGCAGCAGCTGCAGTCTTCATTGGATTCG
CCTCCTGCGGTGCAACAGCAGCAACCGCAACAGCAACA
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Synonyms
Publications