jgi.p|Nanoce1779_2|508708, mRNA_6279 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|508708
Unique NamemRNA_6279
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length573
Alignment locationscaffold_15:214491..215228 +

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Properties
Property NameValue
TranscriptId508794
TrackFilteredModels2
ProteinId508708
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:214491..215228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|508708gene_6279Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|508708mRNA_6279-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6279CDS_6279Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6279 ID=mRNA_6279|Name=jgi.p|Nanoce1779_2|508708|organism=Nannochloropsis oceanica|type=mRNA|length=573bp
ATGCGGCCCGATGAGGGTTTTTATGTGAGCATGGACTTGCAATCTCAGGA
GGAGAAAGCCAAGCAAGCAGCTCGTGGACAGCGTTGGGGCAATTCGGAGG
CCTACGCAAAGTCTCTGGAAGACGCGGAAGAAGTGACGAAGAAAGCGGAG
CGGGCGGCACGGTTTGGGTTGCCGGTGCAAGAGGCGGTGGGAGGAGTGTT
GCGAAAGATGGGGTTAAACCCAAAATTCTTGTATGTCGCTGACCCTGCTC
GGCATGACCCTGGCCGAAAGGTCCAGCCTAATGCGGTGAAGGCGTTGACA
GACAAAGGAGGAGAAGGCGGCGAGAGGGAGGAGGGAAATGGAGGGATGGC
GACGGTGTGGGAGCCTGTGGAACCTCCGCCTGAGGAGGTGGAAGCGAGTA
AGGTCCACGTGCATGCATTGGACAGGGAGGAGTTTCAGGCCATCAGGAGT
GGCGATGTCCTGCGGTACTTCACCGACTTCTTCCCGCGGTATGTGGAGTG
GCTGGGTGACTGCTCTGCGAACGTTATTTTTGATGACGCTGCAGCAGCAA
AACGGGCGCTCGAGGCCGTCTCT
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protein sequence of jgi.p|Nanoce1779_2|508708

>mRNA_6279-protein ID=mRNA_6279-protein|Name=jgi.p|Nanoce1779_2|508708|organism=Nannochloropsis oceanica|type=polypeptide|length=191bp
MRPDEGFYVSMDLQSQEEKAKQAARGQRWGNSEAYAKSLEDAEEVTKKAE
RAARFGLPVQEAVGGVLRKMGLNPKFLYVADPARHDPGRKVQPNAVKALT
DKGGEGGEREEGNGGMATVWEPVEPPPEEVEASKVHVHALDREEFQAIRS
GDVLRYFTDFFPRYVEWLGDCSANVIFDDAAAAKRALEAVS
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mRNA from alignment at scaffold_15:214491..215228+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6279 ID=mRNA_6279|Name=jgi.p|Nanoce1779_2|508708|organism=Nannochloropsis oceanica|type=mRNA|length=738bp|location=Sequence derived from alignment at scaffold_15:214491..215228+ (Nannochloropsis oceanica)
ATGCGGCCCGATGAGGGTTTTTATGTGAGCATGGACTTGCAATCTCAGGA
GGAGAAAGCCAAGCAAGCAGCTCGTGGACAGCGTTGGGGCAATTCGGAGG
CCTACGCAAAGTCTCTGGAAGACGCGGAAGAAGTGACGAAGAAAGCGGAG
CGGGCGGCACGGTTTGGGTTGCCGGTGCAAGAGGCGGTGGGAGGAGTGTT
GCGAAAGATGGGGTTAAACCCAAAATTCTTGTATGTCGCTGACCCTGCTC
GGCATGACCCTGGCCGAAAGGTCCAGCCTAATGCGGTGAAGGCGTTGACA
GACAAAGGAGGAGAAGGCGGCGAGAGGGAGGAGGGAAATGGAGGGATGGC
GACGGTGTGGGAGCCTGTGGAACCTCCGCCTGAGGAGGTGGAAGCGAGTA
AGGTCCACGTGCATGCATTGGACAGGGAGGAGTTTCAGGCCATCAGGAGT
GGCGATGTCCTGCGGTACTTCACCGACTTCTTCCCGCGGTGTGAGTTGAG
GGAGGGAGGGAGAGAGGGAGGGAGGGAGGGTTGGTGGGCGAGAGTGGGCG
GGGTGCAACAGGCAGACAGAGCAGACGTTGTGACGAGAAGCGCAAAGGGA
GTGATGTAACTGTTTCCTCTCCTTCCCTCCCTCCCTCTCTTTTCCACAAA
ACTAGATGTGGAGTGGCTGGGTGACTGCTCTGCGAACGTTATTTTTGATG
ACGCTGCAGCAGCAAAACGGGCGCTCGAGGCCGTCTCT
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Coding sequence (CDS) from alignment at scaffold_15:214491..215228+

>mRNA_6279 ID=mRNA_6279|Name=jgi.p|Nanoce1779_2|508708|organism=Nannochloropsis oceanica|type=CDS|length=1146bp|location=Sequence derived from alignment at scaffold_15:214491..215228+ (Nannochloropsis oceanica)
ATGCGGCCCGATGAGGGTTTTTATGTGAGCATGGACTTGCAATCTCAGGA
GGAGAAAGCCAAGCAAGCAGCTCGTGGACAGCGTTGGGGCAATTCGGAGG
CCTACGCAAAGTCTCTGGAAGACGCGGAAGAAGTGACGAAGAAAGCGGAG
CGGGCGGCACGGTTTGGGTTGCCGGTGCAAGAGGCGGTGGGAGGAGTGTT
GCGAAAGATGGGGTTAAACCCAAAATTCTTGTATGTCGCTGACCCTGCTC
GGCATGACCCTGGCCGAAAGGTCCAGCCTAATGCGGTGAAGGCGTTGACA
GACAAAGGAGGAGAAGGCGGCGAGAGGGAGGAGGGAAATGGAGGGATGGC
GACGGTGTGGGAGCCTGTGGAACCTCCGCCTGAGGAGGTGGAAGCGAGTA
AGGTCCACGTGCATGCATTGGACAGGGAGGAGTTTCAGGCCATCAGGAGT
GGCGATGTCCTGCGGTACTTCACCGACTTCTTCCCGCGGTATGTGGAGTG
GCTGGGTGACTGCTCTGCGAACGTTATTTTTGATGACGCTGCAGCAGCAA
AACGGGCGCTCGAGGCCGTCTCTATGCGGCCCGATGAGGGTTTTTATGTG
AGCATGGACTTGCAATCTCAGGAGGAGAAAGCCAAGCAAGCAGCTCGTGG
ACAGCGTTGGGGCAATTCGGAGGCCTACGCAAAGTCTCTGGAAGACGCGG
AAGAAGTGACGAAGAAAGCGGAGCGGGCGGCACGGTTTGGGTTGCCGGTG
CAAGAGGCGGTGGGAGGAGTGTTGCGAAAGATGGGGTTAAACCCAAAATT
CTTGTATGTCGCTGACCCTGCTCGGCATGACCCTGGCCGAAAGGTCCAGC
CTAATGCGGTGAAGGCGTTGACAGACAAAGGAGGAGAAGGCGGCGAGAGG
GAGGAGGGAAATGGAGGGATGGCGACGGTGTGGGAGCCTGTGGAACCTCC
GCCTGAGGAGGTGGAAGCGAGTAAGGTCCACGTGCATGCATTGGACAGGG
AGGAGTTTCAGGCCATCAGGAGTGGCGATGTCCTGCGGTACTTCACCGAC
TTCTTCCCGCGGTATGTGGAGTGGCTGGGTGACTGCTCTGCGAACGTTAT
TTTTGATGACGCTGCAGCAGCAAAACGGGCGCTCGAGGCCGTCTCT
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Synonyms
Publications